Array 1 48192-45582 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXU01000028.1 Neisseria meningitidis 98008 NM98008.contig.27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48191 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 48125 36 100.0 30 .................................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 48059 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 47993 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 47927 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 47861 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 47795 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 47729 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 47663 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 47597 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 47531 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 47465 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 47399 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 47333 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 47267 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 47201 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 47135 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 47069 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 47003 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 46937 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 46871 36 100.0 30 .................................... GTAAGTGCTTTATTCATTATGGTTTCCTAG 46805 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 46739 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 46673 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 46607 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 46541 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 46475 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 46409 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 46343 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 46277 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 46211 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 46145 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 46079 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 46013 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 45947 36 100.0 30 .................................... TCGGATATTAAACAACTGAAATAAAAGGAA 45881 36 100.0 30 .................................... GATTGAGATTTTCAACGAGCAATGCTTTGA 45815 36 100.0 30 .................................... TGCCAGCCCGGGCGATTTCGAGGCGGTCAA 45749 36 100.0 30 .................................... CGGGCGTGATGTCGTGGAATAAGATGCCTT 45683 36 100.0 30 .................................... CTTCGGCGAATCCGCCCCTGCCGATTTACT 45617 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //