Array 1 480776-480927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJBY010000001.1 Streptomyces acidiscabies strain NRRL B-16521 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 480776 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 480837 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 480898 29 93.1 0 ..........................AT. | A [480922] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGTGTTGGCCAGTGGGGTAGATCGAGCCGTGCGCTGCTGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : CCGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGACGCGGTCGTTGCGGGAGAAGGGGTGGATCACGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2130567-2130294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJBY010000001.1 Streptomyces acidiscabies strain NRRL B-16521 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2130566 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 2130505 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 2130444 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 2130383 29 100.0 32 ............................. ATCCCCTCTCGGCCCGCGAGAGGGGTCACGCT 2130322 29 79.3 0 ............T........G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : AAGGTGGAACGGCATCGTCTCGTACGTAGTCATGCCCCCACTTTGCCCCACGGATCATCACGAACTGCAGCTGGAGTACTGGCCTCGATTCTTCGGTGGGTTTGGTCGTTGAGTGGCCCGGCGGTTCGCCCGTAATTTCCCTCGCCGTGTGAGGGTGGGCCGTCGCGTGTCACTGCGGAGTGCGCCGGGTTCCACGGGCCCGGAGGAGCGTCTCTGCTGCCGGGGATGTTCGCGCCGGGCTACCAGAGATCGCGTCGAGGACACTCCACCTTCGGCAATCACCCTACGGAGCGGACGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGACT # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5294454-5296571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJBY010000001.1 Streptomyces acidiscabies strain NRRL B-16521 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 5294454 36 100.0 37 .................................... GGTCTGCCGGTGCGCGCCCTGCACCCCCGGGCCACGA T [5294467] 5294528 36 100.0 36 .................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG T [5294541] 5294601 36 100.0 36 .................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC T [5294614] 5294674 36 100.0 36 .................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG T [5294687] 5294747 36 100.0 37 .................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG T [5294760] 5294821 36 100.0 35 .................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG T [5294834] 5294893 36 100.0 35 .................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG T [5294906] 5294965 36 100.0 36 .................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC T [5294978] 5295038 36 100.0 35 .................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA T [5295051] 5295110 36 100.0 37 .................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA T [5295123] 5295184 36 100.0 36 .................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT T [5295197] 5295257 36 100.0 36 .................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG T [5295270] 5295330 36 100.0 38 .................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC T [5295343] 5295405 36 100.0 35 .................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG T [5295418] 5295477 36 100.0 37 .................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG T [5295490] 5295551 36 100.0 38 .................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT T [5295564] 5295626 36 100.0 37 .................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC T [5295639] 5295700 36 100.0 36 .................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC T [5295713] 5295773 36 100.0 38 .................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA T [5295786] 5295848 36 97.2 36 ........T........................... AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG T,C [5295861,5295871] 5295922 36 97.2 36 ..............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG T [5295935] 5295995 36 100.0 35 .................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT T [5296008] 5296067 36 91.7 37 ...T...........A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT T [5296080] 5296141 36 94.4 35 ........T....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT T [5296155] 5296213 36 91.7 36 ........T........A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 5296285 36 94.4 66 ......C............C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CCC [5296298] 5296390 36 86.1 35 .....A......TT.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT T [5296400] 5296462 36 86.1 36 ........T...T..A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG T [5296472] 5296535 36 86.1 0 ..C........TT......C.C.............. | T [5296545] ========== ====== ====== ====== ==================================== ================================================================== ================== 29 36 97.4 37 GTGGCGGTCGCCCCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : CAATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-64] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //