Array 1 698282-699146 **** Predicted by CRISPRDetect 2.4 *** >NC_014212.1 Meiothermus silvanus DSM 9946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 698282 35 100.0 42 ................................... CCGCTTCGGCCAGGGCCAGGGCCGCCCCCGCGCCCATCACCA 698359 35 100.0 42 ................................... CAACCTGGATCGAGGAGCAGATCCAGCAACGAAATCCTGAAG 698436 35 100.0 42 ................................... CGGCGGCCTCGAACTCGCCGTCGATGAAGAGCTCCGCAGTAA 698513 35 100.0 37 ................................... AAGTTCCTCCTTACGCATCAGCTGCAAAAAAAGCTGA 698585 35 100.0 41 ................................... GTCGTTGTAACCATCGATGAATGTGACACTTACAGTGTAGG 698661 35 100.0 39 ................................... TTTACGGACTCAGAAGTGAAGTCAAGGAAGTATATACCT 698735 35 100.0 41 ................................... AAGGACTTGCTGAAGCGCCTTATGCCTAGTTACTAAGGTGT 698811 35 100.0 38 ................................... TTTCGTCATACTGTCATCTCCTTACCCTCGATTGTCGG 698884 35 100.0 41 ................................... GCTCGGCGCAGGCGAGAATTATCTTTTCGTCGAAGTTTAGC 698960 35 100.0 42 ................................... CCGTACGCACAGTACTCGGCTATGCCGACGCCGAGCTCACAG 699037 35 97.1 40 .........C......................... GCAAAGAAGGACGGAAGGGTTAGTCGAGGGCTACGAACCG 699112 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 99.8 41 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : GCTCAACCCGGCCCAGCTCGAGCAGCTCAAGAAGCTGTTGCAGAAGAAGCTCAAGCCCACCGAGGACGGCGTGCGCATCTACCCCGTAGGGGGAACGGTGGAGGTACTGGGCGTAGGTCGGATTGCCGATAACCCCGACTACCTGATCCTCTAGCCGCAAAAATCTCTGCGCGATGGCACTCCTTCGCCAGTAAAAGCGGGCACTATCCCCGTCTGAAACGGCACATAACCTGATTCTTAAAACACAGCGTTATGTTTTGCGCAAAATGTTATAATCACCCTAACGGGGCTGCCCGGAGCGTACCTTGAAAGCTAGCCTTTCCCTTCCTCATCGCCAATTCCTGCGACATAAAGTCTAAATGTGCAGGGAAGTAAGCATTCATCGGCATAATCCCCACTTTTTACCCCACTTATCCACAGGGGGGCTGTGGATAACTCCACTTTCTCATAAATCCACCCCCTGGCGCCTCTGTACGGGACGGGGTTTTGTGGGGTATGCT # Right flank : CCTTCTTGTTAGCATGTCGGTATGCAGGAGATAAAACAGGTGCTCATCGCTACAGTAGGCCATAGCCGCGCTCCTGTGGAGTTTGCCCTAGCCGAGCATGCCCCGGAGGGAGTGGTTTTCATCGCCAGCCAAGATTCGCAGTTGGTGGCAGCGGAGTTGATGCGAGAGTATGGCGCCCACCTGCGCCACCATACTTTTTTGCTGGACGACCCCGAAAGCCTTACCGAGAGCTACCTTGTGGCCCAGAAGGCTTTACGCAAGGCGCTGGAATGGGAAGCCCGCAGCGTAGTGGCCGATGTAACCGGGGGAACCAAGCCCATGGTGGCGGGGGTGGTACTGGCGCTTTCGGGACGGGGAGTTACGTTTAGCTATGTAGGCGGCGAGCAGCGCGACGAGGTGGGGAGGGTTGTCGGAGGGGCTGAACGGCTGAAGCTGCTGGAAGACCCTACCACGCGCTACGGGGTAAGGGAGTGGGCCGAGTTCGTCCAGGCCTGGAACAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1221053-1221692 **** Predicted by CRISPRDetect 2.4 *** >NC_014212.1 Meiothermus silvanus DSM 9946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1221053 29 100.0 32 ............................. ATCAAACGCTCCTCGGCGAGGCTCAGGCGCAG 1221114 29 100.0 32 ............................. GAGATGGAATGACCAAGGAAAATATACCACAA 1221175 29 100.0 31 ............................. TCTCTCCAGATCTTCGGCGCTTCCCACGCCA 1221235 29 100.0 32 ............................. TACCACACCCCCCTCAGCCTGAACCGGTAGAC 1221296 29 100.0 33 ............................. CAAGCACGGAAGGCGAAGAATATATCTCGCCGC 1221358 29 100.0 32 ............................. CTGGTGGCGCGACTGGGGGGGTGACAAAACTA 1221419 29 100.0 32 ............................. CGGCTAGGGGGGGTAACGGTGTTCTCCCAGGC 1221480 29 100.0 32 ............................. AGCGTGGCAAAATTGACGTGCGGCGCTCTAAA 1221541 29 100.0 33 ............................. GAGGTCGCATATGGGAATCTTTAGAGGAATCAA 1221603 29 100.0 32 ............................. AAATTCATTAGCAGTAGAACTTAATCCTGAAC 1221664 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTATTCCCCGCACACGCGGGGATGAACCG # Left flank : GCCTCTTCGATGCCCTAGACGTTCCTGATCCCTACGCTGCCGATGCCGCGTCTCCGGGCGAACTGTGGGACCCCAGCGGCCCGGTTCCTGGTGGAATAGCCTATGGTAGTGATCATCCTGGAGAAGGTGCCCAAGACCCTGAGGGGTGAACTTTCGCGCTGGATGCTCGAGGTTGGCACCGGGGTATTCGTGGGCAGTGTTTCGGCTTTGGTACGCGATTTACTATGGGAGAAGTGTGTAGCGAAGAAAACCGCTGGTCGCTGCTGCTTGCTCTACCGTACCAACAACGAGCAAGGTTTCGCTGTTCGAACCCATGGTGACACTACTCGTACTCTAGTAGACTTTGATGGGCTGACCCTGGTAGCTGTGAAGAACGCCGAGTGGGAGCGTATGCACCGGAAGACCAAGAGAAAACGACCAGGGGAGAATCTTGACAATCAAACTCGGGATTGTGACACTTCCGGGGGGTCTAGCGGCTAGTTTTGCTGTTAGAATCAAGA # Right flank : GCGCCGCCCCTGTCGCCCTGGAAAAAGTTGTCAAATAGTTATCAAAACGGAGTAACCAGATTCATTACAGACCGTGGTTACTCCGTTTTCTTTCGCACTACGCTATTTTCTAGTGGTGCCAAGGGGCGGAATCGAACCGCCGACACTGCGATTTTCAGTCGCATGCTCTACCGACTGAGCTACCTTGGCTCGCGGCGCGCCGGGCGCGGCACGAGCTTCGACCACGCGCGGCACGCGTTTTGGCGGCCCGGACGGGACTTGAACCCGCGATCTCCCACGTGACAGGCGGGTATGTTAACCAACTACACCACCGGGCCAGTTTTCGGCTGCCTTGGATTGTCCAAAGGGCAGCACATAGGATGATAGTCGAGGGGGGGAAGGCTGTCAAGGCGTGTAATCGGTCAACACATTTGAGACTCTTTGAGGAACCGACTCCTCTTGCATCTTAGCCAAAAACTCCAGCGGAGCAAGACCCTGTAATCGGTCAACACATTTGAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2315230-2316091 **** Predicted by CRISPRDetect 2.4 *** >NC_014212.1 Meiothermus silvanus DSM 9946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2315230 35 100.0 40 ................................... GGTCGTGTACGAAGAATAGCGTCGGGCCCCCCAGGAAAAA 2315305 35 100.0 36 ................................... CCGCCGGGCCCACTCCAAGGTGATCCGGGGGTATCC 2315376 35 100.0 42 ................................... TTTCGAGCCAGGCAATACTTATTCATATAAAGATGCTCTATA 2315453 35 100.0 38 ................................... ACCACCCAGGGCGAGGAGTCTTCCGCCAGTCGCTCCAG 2315526 35 100.0 38 ................................... AGTTATTATTCTGTTTCTGGTGGGGTAAGTAGCTTATC 2315599 35 100.0 43 ................................... TAATGAACTCAATATTGAAACTATTTATCTAAATATTTCTCAA 2315677 35 100.0 41 ................................... TGCAGCTATTGGCACATTTTCAATCTGTGCCTGAATAAAAG 2315753 35 100.0 40 ................................... TCTTTTATATCTAGTTTTTTTAATTGTTCAGGAATTACAT 2315828 35 100.0 41 ................................... AAATAAACTTAGTACAAAGACAATTTTATTGTCTTATTTTT 2315904 35 100.0 42 ................................... TCCTATAGCAAGTTTCATTTCTAGCAGGACGCGATCTCTATA 2315981 35 100.0 41 ................................... AATACTTCGTATCTACTGGTAACGTAATCAAAGAAAGACTT 2316057 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 12 35 100.0 40 GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : ATGGCCCGCTGGTTGCTACACATGTAAATCACCCCACCCCCGCCCCAGCGTAGTGCGAGGCCCAGGTTGCCCGGCTCCACCACACCATCCCCTACGACCTCCCCGCGGGGTCAAGGTAGCCCACCCTCTCGGGGAGCGGGTATTCGGCGCGAGCGGCAAAAAATCCCTGCGCGATGGCACTCCTCGCCCCGGAAAAGCGGGTGTTATCCCCGTCTGCAACGGCACATAAGCGGATTTTCCAAACACCGCGTTATGTTTTGCGCAAAATGCTATAATCAGCCTAACAGGGCTACCCGGAGCGTACCTTGAAAGCTAGCCTTTCCCTTCCTCATCGCCAATTCCTGCGACATAAAGTCTAAATGTGCAGGAAAGTAAGCATTCATCGGTATAAACCCCACTTTTCACCCCACTTATCCACAGGGGGGTTGTGGATAACTCCACTTTCTCATAAATCCACCCCTTGGCACCTCTGTACAGGACGGGGTTTTGTGGGGTATGCT # Right flank : CCCTCCCTGATATGCACTGTTACTAAAGTATATTACGTGGTTTGCTACTTGAAATGGGGGAAGAAAAGGGAGATGGTTTTCATTGCTATGAGAAACCATCCCCGCTATCAGCATAGCCTGGAGGAACTGTTTTTGAGGGTCTTCATCCTGGTCGATGACTGGCTCAAAGCCAACCAGGAGCGCTTCAGGCTACCGGTGCAAGCCAACCAGGTGGCCAGCTACAGCGAGTTATTCACCATAGCCCTGGTAGGTGAACTGTTGGCCCAACCCTACGAGTCGGTGTGGTACTGGCTGGTGCGTCAGAATCATCGGGGCTTGTTCCCGCGACTACCCGAGTACAGCCGTTACCATCGGATCGTGCGCAATGCGGAGCCCCTATGGGCCGAGCTCGCTCAATCGCTAGCCGCCAAGGAGGATGAGGATTGGGGGATTGAGGTCATCGACACCAAGCCCCTCCCCATCGCCAAGGGTAAGCGTTGGGAATGGGCCAAGATGCCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 2317014-2317193 **** Predicted by CRISPRDetect 2.4 *** >NC_014212.1 Meiothermus silvanus DSM 9946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2317014 36 100.0 34 .................................... GATCCCGGCGAGATTGACCCCTCAACAGTAGTAA 2317084 36 100.0 38 .................................... CAAATCCGGGTACGCTCACTACCCTCCCCCCCTCGTCC 2317158 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 36 GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAACA # Left flank : TGGGGGATTGAGGTCATCGACACCAAGCCCCTCCCCATCGCCAAGGGTAAGCGTTGGGAATGGGCCAAGATGCCCGAGGCCAGCAAGGGCTTCAGCACCATGGGGATGGTCTGGGGCTTTAAGCTGCACGCGGTGGTGAGCCTGGGGGGGCTGTTCCGACGTTGGGCCTTTGTGCCTGCGCACGTGCACGAGAGCCGTGTGGTCGAGGGACTGCTTGGGAGGGCCACGCTAGGGGACAGGGCTTACGTAGGCACGGGGGTGTACTGTCCCAGCCGCAAGAACATGAAGCGCCAGACCTTCTGGCCCAGGGCTTTATCCAGGCTGCGTAAACGCATCGAGACCAGTTTCAGTTCCCTGGTCCGCTCGCTTCACCTGCACGTGGGGCAGGTCAAGACCTTCTGGTCTTTACGAGCCAGGGTCAACCTCAAAATCGCTGCCCACAACCTCATGCACTCAGGTGTGTTGGTCTGACTTCAGGTAGCAAACGAGGTTATTCTTTT # Right flank : TGGGCCACCACTGTTGCTGAGAACAGAATCGTCTCGTTTGCTGCCTGAACTCCGCCCCACACCCCCGATGTGGAGGAGGTTGCGGGCAGCGACTTGGAGGTTGACCCTAGCCTTATCTCCCAGGGATGGATCAGCTCAAGGGCGGCGGCGCTTTGGTGTGCATGGGCGGGAACCAACATCCAGCGCTTGAATCACCCAGGCTCACGACCGCATGCAGTTTGCAGCCCCAGGCCATCCCCGGGGTGCTGAAGCCCTGGCTGGCCTCGGGCATCTTGGCCCCTTCCCAACGCTTACCCCTGGTGATGGGGAGGGGCTTGGCGGCGATGAATTCAACCCCCCGATCCTACCGCTCGGGCGAGCTCGGCAAACACCGTGAAGATCCTGGCCAGGTCGGGGGCAGATGGGCCCGGACGGGGCCTTGAAGAGCGGGGAGTCGTCACGTTGGGGGCATTTCCGGAATGTTCAAACCGGGCTAGGAGGGTTGACGGGAGTCGGACAGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 125763-125440 **** Predicted by CRISPRDetect 2.4 *** >NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 125762 37 100.0 34 ..................................... GCATAACTCGAGCGGCTTGTCAATACTTACTGCC 125691 37 100.0 36 ..................................... GGACTGACTACACAGGAATACCTAAATACAATTCTG 125618 37 100.0 34 ..................................... CTTGAAATATTCCAATGGTGTGATTAGGCCAAAG 125547 37 100.0 34 ..................................... AGACATTGAGGCTTGTCTAGGAGCGCCTTAGAAA 125476 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 35 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : CCGTGCAGGTACAGCTCGGGCAACAGCTCCGAGACCTCCCTCGTGCGCCGGGCGAACAGGGGGAGAATCCGGCTCTCGAACCGCTCCTCCACCCCCCGGACCCGGGGCCGCCGCACCTCGATGGTGCCCATGGAGGTCGTCAGCTTCCGCGGCTTGCCGTAGCCGTTGCGGTAACCGCACGCATCGACGGCCGCCCGCCTCTCATACCGGGCACGGCCCAGAAATTCCGTCACTTCCTCCTCCAGCAGCCCCTGCATCAACTCCCGGATCTTCCCCCTCAGCCAATCCCGCAACGTCTCCCAGGTGGGAGATGACGAACGGGCCTCAAGGTGTTCGCCTATCGGCGAAGCAGCCACTTTGGTACGCTTCCCCATGGCGGTGTGCCTCCTCCCTCGGGCTTCAAGCCCTCACTTTTTTGCCAGGAGGAAGGATACACCGCCCTCAGCGTATTTCCACACCCCTTGATGGTATCTCCGTAGCTGTTAGAAATATCCACATAG # Right flank : CAAGGCAGCTACCCCATCAGCCAGATTACGGGCAAAGCCGGTATGGCCTACGGCCATCCCCACCCCTCGCCCCGCTCGGCGAAAATACGCCACGGGGGTCTGGAGGAGCCTTCATTGCGCACCGTGAAACTTGGAGTAGGGGGTTCTATAGGGTTGTCCGAAATGTTTAAACTGCAAACCCTGGTCGAAGGGATGCGTATAGCAACGAAATCAAGACTTATGGGTAGTAAACCACCCCACGGCTAAAGCCGGGGGCTTTCCGAGGGAGGACGGTGCAGAGGAGACCCCCACGAATCCGGGCCGGTTTACACCGGTCAGGCGCAAAGCGCCCAAAACCTTCACGGCCAATGCCCATCGAGCCGGCTCTTTGGGCAACGATCCCCTGCGGGAGGGCCTGCGGCCCTGCACGCAAGGCAACGTTATGCGCGGCCACCCAATCCGCGTTGTGCTGGAAACCGCAGCACTGGCAACGGAAGAGGGCCTGGCTTTTACGGTTCTCC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 2 127519-127195 **** Predicted by CRISPRDetect 2.4 *** >NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 127518 37 100.0 35 ..................................... TGAACCCACACCGCAGCCTGTTTGCAAACCGCTGA 127446 37 100.0 35 ..................................... TATTTTTAAACATTAAAGAAAGTATTTAAACTAGT 127374 37 100.0 35 ..................................... CTTTGCGTTTACCCTACTGGCCTGTATAAAACAAT 127302 37 100.0 34 ..................................... GGGCCGATGTTGGTCACGATCCCCGCGTACTCGA 127231 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 100.0 35 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : GCAAACCAGGGAGGCATCGGTGGTAAGTACGTCTCCCGGGGTCTTGCTGGCGTCCGGCAGGATAGGAGGCGTATTTTCGCCGAGCAGAGCGAGGGGTGGCGCAAGTTGGGCCATACCGATGCCTAGAAAAACCCCGATAGCCCAGAGCCAGGCTCTTCTCGGTACGTGTTTGCCCACCCCGCTGCGCGGCGAAAGAAACGTCTGCAGGCAAGGCAACATGTGTAGGAGGGTAGCCTAACCTGCTGAAGCAGGGATGAAAGGTTTTCGTTAACCGATAGTCCAAGCAAGAAGAACTCCTAAGCAGGGTATAAGCTGGTTATGCGCGAACCCCAAGCAAGTGCCAAAACCCGGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCTTCAACATCCCCCACCCTGCGTCGGAGGCTTTTTTGGGGGGTTCGCGCAAACGGCCCCTTGAACCCTGTCCAGCACGCACGCTAGAATGGGGCC # Right flank : GATCACGTAGCTGGAGGTTCCGTCAATAGGTGTGTAAACCTGCTCAGGCAGCGACCTCCTCCTGGGTGACCTCGATGCCGTCCTCGTAGCGCACCCCGGCGTGGACCTTGGCCAGCAACTCCGGGGCATTCAACCGCCGGAACCTCTTTTGGGCCACCATCAGCATCTTCCAGATCACTGCCGTGGCCCGTTCCACCTTCTTGAACCGCTTGGCCGCATCCGTCCGCAGCCGCAGTGCGGCGAAGGGCGATTCGATCACGTTCGTGGTCCGCAGGTGGCGCCAGTGCTCCTTGGGGTACCGGTAGAAGGTCACCATCCGCTCCCAGTCCCGCCCCAGCGTCTGCGCCGCCTTGCCGTAGCCGTGCCGGTGACACCAGGCCTCGAACTCCTTGCCCTTCCGTTCCGCCTCCGCCCGGGTCGGCGCGTAGGCGATGGCCCCCAGCATGGGCTTGGCCACGGCCTGCTGGTGGCGCGGCAACTGCTCCAGCACATTGAGCACC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : NA // Array 3 319856-318303 **** Predicted by CRISPRDetect 2.4 *** >NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 319855 36 100.0 39 .................................... CTTGTTGGGAGTGCCGGTGATGACTGGGGCTCGATTGGA 319780 36 100.0 37 .................................... CTTGTTGAAGTTTCTCCCCCCGTTCGATGGGACTTGC 319707 36 100.0 37 .................................... AAAATGCCCCTAGCGAGAGGGGGAGACCGGGCGAGGT 319634 36 100.0 36 .................................... ACCGCCAGCATTGGGCGTGCCGCCTGGTACAGCTCA 319562 36 100.0 34 .................................... TAGCTGGGAGCAATACAGTCGAACGAGTACAGGT 319492 36 100.0 36 .................................... AGATGCATCCCCGCCAGCCCTTGCGGGCCCTCAACG 319420 36 100.0 36 .................................... GGGATACCTAGGCCGCATGCTCACCCTCTGCCTGCC 319348 36 100.0 34 .................................... CGTAACCCTCGAGGGCCTTCACGAAATCCTGAAG 319278 36 100.0 36 .................................... CGGTGCTTCCAGCAGACCACCCATGGTGGGAGGCAA 319206 36 100.0 36 .................................... CAAGCGTGCCAGAGACGCCCAGGGATGGTTTTATAA 319134 36 100.0 37 .................................... CGCCATATCGCCCCCTCCCTGGCGGCGGAGCCGCCCC 319061 36 100.0 35 .................................... GCCTACCTATGGGAAGCGGGCGGCACGGTGGTGGT 318990 36 100.0 37 .................................... GCTGAGCGGGGAGAGCGCATCCGGGTGACCGCTCACG 318917 36 100.0 32 .................................... CGGTGGGTGGCCGCCGAGCCGTCGGGGCTCCC 318849 36 100.0 37 .................................... GCTGAGCGGGGAGAGCGCATCCGGGTGACCGCTCACG 318776 36 100.0 36 .................................... ACGACCTTGGAGGAGCTGCTCGCCCGGTTCAAGCGC 318704 36 100.0 39 .................................... CTCGACACCGCCCTCGCTCTCAAGGCAGCGGGGATCTCC 318629 36 100.0 36 .................................... AATCTTGAAAGGCTGCGTCCGTCTGGTTTCCTCAGG 318557 36 100.0 36 .................................... TCGCCCTGGGGCGCGGGCTTGCCCGTCTCGTAGGGC 318485 36 100.0 35 .................................... AAAATAGCTCACACGGAAACCTCAGGAAGTGCCGG 318414 36 100.0 36 .................................... TGGCCAACTAGCGGAGTCGGAAATTTGATGAGCCGG 318342 35 86.1 0 ......................-.........GGCT | C,TG,CT [318305,318308,318312] ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 99.4 36 GGTATAAGCTGTAAATACTCCGTAGGAGATTGAAAC # Left flank : ACGACACCCCGTCCGACTCCAGGCGGGCCAAGCTCGCCCGCCTGCTCAAAGGCTTCGGCGAACGTCGGCAGTTCAGCGTCTTCGAGTGCCGGCTCCGCCGCGAGCACTGGGCGCTGCTCAAGGCCAGGATCGAGAACTTGGTGGACAAGGACGAGGACGTGCTGGCCGTCTACTTCCTCCCCCCTGAGGCCGTGGGGCGCACCTACCGCATCGGGCACGAGGCCGTCAAGCGCTTGGACGAGCCCGAGTTCATCTAGAGCCCTCGAGCGCGAACGCCACTTCACCCGCCCCCAGTTCCTCAGGGCGGGGTTTTTCCCGTCCCCAGCGAGTCAAATTCCATCTCAAGTACATTCTTGCTGGAGCATCGTGTGCGTCACCGTGCCTGACAGCAAAAACGGCCTCTCGAGGTTCCGCGAGGCGCTGGCTCGAGGGAGTGCTCGAGGGCGCGTGCGAATTCAAGCTCAGGAAAGCCGGCCTGCATTTGCCTTTTTCGGGGTACC # Right flank : AGGTATGGAGACAGATTTCATACGGCTTTACGATAAAAGTCTGTCAATTCTTAGGTATGCGCCCTTGTTGACCAATAGTGGTCATATCCTCTATTATTGCGTAGTAGGAGATGGGTTCTCCATGCCCAAGGCTGCTGATTGGAAAAAAAAGGTGGTCAATATCGCCGAGGCCAAGGCCCAGCTCTCCCGCTTGATCGAGCGGGTCGAGCGGGGGGAGGTCGTCCTTATCGGGCGGTATGGCCGGGTGGTGGCCAAGCTGGTGCCACCCGAGGCCGCTCCCAAGCCCAAGCGGGTGCCAGGAGTCTGGAAGGGGAAGGTCTGGATAGCCCCCGACTTCGACGAACCCAACGCCGAGATATCCCGGATGATTGAGGAAAGCCCTCTTGAACCTGCTGCTCGATAGCCACATCGTTTTGTGGTGGCTTTCCGATGATGAAAGACTGACTCGCAAGGCCCGCCGGTTAATTGAGCGGGCCGACGACGTCTTTGTGAGTGCCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATAAGCTGTAAATACTCCGTAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 4 333510-333827 **** Predicted by CRISPRDetect 2.4 *** >NC_014213.1 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 333510 36 100.0 33 .................................... GTTGCGGTGAACATCGTGCCCGACTGGTGGAGG 333579 36 100.0 34 .................................... AGCAAACGCTCGGTGGCCTGGGTGGCCTCCGGCC 333649 36 100.0 35 .................................... ATTGCAGGAGATGGTGGGGCGATAGGGTGGAGCCT 333720 36 100.0 36 .................................... CCCCCATACTGGTGGATGGCCGCGTAGCGCACGTTG 333792 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 100.0 35 GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC # Left flank : CGGCTAAGCTTTCTGAGGGGTTCTTGTCCTTGCTTCTGGCCAGGGCCCCTTTTCCCATCCGGGCCATCCAGGTGGATGGGGGCAGCGAGTTCATGGCCGAGTTTGAGGAGGCCTGCTGTGCTCTGGGGATTGCCTTGTTTGTGCTACCGCCGAGGAGTCCTAAACTCAATGGTCACGTGGAGCGGATGCAGCGGACCTTCAAGGAGGAGTTCTACACCCGGCCTTTGCCCACCCCGCTCAGCGAGCTGCAGGCAGAGCTGGATACCTACCTGGACTACTACAACCGCCGAAGGCCTCACATGGCCCTGGGGGGTCTTGCTCCGCTGGAGTTTTTGGCTAAGATGCAAGAGGAGTCGGTTCCTCAAAGAGTCTCAAATGTGTTGACCGATTACATATGCTACCTCGAAGGCTTCAGCTAGTGTACACTGGTAGCAGTACGCACGCCGCGTGCGATTTTGGATCTTGAAAAGCAGTAGAGAACGAGATAGAAGACCGGCGCC # Right flank : CGACTCCTGATCAGAGGACTAGGGAGCAATGTCCGCGTTGCAAAAGCGACTAAGGGGATTGAAACCAACAGCCTCAAGCCGCTCTTATTTTCTTACCTCGAGCCTATACGCGCTTTCGCCACGATATCCTAAGCTGCGGCTATAGTAAAATACTGGAGACGATACATGGATGACCGGAAACTAAATCCCTTGCGGCTGGCCTTTCTGGTCTCCATAGCCCTCTACTTCGCCTTCGTCGGTCTACGCCTACCGACCAAAAACCCATCTGAGACTATCCCCCAGGCGACCCAAGCCCCTTTGGTCCAACCACAGGTTCGCATCGACGGCTGTCACGCCCACATCAGCGAAGCTACCGCCAGCACCCGAGAGTTGCGCCTGAAGGTGAGCGGAACCGCCGAAACCCTCCGGGTCAGCTACGACGGCGGCATGATCGTGAAGGCCACCGAAGAAGTATGCAGTGGGGGAGAATGCCGCGTCTTTACCCCTGCTGCCCCCAAAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //