Array 1 2748-3455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTM01000015.1 Bifidobacterium longum strain AF27-1BH AF27-1BH.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2748 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 2809 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 2870 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 2931 29 100.0 32 ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 2992 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 3060 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 3121 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 3182 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 3243 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 3304 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 3365 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 3425 29 82.8 0 ............C......T....CG..C | AC [3447] ========== ====== ====== ====== ============================= ======================================= ================== 12 29 98.3 33 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CGGGAGAGCAATCCTCCCTCCCGGCGTACTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTCGCGATGCTCCTCCATGACATGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAAACCGAACGGTTTGACTTTCAACTCGGGAAACTAGTCCAGGCAGGACGGGCCGGTGTTCGTTTCTCACCACACGCTGAAGTGGACCAGAACCTGCCGCTCACATGGAAGACATCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACACTCGAAGACGCGCACCCCGGCCTGCAGGCGCATGGAACGCCATTTCGGTCCGGCCGGATACCGGTTCGCGTCGATCGCGGCGGCGCCGGTCTTGTCGGTTTTCACGCTCCTCCAGTCGCACGGGTGTTTTGCTTCAATGTTTGTTCGACAGGTTCGGCAGTGTTTTTCCGTAGTGTGGNNNNNNNNNNG # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4972-5546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTM01000015.1 Bifidobacterium longum strain AF27-1BH AF27-1BH.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4972 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 5033 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 5094 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 5155 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 5216 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 5277 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 5397 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 5457 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 5518 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATGACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6042-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTM01000010.1 Bifidobacterium longum strain AF27-1BH AF27-1BH.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 6041 29 100.0 32 ............................. TCCACGTTGTCGATGACACCGGTCATGCAGGC 5980 29 96.6 32 ............................T GCGGGAAATCGCAGCTGGTACGCGGTGTGCAC 5919 29 100.0 32 ............................. GACCGGCCATGAAGCCACGCTGCATCCTGTGC 5858 29 100.0 32 ............................. TGCTCTCGTAGCCGACGCACGTGCTCTCACGC 5797 29 100.0 32 ............................. TGGTTTTCGGTTTGCTTTACCCATGTTTTAAA 5736 29 100.0 32 ............................. TCCATTGGAGGACGCCAGCTTTCGGGCAGGGT 5675 29 100.0 32 ............................. ACCACGGGAGGCAACGGCACCCCCAACTGGGA 5614 29 100.0 32 ............................. TCGCCGTTGACGAGCTCCCTTGGATACGTCGT 5553 29 100.0 32 ............................. ACTCCGGACCCCTGCAAATCTACTGACCGTTT 5492 29 100.0 32 ............................. GTCGGGGTCGGCGGCATGTTTGATGGTGCCGT 5431 29 100.0 32 ............................. GTGACACCATCGCCCATGTCGTTCGCGGCCAC 5370 29 100.0 32 ............................. AAGGCGAACGCGAAGCTGACGGAAGCGCAGTC 5309 29 100.0 32 ............................. GCGAACACGGCAGTCGCCGCCGCACAGGCGAA 5248 29 96.6 32 ............................T GTTACAGTGCGACAAAACGTCTCCCAGTCGCC 5187 29 100.0 32 ............................. TAGTCGTAGATGGCGCGTGTCGCACAGCTGAC 5126 29 100.0 32 ............................. AGCAGTAGTAAAAAACACAGGGCAAAACACAG 5065 29 100.0 32 ............................. GGCAGGGCACGCCAAGCGTGGGCGACGGAGAA 5004 29 100.0 32 ............................. GGAGAAGCCTCAGATGAGTCTTGATTATCTCG 4943 29 100.0 32 ............................. AAACCGGTCAAGCTGCCCAAGATCACGGTGGA 4882 29 100.0 32 ............................. TACTATATATAATTACCAAAAAACAGCCGAAA 4821 29 100.0 32 ............................. TCCCAGCACTGTGCGCCATAGCTACCGTCCAT 4760 29 100.0 32 ............................. GGCAGGGTACGCCAAGCGTGGGCGACGGAGAA 4699 29 100.0 32 ............................. TCGGGAACGGCCATCAACCCGATTGATAATAG 4638 29 100.0 32 ............................. CATGTACTCCACGGTGACGGTCTGGCCGCCGT 4577 29 100.0 32 ............................. AAGTAGGCAAAATAGAAAGCAGCAGAGATGAT 4516 29 100.0 32 ............................. GACACGAAGATGCCGAACTATCGCAAGCATTG 4455 29 100.0 32 ............................. GCGTTGACATCGCGGCTGGGGAAGCCGCTGAC 4394 29 100.0 32 ............................. AACGCGTCGTTGAACTTGATGCTGGTCTGTCC 4333 29 100.0 32 ............................. CTGCCGCCGAACGATTTGCCGATTTTCGAACC 4272 29 100.0 32 ............................. GAACCCTTTTTAATCATTCGACCGATGGAGGT 4211 29 100.0 32 ............................. GAAGGTGTCATAATGTCCAGTATCAACAAAAC 4150 29 100.0 32 ............................. TTCTTCACGTAGGGCGGCCATCTGTCTGAGCA 4089 29 100.0 32 ............................. CACCGTTTGCAAGGAGTCCTGTCTGCCGTATA 4028 29 100.0 32 ............................. TACGAGGCCGACCACATGTTTCAGGCGAAGGC 3967 29 100.0 32 ............................. CGTATAGGCCGGTTCCTCGCAACACAGGCAGG 3906 29 100.0 32 ............................. ACCACAGCGGACAATGCGCTCTCATTGGCGCA 3845 29 100.0 32 ............................. CTTTTTGACGTGGTGGTGCTGGAATTGTCCGA 3784 29 100.0 32 ............................. CAACAGAGATGATACACAATGACAGAACAGGA 3723 29 96.6 32 ............................T GGTTTTGGATAGTTCCGCCACGGTCGCTTCCA 3662 29 100.0 32 ............................. TCATCATTACAACACACCTCCGATGCCCGCGT 3601 29 100.0 32 ............................. GTTCGCCACGCTTCCACCCAGTCGGAGGCGGA 3540 29 100.0 32 ............................. GATGCCTGAGCATCGAGAACACCGCGTCATCG 3479 29 100.0 32 ............................. GGGGCGACATTGACGTGTTGACCCAAAACCCA 3418 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 3357 29 100.0 32 ............................. GTATGTCACAACGGCGGCAGCAACACCGCAAC 3296 29 100.0 32 ............................. TTATGGCACCCAGTGCTGGGACTTGTGGGCGA 3235 29 100.0 32 ............................. ATTATATCATCGGATACGATTCATTGGACCCC 3174 29 96.6 32 ...C......................... GACGCTGTCCGCTAGATCGGGGCTTCCGGTCT 3113 29 100.0 32 ............................. GAACCGACGAAGAATTCACCGAACGCTATCGT 3052 29 100.0 32 ............................. GGTGATTATGCGTTCCGCAGTTTCGACAAGAC 2991 29 100.0 32 ............................. TGGCGAAGATGTGGGGCAACGCCTTCTGCTCC 2930 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 2869 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 2808 29 100.0 32 ............................. AACAATGGTTCGACAAACTGGATGGAGTGGAA 2747 29 96.6 32 ............................T GACCGGAATGTCAATCAGGAACTTGTCAGTAG 2686 29 100.0 32 ............................. TGCCCACGGATGTTGAACGTGCCCCATACACC 2625 29 100.0 32 ............................. CAAATGATGATAAAACTTTTACAGTATCAGGA 2564 29 100.0 32 ............................. CGGACAACTGACCGATGCTCCGAAGCCGCCCC 2503 29 100.0 32 ............................. TGCTGACGCTGATTAACTCCACTTACGGTACC 2442 29 100.0 32 ............................. ACTGTCGGTATCACCGCCCGTGACGGTAACGC 2381 29 100.0 32 ............................. GACGTGATGAAGGCGCTCGTGGCCCTCAAGGA 2320 29 100.0 35 ............................. AAAAAAGAACCGCCGAAACCCTCAACAAGCTGCAG 2256 29 100.0 32 ............................. CCAGTGGGCGGGCATTCGATGGACGTTCCCCT 2195 29 100.0 32 ............................. CGGGCGGCAAGCACGCACGAATAGGCGTTCAG 2134 29 100.0 32 ............................. CACAGGCTTGCCACGATGTCGCTTATGAAGTC 2073 29 100.0 32 ............................. CAACCGAAGGCATCGGATACGTCAACCCCGAT 2012 29 100.0 32 ............................. CACTACACGCCGGGCCGCGCCGGCCACCGCAT 1951 29 100.0 32 ............................. ATCGCGTGCCATCTGCGACAGTTGGCACCGCC 1890 29 100.0 32 ............................. CTCTGCAAAATGTTCGATGGACGTAAGGCGCT 1829 29 100.0 32 ............................. AGGGAAGTTGTAGCGGCTTGTAGTAGGCGAGA 1768 29 100.0 32 ............................. TACGCCAATTGCCTGACCATCGCGCAACGTCT 1707 29 100.0 32 ............................. CGGTTTCAACGTGTTTTCTATAAACGCGCGTT 1646 29 100.0 32 ............................. CTCGCCCATAACGACGGCACCGTTCGCACCGG 1585 29 100.0 32 ............................. GTTGCCGATGGCGTCCACAGCCATACCGATAC 1524 29 96.6 32 ............................A CCTATGGTCGATCAGATCACCCAAATGCTTGA 1463 29 100.0 32 ............................. GGCACGACCATAGCGTCTATGGCGATGACCGA 1402 29 100.0 32 ............................. TCAAGTCGGCGCTTGACGTGCAGGGCCTCGCC 1341 29 100.0 32 ............................. GTGTTCATCCACCTTATCGGCGGTCTGCATGG 1280 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 1219 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 1158 29 100.0 32 ............................. TTCGCAATGGTCATGACGTCTTCGTAGCGTAA 1097 29 100.0 32 ............................. GCGGCTATGGGTATCGCCGGCATCGGCGGTAA 1036 29 100.0 32 ............................. GTGCGAACCATTGTTTTTGATGAGATTTTTCC 975 29 100.0 32 ............................. TGGCCACGGATGTTGAACACGCCCCACACACC 914 29 100.0 32 ............................. ACCATCGCGCCGAGTTGAACGAGAAAATCGTC 853 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 792 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 731 29 100.0 32 ............................. GAAAACCCTCTCGAAATCTAGTTGTTCCCGTT 670 29 100.0 32 ............................. CGTCCTCCTTTCCATTTCTCTGGTGGGATTGG 609 29 100.0 32 ............................. AGCAAGGATTCCGACAGGGACTGACCCGACCC 548 29 100.0 32 ............................. ATCAGCCGGATCATCGAGAACGCGCCCGAGGA 487 29 100.0 32 ............................. ACGACCGTCTGGTGGCATCACGCGCTGGTGCG 426 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 365 29 100.0 32 ............................. ACCATCAACATACATGCGGACGGGACCATGAC 304 29 100.0 32 ............................. CATGCGAGCTGCGCTTCGCCGGCACGCTGTTG 243 29 100.0 32 ............................. CCGGCGCGCCCGAAGCCGACGCGACCGGACTG 182 29 100.0 32 ............................. GCTGGGTCGCGGGCCGCAACATGGACTGGGGC 121 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 98 29 99.8 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : GCGTTGCCGTCCAAGCCCCAGCGACTTCCGCTGGTTTGCCTGTGTTTTGTCAAGTTGGAGTAGGCCGTTTCGGCGTTTCTTTTAGTCCATGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //