Array 1 1590561-1591259 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHZ01000021.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03285 2015LSAL03285_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1590561 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1590622 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1590683 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1590744 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1590805 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1590866 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1590927 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1590988 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1591049 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1591110 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1591171 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1591232 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1607900-1609760 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHZ01000021.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03285 2015LSAL03285_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1607900 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1607961 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1608023 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1608084 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1608145 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1608206 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1608267 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1608328 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1608389 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1608450 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1608511 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1608572 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1608633 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1608694 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1608755 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1608816 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1608877 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1608938 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1608999 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1609060 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1609121 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1609182 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1609243 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1609304 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1609365 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1609426 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1609487 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1609548 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1609609 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1609670 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1609731 29 93.1 0 A...........T................ | A [1609757] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //