Array 1 2608-1982 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000003.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2607 30 100.0 36 .............................. GTCAGCGACTGCCGGATCTCGAGGAAACTCGTCTCG 2541 30 100.0 36 .............................. TCGTAGATGGCCTGCGACTTGCGGGCGACCTCGGTG 2475 30 100.0 36 .............................. GTGTCGCCGACGACGGGGTGACCCTCGTCAACCGCG 2409 30 100.0 37 .............................. TGGAAGAGCTCCACGTACTGCTCGGTGTCCCGCTGCG 2342 30 100.0 36 .............................. ATCCCGCTCGCCCGCCGGAAGGGGAAGTGACCATGT 2276 30 100.0 37 .............................. CGCAGATCGTCCGCTGGCCGGCCCCGGACGGCCCGGT 2209 30 100.0 36 .............................. GAGTACAGGTAGGTGGCGCCGGGCCCGTAGGTGCTG 2143 30 96.7 36 ......................A....... CCGACCCAGGCGACCTCACCCGCGCGGGGCTTGCCG 2077 30 100.0 36 .............................. TCGACGAGGGTGACGCGGGCGCCGGGCTTGCCCCAC 2011 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTCCTCATCGCCCCTTCGAGGGGTCGCAAC # Left flank : GGCAGTAGTGGCGTCCTTGTGCCTGGTCGGCCGGGCTGGGGCGGGCGGAGGATTTGACCTCGTGTACCCAGTGGCTGCCGTCGATGAAGTCCAGTCGGGCGGCGCCGAGATCGACGGGGGTGTTGCGGGTGTAGGAGGTGTCGTGGACGGCTTCGCCCAGTTGGACGGTGGTGCTGAGGTGCTCGGGGCGGATGCCGTGCAGGTAGAGCCAGAGTTGTCGGGGGCAGTGGTAGAGGTACTTGATATGGACGCCGCCGACATCTTCCGTATCGATCACAGGACTTCCCCGGGGTGGTAGGTCTGCTGAGGCAGGCCGCTGACAGTGAGCAGGCCGAGAACGGGGTCGTAGTCTGCGTCGACGATGCGGACCTTGAGCTGTTGTTCGTAGCGGGTGAGGGCTCCGGCCCAGTGCGGCATGGGGATCAGGTACTCGTCCGCGAGGAGCCTGCCGGTCTTGGGGTTCCCTGTGGCTTCGTCGAGGGCGGCGGCGTAGGCGTCGC # Right flank : ACGTTGACGACGGCCTCGGGGACCGGTTTGCCACAACGCACTGACTTCGGCGAGGGCGCCGCGGCCGTCGTTCTTTGGCAGGGCGGCGCGGCTCTGGACGTCGGCAGCGACCGCGCGGGCGTGCCCGGTAAGCTGGAGGGCGATCTGCTACGACGCGGGCCGGGCGGCCAAGCGCCTGAAGGGGCGCTGTCACGTTGTTGAGTGTGTGAGTGCCTGACGGCGCGTCGGGGCGTGGCGGGGCCGGGTTTCGGGCCGGTGCTCAGGCCGCGGCGGGCTGGCCGGCGGCGCCGGTGGCCTGGTCCCAGATCGCGAAGCGGATGGTCATCTCGGCGCGGTAGCTGGGGGCGGTCATCAGGTGGCGGCGGGGCCGGAAGTGCGGTGAGATGCCGCTGAACGCGGACAGGAACCGCTGGGCCCCACCGGTACTGCGGAAGCCCTTCATCGCGCGTTCCCGCTGCCTCGTCGGCTGATGACTGTTCTCGCCCCGATTGTTCAGGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTTCGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4725-5088 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000003.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4725 31 100.0 36 ............................... CTACGACCAGCCGTCCGCCGACCGCAGGAAAACCAA 4792 31 100.0 38 ............................... CCTTGTCTCCTGGGGTGCCGGGTGCGCCGTCCTGGCGT 4861 31 100.0 35 ............................... TGTACAGGTAGGTGGCGCCGGGTCCGTAGGTGCTG 4927 31 96.8 35 ..............................A GGCCGGGGATTCCGTCGGCGGGCTGGCCCGGGCGG 4993 31 87.1 34 .....T..C................A....T ACAGGTCCGCGACCGCCGCGGCGAGGTCCTCGGC 5058 30 77.4 0 ........C.....-...C.....GA.GT.. | T [5079] ========== ====== ====== ====== =============================== ====================================== ================== 6 31 93.5 36 GTCCTCATTGCCCCTTCGAGGGGTCGCAACC # Left flank : ACGAACTCCTCTACCTCGACGCCCTCGCCCTGACCCGGCACTGCCTGGAAGGCACCCCATACAAACCCTTCAGAATCTGGTGGTGACCAAACCGTGTACGTGGTCGTCGTCTACGACACCCTCGCAAAACGCAACTCCCACATCCTGCGAACCTGCCGCCAGTACCTCCACCACGTCCAGCGCAGCGTCTTCGAAGGCCAGCTCAGTGACGCTCAGCTCCGCCGCTTCCAAGCCGCCGTCGAATCCGTCCTCGACCTGACGTACGACAACGTCCTCGTCTACACCTTCCCACCCGGTACCAGCCCACAACGCCTCGAATGGGGCGCAGCCGAACCAGCTCCCAGCGACGTGCTGTAATCAGGATGAGATCGGAAACCGAACACTGGCACGCACTGAATTGCAGCGCCACACCGGGGCGGAGGACGCTACCGGAGGTCTGCTGCAAAATGTGGCGACGGATGCTCTGCAAGACCACCTGCCACCAGGGCCTTTACTGTGGG # Right flank : CTTCATGCTCACCCAACGTCCAGCTCGGTCAGTACGGCCCGGAGCGACAGCGGCTCCGGGCGATCCTCTATGAAAACCGCTGCCACCGGGGCCGGGCGACCTGCCACCATCAGGCAAGAGTTCAATCAGGCGAGGAACGATGGCCAACTTCCAATACGGCTTCAACGACTTCAACGTCGACTTCCGGGCGCAGCAGAACGTGACCTTCACCCAGGGATGGGACGTACACCGTCTCGCCCTGACCTTCGAGGTGACCGCCCGCGGCGACTACGCCGTGGACGCGCCGTTCCTCGTCTCCGGCAGCCTCTGGACGTACGAGATGCCCAGCCCCGCGAGCTGGATCGGAGTCCTGCACGCCCCCTCGGGACCGGTCGGGCTGAAGGCGTTCATGCAGACGCTCACGCTGGAGACGACCGTGACCGACCAGCAGCTGCGCGGCCTGGAGAAGCTGCGCGCGGGCGCCGACCTGTCCCTGCGCGCCCAACTCACCCTGACTGCTC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATTGCCCCTTCGAGGGGTCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 10659-9166 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000004.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10658 29 100.0 32 ............................. GGCGCGCACCGCGGGTGGGGGTGACGTTCGGT 10597 29 100.0 32 ............................. GCGCTCATGACGGCATCGCGCAGCGTGCCCTT 10536 29 100.0 32 ............................. CCGTGGCCGACGTCCTCCCCCGTCGGTCGCAG 10475 29 100.0 32 ............................. GGCTCCCGGTGGCTAGACCGGGGGCCGTTTTG 10414 29 100.0 32 ............................. CCTGGCTCGCCACGATGAGCCCGCAGCAACTC 10353 29 100.0 32 ............................. CCCGCCGACATGACCGTCCCCGACAAGACGTG 10292 29 100.0 32 ............................. CAGTTGAAAGCACCATTGGCGATGTCAGGGAT 10231 29 100.0 32 ............................. ATGGGGTGGCAGCGCATGATGCGGTTCTGCTG 10170 29 100.0 32 ............................. GGCATGACGGGCCGCGCCGCGGGCTTCGACAT 10109 29 96.6 32 ............................A TCTCGTCGTTGCTCACAGGAGGGTCTCCGGGT 10048 29 100.0 32 ............................. TACGGCCCCCCAGGTCAGAGGGGGTGCCTACA 9987 29 100.0 32 ............................. GAGAAACAACGGACCCCCACGCGCGCAGAAAC 9926 29 100.0 32 ............................. AGGACGTCGGCGTCGGACGCCGTCTGCTTGAC 9865 29 100.0 32 ............................. AGGACGTCGGCGTCGGACGCCGTCTGCTTGAC 9804 29 100.0 32 ............................. TCGAAACGCGGTCTGACGGCTCGTCTCAACGC 9743 29 100.0 32 ............................. CGCCCACCACCGAGGAGCGGCTCACCGCTCTG 9682 29 100.0 32 ............................. ACGGCCGCCGCGGCGGGCCTGTCCTGGACGGG 9621 29 100.0 32 ............................. GAAATCGCCGCGCTCCGGCGTCGTGTCCTGGA 9560 29 96.6 32 A............................ GCGAACATCTGCACCGGCAGGGCGACCGCCGC 9499 29 100.0 32 ............................. TTCGGGACGTGGCTGCCCCAGCCGGTCCCGGC 9438 29 100.0 32 ............................. ACCGCGAGTGCCCGGTAGCACTCGGCCGCACC 9377 29 100.0 32 ............................. GAGTAGCCCACGTCGGACCAGCCGTTGCCGTC 9316 29 100.0 32 ............................. TCAAAGCGCAGGTGTTCCCCGACCAGTTCACC 9255 29 96.6 32 ..............T.............. ACCCGGGCCGAGGTCCTGATCTCCGAAGCCGT 9194 29 72.4 0 ........T..G..........GCAA.TT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCGGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCCAGCCACACGACGAGGGCCCGCGCGTCCGACTCGCCCTGCGGCAAGGCCTCGGCCACCAGCCGCCGCACCCCCACGGGCAGCCACCGGTCCCACAACAGGCCGGCCACCGCCGCGCTGTCCTCCATGTGCCGCCACAGCGGCAGCCACCCGTCGGTGTCCCGATCATGCTTGGCCCACACCGCCCGAGCCGGCCCCCCGAGCCGACACAGCAGGCCGGATCGGGGCATCCCCCCATTGGTCATGAGGGATTGATACAGGGAGAGACGGGCTCCACACACCAAAATAGGCAAAGAGACGGAAGCAGGGGCAGGAAGCGATATCGGGACTTACGATGACCGGCTTACCATCGCTTCACCGAGAAGCGCCCGCGAGACCGAATGGCACCACATGCCCTATTTGCCGAGATCTGCAAAAGTCTCCGAAACCACGTCCCCGCGAGAGTAAAACCGCAGGTCGCCCAGT # Right flank : CAAGGAGAGCCCCGTGTTATTTCGGGTGACCTTGGGACCTCTTCAGCGCATCGACAAAGGCAGCGAACGCAGGGCCGGGCACGGTCAGGGTGCCGCAGGTAGGACTTTTCGAGTCGCGGATGGCTACGCGCGGGTGGCATGGAGCAACCTCGACACAGGCATTGCCGTCGCCGCTACCCGAGTAGGACGACTTCTTCCAGAGGCCAGGGGTCGTCATCGCGGACCTCACAGCTCCTTCACCAGCCGGTGGATGAGATCACGGGAACGCCGAGGTTCGAGCGCCACCGCCTTCACTCTACGGAAAAGCGTTCGGAAGACACCGAGTTGCGCTTCACTCTCCACAAAGAGCGCCCCTTGAGGGCCGTCTCGGACCACCGTGTCCAACCTCGGAACAGTGCCGCCGACGTAGACCATGGCGGCGCTGATGTCCGCGAATTCCTCCAGGTCGAAAGGGATGACACGTACGGTCACGCAGTCGCTCTCCATCAGCTCCAGGAGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000061.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ ACTTGCCGGGGTCTTCCACACGTGGAATGGGC 61 29 100.0 32 ............................. ACGCGGAGCAGCTCGAGCGGGAGCGGCTCGAC 122 29 100.0 32 ............................. TGTTGGGAAGATATGGAATGGCAAACCCCCCT 183 29 100.0 33 ............................. GAGGACGTCCGCAACTACTGCGAGGCAGCGCGG 245 29 100.0 32 ............................. GGTGGCTCGCCACGTTCGAGGCTGAGAACGTC 306 29 100.0 32 ............................. GGCACCGCCCCCATCCCCGGAAAGCTGACCGT 367 29 100.0 32 ............................. CTCGCCTACAACGGCACCGGCCGGCCCGAACC 428 29 96.6 32 .........................C... GCGATCAAGCCCGCCTGGGACGGCATCGTCTC 489 29 96.6 32 .........................C... GTCTCCGCGTGCTCGGCAACGAGGCGCAGCAC 550 29 96.6 32 .........................C... GGGACCAGGCCCGAGCCGAGAAGGCCGACCTG 611 29 93.1 32 .........................C..A GTCAACCCGAGGTGTTCGGCGGTACGCGAGAT 672 29 96.6 32 ..........T.................. ATCACGCCGGCACCGCACGCAGGGTCGATGAC 733 29 96.6 32 ............................T ACCGAGGACCTCCAGGCTGGCCGGGACTACCA 794 29 96.6 0 ........T.................... | G [811] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : | # Right flank : CTGCGGATACGGGCGGGCGCCCCTCAGCGCTGGCAGATGAGGATGCCACCCAGGCACGTGACCTCAAAGGCCCCGAGCTGGGCGATGTGATCGACAAGGATTCTGCGGGCCCGCTCGATCGTTGCCTCGAAGGGCACATCGTGCTGGTCTGCCCACGCCTGATAGGAGGTCATGTGCGCGATGACCGGGTCGGGATCGTGGACCGTGATGGTGCCGGGCAGTTCGATCGTCTCCACGCGACCGAACTCCTCCCCCAGGAAGGCCGGGGCCTTCTCCAGCGTGAAGCGGGCGCTGAGTGAGATACGGTCCGGGCCGCGTCCGGTGCCAAGGACATCGCCTGCAGCTCGTTGCCACAGGTCATCAAGTTCGGTCTTGTCCCGGTCGCTGTTGGTGGAGGTGATCACCAGACCGTCACTCACGACGACGCGGGACAGTTCCCGCACCGCCTGGGGGATGTCCGGGACGTGGTACAGCATGTGCAGCGCCAGGGCTGCGTCGAC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5497-6013 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000061.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5497 29 96.6 32 ............................A GACACCTGGAGCCGGTGGGCGACCGGGAAACA 5558 29 100.0 32 ............................. AGCGGCCCGTCGTCGCCCTGCCCGGCCGGGGG 5619 29 100.0 32 ............................. TACGTGCACGGACTTGTGCCCGGACTGCACGA 5680 29 100.0 32 ............................. AACCAGCCCAACGCGTCGTCCAACCGTCGTCG 5741 29 100.0 32 ............................. GCCGCCGTCGGCGAACCGCTGCACGGGCAACT 5802 29 100.0 32 ............................. AACGGGATGCGCTGCCACCGGACCGCCACCCA 5863 29 100.0 32 ............................. AGGGTGGCCCGTTCCATGCGGTCCAGGCGGTT 5924 29 96.6 32 ............................G CCCTGGGGGCACAGGGCGTGCCAGGCGAGGGT 5985 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCAAGGGCACCGACGAGACCTACGAGGTCAAGGTCAAGCGGGTCACCGAGTACCCCGACTTCGAGACCCTGCTCGACGGCGAGGGCGCCACCAACATCAACCCGACCGCCACCCGCGACGAGCAGTTGGTCAACATCCGCACCATCTACCCACCCGAGAAGGAAACCCTCGGAACCCTTGCCATCGAGATCGAACAGCTTCAGAACCGCATCTGAGCCAGAACGACAGGCAGTCTGCTTGCTCTGTTCTTGACCGGCGTCGCCGCCTCATCCCAGTGGACCGTGTAGTCACACCAGCGGGTGAGGAGGAGGGGACGTGGCGCACGCTACTGAGTCGTAATGCCGCGGCCGTTCCGGCCAGCACATAGAATTGATCTTTTACGTTGAGATCAGCCCAGGCACGCGGGGCGAGGTGAAAAAGGTTAAATGTCTTACTTGCCGGTTTCCGTGAAAGTGTGTGAAACCACGCCCTCGCCACGATAAAACCCCAGGTCACGCAGT # Right flank : CGACTTGGTACTGCTTCTGGTGGGGACTCTGGCCGAGACCCGGTCCACGCTCAGGCACGGTGGGAAGCAGAGGTGGGTGAGGAGGGACGGGAAGGAGGAGTGGACGAGCCAGTCCGGCATGCACTCGCCCGGCGCTCGGTGAGCGTGGTCGCGAGGCCGGGACAGGGGGAGTCCGGCTCTGGGGTTGCAGTTGTCGCTGCGGCAGCTTCTACCGTCCTGAGCAGGGCCGGAGAGACCGCCCGGTGACGGGTTTGTGAGGGAGACGGCGATGGACTGGCCGATCGCGGAGGTCGCCCGGATGTCGGGCGTGACCGCCCGGACCCTGCGGCACTACGACGAGATCGGCCTGCTGCCGCCCGCCCGGATCGGGACCAATGGCCACCGCTACTACGAGGAGCGCCAGCTGCTGCGGCTGCAGCAGATCCTCGTACTGCGGGCGCTGGGTGTGGGGCTTCCCGAGATCGGCCGGATCCTGGCCGAGCGGATCGACGAGGTGGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31291-27967 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000065.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31290 29 100.0 32 ............................. GCGTACTGGGAATCCCTGTACACCACCACGAC 31229 29 100.0 32 ............................. GCCAAGGTTCGTGCCGACATCAACCAGCTCGA 31168 29 96.6 32 ...............C............. GCATTCCCCGATGAGCCTCTTCCGCCGCACCC 31107 29 100.0 32 ............................. TTCGGGGTGTACGCCCCGGCCGACCGCACCAG 31046 29 100.0 32 ............................. GCAACGTGCCGGGCGTTGTGCCTGCGGCCGGA 30985 29 100.0 32 ............................. TGGGCGAGGGCGATGTCGAGGTAGACGGCCTC 30924 29 100.0 32 ............................. TCGGCAGCGGCCTGCAGTTCCAGGTGTTCGCT 30863 29 100.0 32 ............................. CAGCCGCGCGTCTTCCGGATCACCCGCTGGGC 30802 29 100.0 32 ............................. GCCGAGTGCGGGCCGTCCGGGACCGCGAGGGC 30741 29 100.0 32 ............................. GACCACCTACCATGCGCATTTACGCGAAGTAC 30680 29 100.0 32 ............................. CGGGCCGGGAGCTTCGCGTTCTCCTCGATGGA 30619 29 100.0 32 ............................. TCCTGTGGTCCAACACCCAGCTTGGCGACCAA 30558 29 100.0 32 ............................. GAGACCTGACCATGCGCAGCGACGACATCCTC 30497 29 96.6 32 ............................A GGAACGAGGAAGTCATGACGACACGGTTCGAC 30436 29 100.0 32 ............................. GCGTCGTACTTCTCGCGCAGGGCGTCCCTGGC 30375 29 100.0 32 ............................. GCGAGCGACGGCGGGAACACCGTCCGGCAGTA 30314 29 100.0 32 ............................. AGTGGATTGGCGACGCACGGCCGTTCTTCCAG 30253 29 100.0 32 ............................. CCAGTGCCGTCGTTTCCCTCATGGATGAGATC 30192 29 100.0 32 ............................. GTCCAGGGCCTCGCCATGTAGTCGTGGAAGTC 30131 29 100.0 32 ............................. ACCCGAACGCCGACCTGTGGCGCGTCGGAATG 30070 29 100.0 32 ............................. GTGACAGCCGAGTACAAGACGGGCGGGACGTC 30009 29 100.0 32 ............................. GCGGTCGCGTGATGCCCACCTGGCGTAACGAG 29948 29 100.0 32 ............................. GCGGTCGCGTGATGCCCACCTGGCGTAACGAG 29887 29 100.0 32 ............................. CCGAAGGGCGTGACATCGCGTTCGACAACTTC 29826 29 100.0 32 ............................. CCCGGGGTTTTCGTTGCCGCGGCGCAGACGCA 29765 29 100.0 32 ............................. GCGATCCTCCGGTCCACCGAGTGCGTCGTCAC 29704 29 100.0 32 ............................. GCGATCATCGAGACGATGAGGAGGCCGGGCAG 29643 29 100.0 32 ............................. CGGCGCATCCCGTACGCCGTGGTGAACCCGGA 29582 29 100.0 32 ............................. TGGTGGTGGCGGAGTCACTGGTACGAGGTGCT 29521 29 100.0 32 ............................. CAGATCGACACCCGGTTCGGCTTCCGCGGCAA 29460 29 100.0 32 ............................. CCGTCGCGCGCCCACTTCAGGTCCGAGCATCG 29399 29 100.0 32 ............................. CATCCTCGGAGGTGGCGGCGTATTCGTAGCCC 29338 29 100.0 32 ............................. CGTGGGTGGAGCACCCGTATTTCCGGTATCGC 29277 29 100.0 32 ............................. ACAATCACGGGCGGCACCGTGACCGGCGCTCT 29216 29 100.0 32 ............................. CTGCGCCGCTGGGGACGCGCCCGGCTGGCCGC 29155 29 100.0 32 ............................. TCGATGGCCCGGTCCAGAGCGGACCAGAGCAC 29094 29 100.0 32 ............................. GACCATGAGGTCGTTGTCGGGGGTGTCGGCGT 29033 29 100.0 32 ............................. TCCGCCACCCGGGCTCACAGCGACGTCGTCCA 28972 29 100.0 32 ............................. GCGTTGTAGCCGGTGGTGCAGGCGACCCGGGC 28911 29 100.0 32 ............................. CTGGATCCTCAGCCGATCGAGGAGTGAGCTCA 28850 29 96.6 33 ............................A GTGGGTCGCGCGTCCTGTGGATAACCCGGTGCC 28788 29 100.0 32 ............................. ATCGACGACAACGCCTACCTGACGCTTCCCGG 28727 29 100.0 32 ............................. GAGCGCGATCACCTCGGGGCGGTGCTGCAGGA 28666 29 96.6 32 .............G............... AGCGTGGTCGGTTCGGTGGGGCGGCATGTGTG 28605 29 100.0 32 ............................. AACGCGTCGTCGCTCATCCGGTGCGCCAGCAG 28544 29 100.0 32 ............................. CTTCACGCATCCGGCCAGGGCTTCGCGCACCT 28483 29 100.0 32 ............................. GACTCACTCACCCGCCTGGGCAAGGCCTACGG 28422 29 100.0 32 ............................. CCGCGCAAGGGGTACGCGGCGCGCGCCACGGT 28361 29 96.6 32 ................G............ CGGCGGGGCCCGGCTTCGGCGATGCGGCGGAG 28300 29 100.0 32 ............................. CTGCTGCCGTTCGAGCCGCGCCGCAAGGAGGC 28239 29 100.0 32 ............................. CCTGGCGCAGCTCGACACCGACGACCGTCCGG 28178 29 96.6 32 ............................C TGGTGGGGGATCGGCCGGAACTCCTGGGAGTA 28117 29 96.6 32 .......T..................... CTGGTGTGGTCCTCGACGACGGGCCGCTCGTC 28056 28 96.6 32 .....................-....... GTCTTCTTGCAGCGGGCCTCCGCCTTGCGCGC 27996 29 93.1 0 .........................C..T | A [27972] ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.4 32 GTCCTCCCCACCGACGTGGGGGTGTTCCG # Left flank : GCCCAGCTCCGCGCTGAGGTACTGGCTGCCGTGCCAGGAGCAGAACTGAAACCCTGAGAGCTTGCCGATGTCATGCAGACCGGCACACAGCCCGACGACCGCCCTCGCACGTTCCAGCTCGCCCGCCAGTCCCATCCCGTCGGCGATCCGCAGACGCTGGTTCTCGGACAGGTAGGCATCCCAGAGGTGCAGCGCCATCGCGGCAGCGTCCAGGAGGTGCCGGATCAGCGGATACGGCGGCAGCCCCGGATCCAAACCTCTCGACTTCCCCCACACCGACTCATCCGGCGCTTCCCACTTCCCCGGCATCCTCGCCTCCTCACCCCAGCCAGCGGACCACGCCCCACTACTGGAGCCGGCATTCAACCACTCCCCACCGACAGCGCTGCAGTCGTCCGGCCCCGATATGGTGAAGACGTGCAGCTTCACCCGTCGCGACGCAGAGTCGCCCTCAATGCAAAGGAAGGGCAAAGCCCTTCTTGAGCCGCAGGTCAGGAAGG # Right flank : GGGGCAGGTAGGTCGACACGATGTTTCCGCCCGTCGTACCTGCACCCGCGAGGGTAAGTGCCCCGACCCCGACAGAGCAGCGCTGCGCGCAAGCGGTCGTCCCCGCACCCGCGGGGCGAGTCCGTACAGCCAGGCGCGGCGGTGGTAGACGGGCTATCTGTCCCTCAAACTACGGCCCTCAATTCCTCGTCCAAGAGGACCGCCGCTTTCGTGATGCTCCCAGGCATGAGGTGCCTGTACGTGCGGTAGGTGACCTCAATCGACTTATGCCCCATCCAATCGGCCACGTCGGTAATGGGTATGCCGTGGCTCAACGCGTTGGACGCGAAGAAGTGCCGGAAGCTGTACATGCCGACGCCTTCCGTCGGCGGGAGGGCCTTGAACAGCTTCGCGACCCGGTATCGCTCGTTCGGTTCACTGAAGGGGCCCTTGGGCCCCCTCAAGAGGTACCCGTCTTCCGTCGCCCCATGCTCGTCCGCGAACCGTTCGATGGCATCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCAACGTGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45938-46581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000065.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 45938 33 93.9 28 .............................AT.. GGGACGCCACGATCGCGGCCAACCCGGG 45999 33 90.9 28 .............................GTG. GATGGTGGCCGGGTGAGCGGGGCGGTTG 46060 33 87.9 29 ............................AGG.G GGCGCCCGGGTGGGCGGTCACCGCGACGG 46122 33 93.9 28 ..............................A.C AGGACTACGTTGCCCGGGCCCGCGGCCT 46183 33 100.0 28 ................................. CGTGCGCCCGCTTCCGCTCGTCGCCCTC 46244 33 87.9 28 .............................GAAG AGTGCACCGAGCTGCGTGAGGAACAGAC 46305 33 93.9 28 ..............................GT. ATCTGGTCTGGGCGACGTGGGAGAAGGC 46366 33 90.9 28 .............................C.GC TGAAGAACGGCTTCAGCACGGTGTCCCA 46427 33 90.9 28 .............................G.AC CGTCCAGAACCTCGAAGACGCCAACCGT 46488 33 90.9 28 .............................CGG. ACCAGCGGACCGGCCGGGTGTTTCCGTC 46549 33 90.9 0 .............................C.GG | ========== ====== ====== ====== ================================= ============================= ================== 11 33 92.0 28 GTCCTCCCCGCCGACGTGGGGGTGTTCCGTCCT # Left flank : GGACGTCCAGTCCCTGCTGACCCCGCCCCACACCCACACGACCACAGCCGACGATGACATTGACGAGGAACGCTCCGAACGGCGTGACGTGCGGATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTCCCAGCAGGCGTCAACTACGCCGAAGGAGGCGGCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTGCCCGGCATCTTCGTCGGCAGCGTCTCGGCCCGCGTCCGTGATGAACTCTGGAACGCCGTCACCGAAGTCGTGGGCAACGGCGCCGCCGTTCTTGTCCACCCCGCCGCCACGGAACAGGGCTACGCCATCCGCACCGCAGGAACCCGCCGCCGGGTCCCTGTCGACTTCGACGGCCTTACTCTGATCCGCATGACCGCCGCACCAAAGGTAAAGGAAATGCAATCCCCCTCTTAAGGTGCAGGTCAGGAAGG # Right flank : CCCCGCCGGCGCCGACCGTGGCGAGCCTGTCCTCCCCGCCGACGT # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGTGGGGGTGTTCCGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2251-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000633.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2250 24 82.1 33 ----.........A.............. GCACCGTCCAGAACCTCGAAGACGCCAACCGTG 2193 28 100.0 33 ............................ CGGTACCAGCGGACCGGCCGGGTGTTTCCGTCG 2132 28 100.0 0 ............................ - Deletion [2105] 2104 28 89.3 33 C.GG........................ CCCTCCGGCTTCTGCAACGTCTGACCGGAGGCG 2043 28 100.0 33 ............................ GAGGGCGGGCCGCACGGACCGGCGCCGCTGGGG 1982 28 100.0 33 ............................ CTGATGCCGCTCGACAGGTGGGGCTGGGTGTGG 1921 28 100.0 33 ............................ AAGCAGTCTGTCACGCTGAACGGCGTCGACCAG 1860 28 100.0 33 ............................ CATTACAGGACCGGCCCCGGCCCGAAGTGGTCG 1799 28 100.0 33 ............................ CATCTGCTGTCCGGCATCCCGTACTGCAGCGTG 1738 28 100.0 33 ............................ CTGCGCCGCGACCTGGGCGCGGTGCTCGACTCG 1677 28 100.0 33 ............................ TCCAGGACCACCAATTGGGACCCGTTGTGCAGG 1616 28 100.0 33 ............................ TCCCGGTGCGCTAACACCGGGCCCTCTCAGTAG 1555 28 100.0 33 ............................ ACCGGCACCGTCTTCTACGACGAGACCGAGGCG 1494 28 100.0 34 ............................ GCCGCATCAACAAGACCACCGACCGGACCCGGAG 1432 28 100.0 33 ............................ ATCGTGGAGTCCGGGCCGGTGGCGGCCTGGGTG 1371 28 100.0 33 ............................ CGTGCTTCGAGGGAGGCGAGCATCGAGATGGTG 1310 28 100.0 33 ............................ CACACCGCCGCCGAACTCTCCACCCACCTCGGG 1249 28 100.0 33 ............................ CCATGAGCAACAAGCCTGAGAAGATCGTCCACG 1188 28 100.0 33 ............................ ATCCATGGCCGTAGCGCCATGCAGATCGCAGAG 1127 28 100.0 33 ............................ TCCGTCTTGCCAGGCTCCGCGGACTCGAGCAGG 1066 28 100.0 33 ............................ GAGAGGGAGGAGCTCGGCAGGAAGAACGCGGCG 1005 28 100.0 33 ............................ TGGATGGCGGCGGACGGGGAGATGATCGACTGG 944 28 100.0 33 ............................ GCATGGAGACCTCCGGGAGTTCGTACGGGAGTG A [921] 882 28 96.4 33 ............G............... GGACTGTCCCAGGACCTGATCAGCCAGCTGGTG 821 28 100.0 33 ............................ CGGATCGCGTCGGCCGGGTCCATCTCGGCGAAG 760 28 100.0 33 ............................ ATCACCAAGGCGCAGGGCCGGTGGATCGCGCGG 699 28 100.0 33 ............................ ACGCCCGCGGCGCTGCCGCAGCACGGCCCGAAG 638 28 100.0 33 ............................ ACGCCCGCGGCGCTGCCGCAGCACGGCCCGAAG 577 28 100.0 33 ............................ CTGAACAAGAACACGCCGATGCGGGTGTCGGTG 516 28 100.0 33 ............................ GTCCACATCTCGTCCGTCAGCCCGTACGCCTCG 455 28 100.0 33 ............................ AGCTTCGTGTACTCCGCGACCCGCTTCCGGTCG 394 28 100.0 33 ............................ GCGCTGGGCGCCGCACTCTTCCCCCGGGACCGG 333 28 100.0 33 ............................ CGGTCGTTGGTCGGGCCGCGCTGGTCGAGGTGG 272 28 100.0 33 ............................ GCGCTCGCGCCGACGGCGAAGGCCACGCTCGCG 211 28 100.0 33 ............................ TCGGGCAGGTAGGGGCGGCGGTTCTCGCCGACG 150 28 100.0 33 ............................ GACGGGTCCTTCCGTAAGAAGCGCCGGGATGCG 89 28 92.9 33 .T.............C............ TCCACGTGGATCCAGGCGCACGCCACGCCCCGG 28 28 96.4 0 ...............C............ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 98.9 32 TCCTCCCCGCCGACGTGGGGGTGTTCCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1325-2022 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000105.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1325 37 89.2 40 .C.............C.....C..T............ CACGAGTACATGGGGCTGCCGTGGACGTTCGTCAACGGAG 1402 37 91.9 35 C.......G......C..................... GCCGTCCGCTCATGCTCCTCGACGCGGATCTTGAA 1474 37 94.6 36 ...............C......G.............. AAGCGGCACGGGCGGCCACCCCTCCCCTGCGTGCGC 1547 37 94.6 36 ...............C..............C...... GGCCTCGTGCTGGTCGTAGGTCAGACCGCAGTCACA 1620 37 100.0 38 ..................................... CTCGTCTACGACCGACCGACGCGGGAGGCGCCGTTCAA 1695 37 94.6 35 ...............C......G.............. GACCTAGCCGTCATCGACCCGGCGTGCGGAGCCGG 1767 37 94.6 36 ........G......C..................... CCGGAGACCCGCGATGAACGCCACCAGCACCAGCAC 1840 37 100.0 36 ..................................... TGGACGAACACGTCCCCGATGGACGGGCTCACCGGG 1913 37 100.0 36 ..................................... CCCGAGCCCGTGCAGGGCACCGTCAACCCGCCCGCA 1986 37 94.6 0 ...............C.A................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 95.4 37 GTGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Left flank : GCCGGCCGCGGTCGGCTCCAGCCGGGCTGCATCGTGCACTCGGATCGCGGCAGTGAGTACACGTCCGAGGAACTCCGGCGGGAGATAGGCCGGTTGAAACTGCGGCAGAGCATGGGCCGGACCGGCTCGTGCTTCGATAATGCCGTCGCCGAGTCGTTCTTCGCAGTACTGAAGGAAGAGATCGGCACCCGCCGCTGGCCCGACCGAGCCACCGCCCGCGCCGAGATCTTCACCTTTATCGAGACCTTCTACAACCGCAAGCGGCTACGGAAGCACCCGCACTGGGGCTACCTGACCCCGCTGGAGATCCGGCAGCGGCACGAGCAAGGACATGCCCTCGCGGCGTAAGCATCGAGTGTCCAACGTCACGGGGAAAGTCCACCGGTGACCTATACGAATGGACAGGCCCCTACCACCCACAACGAGGAATCGAACCCGCCCCGTAGTGAAATCGGCAGCGGCCGAAGGCCCCACCGATCAATACAGTGTTCCGGGACAGA # Right flank : CGCGGAGACCGTCCGCCTCGTGGCCGACGGAACGTCGCCGCTGGACTTCCTGCCGTACCGGGAGGGCAAGCCATTGCCCGGCGGCTTCAAGCTCGGCATCAACCTGGACCTGGTCAAGCACAAGGGCACCCAGACCGTCCTGTGGGGCGAAGAGGTTCGCGAGCGGTTTAACATGCCGGAGCTCAACCTTGCCCGGTACATCAAGGACGCCATCCCACCGAGTCGACAACAGGGAGTAAAAGAGCCCCGCATGGCCATCGCCAGGGAGGGCATGGACGCCGCGGCGCAGCAGGCGTTCACCCGCCCCATCCCCAAGTCGGCCGGGGCGCAGAGGCGCTACCTGGTCAGGCAGCTCAAGGGCACCCGCGCGGTGGCCGACGCGCTCGGCGTCACCCAGCGCACCGTGGAGCGGTACGTGAAAGACCAGATCCGCCGGCCCCGCGCCGACCTCGCCCGACGCCTGGAGGATGCGGTGCGCGCCCGATGGCAGCCCCGTATCC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6105-8520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQT01000104.1 Streptomyces hirsutus strain NRRL B-2713 B2713_contig_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================== ================== 6105 37 94.6 39 G..................A................. GGCACCAAAGCTGAAGAAATGGGAGACGCGCTGTTCGCG 6181 36 83.8 35 ........T..GA.G.-.....G.............. AATCTTGATCCCAAGCAGGTCACCATTGCAGCCTT T [6192] 6253 35 83.8 34 G.A.........TC.--.................... ATCCACAACCCCGCTATCGCCCACGACATCCGAG 6322 37 89.2 36 ..........T........A..........CT..... GGGCAGGCGACGCAGGACACGTCGGCGAAGCTGGAC 6395 37 67.6 70 ....T.........GT.....A.GGAG...CT.T..G CCGCTCGTTTGACAGACCCACCAAGGATCGCAACTCGAAGCCCTCGACGCAGTCGCCGGCGTCGGCCCAG GAC [6415] 6505 37 89.2 36 G......C...T..........G.............. TGGCAACGGTCATCCATGGACGCCTACTCAGCGGCC 6578 37 91.9 37 ..............T.....T..T............. AGCGCGTCCATGTCCGCGTTCGTGAACCGGACCTCGG 6652 37 89.2 36 ...........T..T.A...........A........ CAACGCGGCATGATTCTGGAGTTTGGCGCCTTTGAG 6725 37 86.5 38 .......G.......T..A...G..A........... ACCCACAACCCGGGTGAGAACGAGGAAGTGGCGTACAC 6800 37 73.0 36 G....A..TA..TA...T.AT....A........... CTGTTCGATGAGGATTCCGACGTCATCTTCGATAGC 6873 37 78.4 36 .......C..TT..T...A.A.G......G....... CGTACGGACGTCGACACGGGCGAGCAGCGCGTGCGC 6946 37 89.2 37 ....T....T..T..........T............. CTCGCCTGCTTCGGCCTCACCATCGGCCTGGCTGCCG 7020 37 86.5 37 .......C..T...T......A..............T CCCCCCTCGGGAATCCCGTACTTGTCCGGCACCCCGC 7094 37 94.6 37 ....................T...........A.... GCTGTGACCTGGGTTTCGCCGGGTGCGGCTCGGTAGG 7168 37 91.9 38 ..............T...A......A........... AAGCGGGACGCCCCGAAGAAGGGCACGCCCGTCTCGTA 7243 37 94.6 36 G............C....................... GCCGACGGTGGCATGGTCTTCGGGCCGACACGCGCC 7316 37 94.6 36 .................A.......A........... CAGATCCTCTACCGGCTCTGGGACCTGGAGGTTCAG 7389 37 91.9 37 ............T.......T...........A.... ACGCCGACCGTTCCCGGCGAGATCACCGCCGCCGACA 7463 37 94.6 35 .........A..........T................ ATGTAGCGGAGGTGGACCTTGTTGGCGACGCCGTA 7535 37 94.6 38 ...............T...A................. CAGGTGGACGGCTACCTCAGCGGTGCCCTGCTGCGGGT 7610 37 94.6 35 ..............T.A.................... ATCCTGGGGGGTTCCACGGTGATCGCGGCATCCTG 7682 37 91.9 35 .................A.A........A........ ATCACCCCCGACGGGCTCGAGGAGGCGCCAGAGGA 7754 37 89.2 37 .......C........A........A.........G. CGGGTGTCGGCGTCCGTCCACGTCGGGCCAGGGCCTA 7828 37 94.6 36 ............................A...T.... GGCGATGGGTGGAAGCCGGACGACTTCGCCGGACTC 7901 37 94.6 35 ................AT................... ACCTGGCGCTGGTCCTGGATGACGGTGCCGGTGTA 7973 37 94.6 36 ......................G.........A.... GCAGACCTCATCCGCAGGCGCCGCGCGGAACTGAGT 8046 37 86.5 36 .C......T.T....T....T................ CAAGTGGACGGCTATCTGTGGGGTGCGCTCGTCCGC 8119 37 81.1 36 G......CT.TT..........G.......C...... GGAATGGCCCGGCCCTCGTACGCCTTCGGCAGGCCA 8192 37 89.2 35 T.....A.............T..T............. CGCCTTACCGCGTAGTCGCGGAGTTCCTGCAGGCC 8264 37 89.2 37 .....A........T.....T.............G.. GCCGCGCCGGCCGTGCCGCCGACCGCGGTCTCCCACA 8338 37 100.0 36 ..................................... AACCAGCACAAGGACTATGCTCAGCGGAACCTCGTC 8411 37 97.3 37 ............T........................ GAGAGCGACCGTGCCGGCGAGCAGTGGAAGGAAACGC 8485 36 86.5 0 .....-........T..A..............C...T | ========== ====== ====== ====== ===================================== ====================================================================== ================== 33 37 89.4 37 CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : AAGACCTCGCCAAGGGCAAGGTCACCGAGATGGGCAACAAGCACTACGTGCCCTACGGGCTCTACCGCGGCCACGGCTTCTACTCCGGCGCCCTCGGCACAAAAGCCGGCATCACCCCGGACGACCTGACCGCCTACTGGCACGCCATGACCATGATGTTCGACCACGACCGCGCCGCCTCCCGCGGCGAAATGGCCATCCGCGGCCTGTACGTCTTCACCCACGACGACGCCTACGGCCGAGCCCCCGCCCACAAACTCCTCGACCTCATCCGCATCAAACCACTGGGCCACAGCGAAGCACGCTCCTGGGACGACTACACCGACCGCATCACCATCGACGAAGACCACATCCCCGACGGAGTCACCCTCACCCGCCTCATCGACTGAGCCGACCCAGAGACACGGAACCCGGCTCAGGGCTACGCACCGTGCCGTCTCGAGCCACGGCTGAGGATCGCAACGAACTCGATCCCGGCCAGACAGCAAATGCCGTGGGCC # Right flank : TCTCGAACTTCAGCGACCGGACTCAGTGATCCCCGCGGCGAGCTGCCCCACGACGTCCAGCACACCCTGCCCGAACGCGGTCGGCGCAACGAGGATGCCAAAGACCAGGACGACCAGCACAGTCAGCTTCTCGTCGTTGCGGCTCCGCGCATGGGTACGCTAGCGCAGCCGCAGAACGATGATGACTACCAACAGCACCGCCACATTGATCGTGAGCACGAACAGCCCCGTCATCGATAAGCGGATGGCGTCTCACTCAGCCACACCCTCACGCTCCGCTGCGCCCATCTCGCGCTCCATGACCGTCGGCGTCGGCATGCTGCCCCTTCATCGCCGAAAAGTGCTACTCAAGACGGTCATCGCCGGTGCACTCGCTGGCGGGGGCTGCACAGCCTGATCGACCAACCGGCGGGGTTGGGCGAATCTCTCTGCCCGTCTCGCTGAGCGACGGGCGCCTTCCGTTCGGCAGTTTTGGCAACGCAGGATCGTTGCACATTACG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:-1.5, 6:0.25, 7:-0.06, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [82-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //