Array 1 8517-7391 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQI01000030.1 Salmonella enterica subsp. enterica serovar Braenderup strain 110 NODE_30_length_13947_cov_14.7505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8516 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 8455 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 8394 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 8333 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 8272 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 8211 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 8150 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 8089 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 8028 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 7967 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 7906 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 7845 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 7784 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 7723 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 7662 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 7601 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 7540 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7479 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7418 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 252120-250196 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQI01000008.1 Salmonella enterica subsp. enterica serovar Braenderup strain 110 NODE_8_length_260973_cov_15.9739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 252119 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 252058 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 251997 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 251936 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 251874 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 251813 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 251752 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 251691 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 251630 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 251569 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 251508 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 251447 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 251386 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 251325 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 251264 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 251203 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 251141 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 251080 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 251018 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 250957 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 250896 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 250835 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 250774 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 250713 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 250652 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 250591 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250530 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 250469 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 250408 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 250347 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 250286 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 250225 29 89.7 0 A...........TC............... | A [250198] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //