Array 1 40874-42030 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUB01000042.1 Streptococcus mitis bv. 2 str. SK95 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 40874 29 100.0 43 ............................. TATTTAGCTGCTCAATAAATGAACTAAAGCTAGTATCTGAAGA 40946 29 100.0 47 ............................. CTTATTGCCACGAGAATAAAACTTTTCAGCGACTTCCCTACCTAAAA 41022 29 100.0 39 ............................. AAAAGGAAAACTCCCTCTTTCCAATCTGGCAGATCAATT 41090 29 100.0 48 ............................. ATTTTTTAGTATAGGGATAGTTAGCGTATGCCATAACCCTCAAGCTAT 41167 29 96.6 49 ...C......................... GCGTGAGGCCGCCTGAACCCAGCGACGTTTCTAAATAATGCCTTGGCCT 41245 29 96.6 45 ...C......................... GCAATTACACGTTTAGCAAAACTTGGTGTGAAGTTTTTGATGATG 41319 29 96.6 49 ...C......................... GCTACAGACAATAGAAGATATGAAAAAATCTTTTTCATTTTTTAATACC 41397 29 100.0 51 ............................. ATTCTTCGATCTTTTTGAAGAACTTTCGACCTTCTTTTATGGCAAAACCGT 41477 29 100.0 47 ............................. TCTCTAAACCTTGCCAAAAAATTGCGTCGTCGTTTGGGTGACGAAAA 41553 29 100.0 44 ............................. ATCAGTTATAATCATAATCGCTTCCTCCGAATGTTCTATTTTCG 41626 29 96.6 47 ...C......................... TTGCGTTTTGGCGATTTTTCTGACTTAAAATGTCTGACTCCTTGACT 41702 29 96.6 49 ..A.......................... GATGTAAGTTGTCTTATTGCCATCTTGTTCTGTTTTCTTCAATACGTAA 41780 29 96.6 48 ..A.......................... TTGTATTAACTGGTTTCATACCGCTTTCAGACGATTTTGGTTGATAAG 41857 29 100.0 44 ............................. ATTTGCACCCGCAAGCCTGCCATTGTTTGAGGCGACTGTTAATT 41930 29 100.0 43 ............................. CTTGCCTGAGTAGTCTCCGTACCGTTTGAAGATCCGTCATTTT 42002 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= =================================================== ================== 16 29 97.9 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATCAATACTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATACGGCAGTTTAAGAGAATATTGCAGCAAGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTGTCAACCAAGCGTTTTATGAGTGATGGGTACAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GCTGCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGAAAGTGCTTTCTTGGGGAGATATTTGAATCGGAGGTTATTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGTGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAACCCTGAACTGGTCACAAACTATGCTTATACTGGCTTAAAAAAAGGTGACGTGTATCGGATTTCTTATTATAATCAAATCGACAAACTTGAGTGTTATGACCTGACACTTGACTATATCATGCTTCGTTATTTTCCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGAAAATT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 44099-44265 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUB01000042.1 Streptococcus mitis bv. 2 str. SK95 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 44099 25 100.0 49 ......................... AGACTCTCCTGAATAAATCAGTACAACCGGCTTAGTTTCGTCGTCTTCC 44173 25 96.0 43 ...C..................... AGACTATACACCATCAGCTTTTACACCCATCCAATAGGTTTTC 44241 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================= ================== 3 25 98.7 46 GTTATACCTTACCTATAAGGAATTG # Left flank : CATTACCTTGATATGTGATATTCATCGCAAGCGCGTGGCTAAGGTTTTGAAAACTTGCCGAAAATACTTGGTTCATGTGCAAAAGTCGGTCTTTGAAGGGCATATTACTCCAGCCAAGCTGAGCGCTTTACAAAAAGAATTAGCCAATATTATAGAACCTCAGACAGATTCTGTACAGATTTATCAGTTGGAATCCCCAAAATACACCAAGAAGATCCAAATCGGTATGGTAGAATCCAATGACTTTATTCTTTAGGGATTAAAGTGATGTCATAGTCAGTCATTCAATCGCATGAAGTGTCCTCTCCATGCGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCGATCTTTTCGATATTTTGTATCTTTTTCAAAAGCTGTCAATCAAGCTGTTTATAAGCGTTAGGACAAAAAAGATCGACCGACCTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTCCGTGTGTCTTTGTCTGTCTTCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTAGGAAGCATGAGAATTTGTTCGCCTTTTGTTTGGTAGGATTAGTTGAAATTTTTAGAAAACACAACATATAAATGTGAATAAAAGTTGTAGTAGAGTCCCTTACTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTAGGAGAGTTTTTTCCGTGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGGTCAGTTTTTTGATACTTCATGATAGTGTTGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTATTTTCTATTTCATTTACCGAAAGCCACTGTAATACAGTGTCCTATCCTACTGTACTAGTCCTTTTTCTGCTTATCTATGGTATAATAGAAGGTAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGACGGAGAG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //