Array 1 162129-160520 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIZY01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1766 NODE_1_length_612812_cov_43.770699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162128 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 162067 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 162006 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 161945 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 161872 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 161811 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 161750 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 161689 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161628 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161567 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161506 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161445 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161384 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161323 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 161262 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161201 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161140 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161079 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160976 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160915 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160854 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160793 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160732 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160671 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160610 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160549 29 96.6 0 A............................ | A [160522] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179513-178387 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIZY01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1766 NODE_1_length_612812_cov_43.770699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179512 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179451 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179390 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179329 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179268 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179207 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179146 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179085 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179024 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 178963 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178902 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 178841 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178780 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178719 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178658 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178597 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178536 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178475 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178414 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //