Array 1 822661-821292 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBQ01000002.1 Cronobacter turicensis strain SD21 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 822660 29 96.6 32 ...........................T. ATTTTATACGGACTTTTAACGGGGGCGATTGC 822599 29 96.6 32 ...........................T. CGGCGGGCGGCGTCGGTATCGCCCGCGGCGTC 822538 29 96.6 32 ...........................T. GAGCGCCAACAGGAGCGCATGTTTCAGTTGCA 822477 29 100.0 32 ............................. GTTAATGGTATGCCGTCCGAAATGTTCATCAA 822416 29 100.0 32 ............................. GGGATTCAGGCGCTTAAAAATATGGTTATCGG 822355 29 100.0 32 ............................. CGGCCTACGTCGTAAGTTTGCGTCCTGCCAGC 822294 29 100.0 32 ............................. ACGGCGGCACCACAATCGAAGCCGATCCGCTC 822233 29 100.0 32 ............................. GTTTTGCTGGCTGGCAAGACCTGTCAAGCGCC 822172 29 100.0 32 ............................. AAGTCGCAGCCAATCCAGTGCTATATAGAAAG 822111 29 100.0 32 ............................. TGACGACGCTGGGGTGTGTCGCCTGTTTCATT 822050 29 100.0 32 ............................. TTGATAAGGTCGAAATCGATGCTCTGCAGTTC 821989 29 100.0 32 ............................. ACGCCTGTTTTCGCCACCAGGTCAGCCACCGG 821928 29 100.0 32 ............................. CTGCATGGAGAGGGGTGAGATGGATATGACGC 821867 29 100.0 32 ............................. GCTGGTGATTTATGTACATCGACTATGTAGGC 821806 29 100.0 32 ............................. AGGGAGTCGTAGCATGATCACCGAACGTATAG 821745 29 100.0 32 ............................. GGTCCGCAACTTCCTTAAAACGTCGTCGTGCC 821684 29 100.0 32 ............................. TGAAATACAAGGTCATTACGCCGGCTTTTGAA 821623 29 96.6 33 .......A..................... TCGGCGCGCGGTTCGTCGGAGCGCTGTAGCAGC 821561 29 100.0 29 ............................. AACGGGAGCAGAGTGTCGCCGTGGATATG 821503 29 96.6 32 .............A............... ATTCTTGAGCGGCGGTGTTGACGTTCTGTGTG 821442 29 96.6 32 ............T................ ATATTCCTTTTTAATGAGGAGATTAAATGAAT 821381 29 96.6 32 .............C............... GTGATACCAGCTCTTTGTCTTCCAGTTGCCAG 821320 29 89.7 0 ....A........T..............T | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGGCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCAGACATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGACTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCAGAGGAGGGCAATGTGGTGATGGCCTGGGCCAACAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGACGGATTCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCTTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAACCAAACGTTGGTAAGATGTTGACTGCCAAAAAAGTGTAATAAATACAGTGGTGTAGTTTTAGA # Right flank : CATCCGTTGAGGCTTCTTTCTGCGCCACCAGCGTGTTCCCTGCTGCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTTAGTGCGCTTCGCTTACCCACCCTACCGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTTGCTTATCCACCCTACGGGCGCGCATTTTCATGCAGCTGTCTTACAAAACCTTCACTACGCCTGCTCCGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 852497-849649 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBQ01000002.1 Cronobacter turicensis strain SD21 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 852496 29 96.6 32 ............................T AGTTCACAAAATTAAATTTATCAAACGTAAAG 852435 29 100.0 32 ............................. TTTCTGGCGAGGAAAGTAACGTCCACTTCTAC 852374 29 100.0 32 ............................. CGGCGCAGGGGTGGGGCGCACTCGCCGAGGCC 852313 29 100.0 32 ............................. CAGGCCAGGCATTATTTACCACCCCAAAAAAC 852252 29 100.0 32 ............................. TGATTCACAACCGGCGCGGGCGGTGCGGGCGG 852191 29 96.6 32 ............................T GTCCTGGTGACTATTCCAGGATAGAGCCATGC 852130 29 100.0 32 ............................. CGTTAGCCCCATGTCCAGCACTTTCAGCGTGG 852069 29 100.0 32 ............................. CCCAATATTCAACAGCTCGGCTCTATCGGACT 852008 29 100.0 32 ............................. GTCCGTATCGTCCCGATCTCATTATTCTGGAC 851947 29 100.0 32 ............................. ATGTCGGGGTGTCAACGAAAGCTGGCGACTCA 851886 29 100.0 32 ............................. GAAACGTTGACCTGTTTTACGCAAGTGGTGAG 851825 29 100.0 32 ............................. CGGCGCGTCTGCGCGAGCTTGACCTGTTAAGT 851764 29 100.0 32 ............................. GTTGAGATCACCATTGACCACACAAACGCGCC 851703 29 96.6 33 ............................T GCGGTGGTGGGCGCCGAGGCCACACTACGCAGC 851641 29 100.0 32 ............................. CAAATAGGCGGTTCTGCGATATGAGTCGGCCA 851580 29 100.0 32 ............................. AACGTGGGGTTTGTGCGGGCGAGATCAAGCGC 851519 29 100.0 32 ............................. CTCATCAACGTTCGCGGTGACAGTATGGAAGG 851458 29 100.0 32 ............................. GCACCGCCAAATTATAGCTATTCTCTGGTCTT 851397 29 100.0 32 ............................. GCCGGTATCGGAGATGACAACGATTTTGTCGT 851336 29 100.0 33 ............................. GCTCGTTTGTGGTGGACTGCGCTACGTCCGGGG 851274 29 100.0 33 ............................. GCTCGTTTGTGGTGGACTGCGCTACGTCCGGGG 851212 29 100.0 33 ............................. GCTCGTTTGTGGTGGACTGCGCTACGTCCGGGG 851150 29 100.0 32 ............................. GCTACGGTTCAGGATTTTTCAGACGGCTTTTC 851089 29 100.0 32 ............................. GCCGCCGAATTACGAGTTATTGAGGGCATTCA 851028 29 96.6 32 ............................T GGCGATTAGTCTGTTTGAGTAGTGGTTCGGGA 850967 29 100.0 32 ............................. CTGGCGCGGGGTGCCGTTTCAGGTTTCCGAAG 850906 29 100.0 32 ............................. GTAGTGAGTTAACGAAGGTGCATACCAAAGTA 850845 29 100.0 32 ............................. ACAGGTATCGTGTTGAGCAGAGCCGACGCCGA 850784 29 100.0 32 ............................. TCAGCGGCGGGAGAGATTGACCCGGTTCAGAA 850723 29 100.0 32 ............................. TTTACCAATGAGGTAATCATGAACCGATTTTG 850662 29 100.0 32 ............................. CAGACCTATTTCCGCCCTATCGTCATCAACGG 850601 29 100.0 32 ............................. GATCGAACTGAGCAATCGAGGTGGCAATCTGG 850540 29 100.0 32 ............................. TCGCCGTCTGGCGAAAGGTGAAGCATGTGCCC 850479 29 100.0 32 ............................. GGTTGTCAGGTACAGTTCTTCCATATGCTGGC 850418 29 100.0 32 ............................. AGTGAAGTCATCGATATCTGGAACTACCTTGC 850357 29 100.0 32 ............................. GCAGCCAGTCGTCACCAATTTTCAGCTCACAG 850296 29 100.0 32 ............................. CGCTTCTCTGCCGCTTCCAGTGCTGCTATCAG 850235 29 100.0 32 ............................. GCATCTGGCGTCACTCTCACGCGGGTAAAGAG 850174 29 96.6 32 ....................C........ CCACCGCGGTAATCCGGGCAATAGCGATCGGC 850113 29 96.6 32 ..................T.......... CAGTTGGCGGAGAGGATAAAAGTCAGCATTTG 850052 29 96.6 32 ............................T TATACAGTCCAGAATTGGCCGCAAAAAATTGT 849991 29 100.0 32 ............................. GTAACAGGGATATTAATTATCGGGCGATTAAC 849930 29 100.0 32 ............................. CCCTCCGGAGAGGGCGAACAACTTCAGGGGGG 849869 29 93.1 41 ............T....C........... CAGGCGCTAAAATCACCACGTTTAGCCAGGTGGCGACGGCG 849799 29 96.6 32 ............T................ TTCTTAATATTCAGCATAATTAACCCGCAATT 849738 29 100.0 32 ............................. AACAGTCAGGCCTGGGGCATCGTATCTGTGCA 849677 29 93.1 0 .......................C....T | ========== ====== ====== ====== ============================= ========================================= ================== 47 29 99.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCCGTGCTCGGCGATCTGCTGACCGTCACAAGTCAGGTAAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACCCAGAAAGCGCTGCCGATCGAAGGCGAACTGCGTAAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGACTGTGCCCGCCATCATGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTTTGTGGCGATGAAAGTTCATTAATTTCAGTAGGTTATATTTAGT # Right flank : TATAAATACGACCTGGAAAAATAATAACCGCGTAGCATGTTCATTTAACAAACGGACAATAAAAAGCCCGCTATCGCGGGCCTTCACTTTTAATAGTATCCACCGCCGCCCGGACGGGAGTCAGATGATCTCCCACCACAACGCGTGCCGTCAGCAGCCCTGTCGTCGTCGTGATTACAGGCAGCGTATGATTGCGTAGCAGAGCCGAAAGAAAGCAAGACGAAGAGAAACGCGAATACCTTTTTCATTTTTTATTCCATAAAGTGCCATCACATAATGGCCGTCTCATTGTATGAGGCGGATTATTAAATTCGATGGGGAAGGTCACAATGCAGACGGAGATAAAAAAATAAGATTTCGCCATGTTCTGGAATACACCTCCCACAAATAATCTTAAGCCTGGCTATTACTCCAGCCCCATATCCCGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTAAATTCTCAAGACTGCGCAACAAAGGAGAGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //