Array 1 68169-69517 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSBH01000002.1 Veillonella parvula strain AF04-47 AF04-47.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 68169 23 100.0 55 ....................... GATTTTGAAAGGTTAGGCGGACTATTAAAGATAATCACCTGCCGTTAAATTAAAT 68247 23 100.0 52 ....................... TCCGCTTCTTTAATGGCTTGTATCAATTCTCGATTGATAAGTTAAATTAAAT 68322 23 100.0 56 ....................... TTTTCATCCACGTTACAAGTATAGAGTTTATCCACTAAAGGTAGGTTAAATTAAAT 68401 23 100.0 56 ....................... AATTCCTCCATTATTAAAAATAACCAATTATGAGAATTACGAACGTTAAATTAAAT 68480 23 100.0 53 ....................... TCGTGGATAATGGAGCCTCTTCGTAGCGGCAGGCTTTTCCTGTTAAATTAAAT 68556 23 100.0 55 ....................... GATTTGGAGATTTTGGACTCTTTCACTGCACTTTCATAACCAAGTTAAATTAAAT 68634 23 100.0 55 ....................... CTACCCAATTTGGATTACTATTAATCTAGTCAACCCTTGTCTTGTTAAATTAAAT 68712 23 100.0 56 ....................... GCTACATCTGATACTGTGTAAACTAAACTTTCAACCTCTTTCATGTTAAATTAAAT 68791 23 100.0 58 ....................... TGAATTTATTTTATAGGAGAGTATTATAAAATATTTGTTATTCAATGTTAAATTAAAT 68872 23 91.3 54 G.......G.............. AGAATAGCAATAACTGCAACTATGTTTTTTACATTTATTAAAGTTAAATTAAAT 68949 23 91.3 55 G.......G.............. TCAGCTGCAGTCTTGGGAATCATAAAGTGCATTCCGTTTACATGTTAAATTAAAT 69027 23 82.6 55 .......ATTA............ ATGGATCCAATAATCCATATGGACGCCGCCCATTTTAAAGCAGGTTAAATTAAAT 69105 23 95.7 57 ........G.............. CCACCATAAGGGTGAGCAACATATACAAGTCTCTTTTTCATTTTGTTAAATTAAATA 69185 23 82.6 53 .TC.....G...A.......... ATAATTACGTTAGGTTTGGTACGTAATTACGTGCTTGATTAGTTAAATTAAAT 69261 22 95.7 55 .........-............. TGTCAAGCGTCATGAATAGCATTTTTTCAAAGCCGTTGGTGAGGTTAAATTAAAT 69338 23 91.3 55 G.......G.............. TTCCATGGATTATAAGTGTATACATGAGCCGTACCATCTGTATGTTAAATTAAAT 69416 22 82.6 56 ......A.T.-....T....... GAATTGGCTTGTAGCATTTTATTAGTGATGATGTTATTGTCAAAGTTAAATTAAAT T [69421] 69495 22 78.3 0 ..-.....TT.......C....G | A [69506] ========== ====== ====== ====== ======================= ========================================================== ================== 18 23 94.0 55 AATCCCCTAATGGGGACGGAAAC # Left flank : GCGTTTGAAGCATTGCTTAATAGGAAACAATATGATGCTATGATGCGGCGAGCTAGTAAGATGATTAATCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATCTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGTATCGTACTTTAAATATAAATAGTTACTCTCGATTAATACTGTTACGATGTAGAGGTGTAATTAATAATAATAGAATCATTAATATTGGTAAAAGTATTTCAAGACTTGATGTTTTATATTGATGATTCTATTATTGTATTATCTATTTTCTTATATGATATAATGGGTCTAGAATTTAACTTCTGATAAATTAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGGCGTTATTTTAGCTTGCTAAAGTGCCTTTTAGGATCAATTTGCAATCTCCGCCGGTTTTTGCATTTTAGAACCAGTAAATATCTGTTGTTTCAAAGACAGGGTTAAATTAAAT # Right flank : GGCACTACCTTATTATTGTAGGTAGTGCCTTATGTATAATCTAAGGGTTTAATTGTTTTGTATTATAAATACTTAAGGTTTTGTTACTTTCTCTCTTAAAATGAGGGGTGGATTATTGAAATAAAATAAGTGATATTTATAATATATTAAGTAATTATATTTATTATTTAGTGTGTATAAGATTGGGGAGCTTTCAAAGGATAAATATCATTTGCTATTTCCTAAGATTTCATTATTTTCGAGATGCGCTCGATGTTACGACTCGTCTGACTATCTTTTAATATTATAGAGATAAAGGTATATCATCAAATTAAGATGAATATGTACAATTGTATTAGATTAGTATTCTTAAACGGATTTATTTTGAGTACTGACAATTAAATTTAATAATGAGATGTATAATAAAGTATAGTGATTCAATCAACATAATTTGTATTAGGTATACTCTTGGCAAACCGCATATATGAATGTGTATGGTGTGCAATTCGATGATGTAGTTG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.75, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //