Array 1 46720-49488 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRDB01000006.1 Aggregatibacter aphrophilus strain HK_319 NODE_6_length_152270_cov_56.6304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46720 32 100.0 35 ................................ ATCAATACAACCGGAACGTTTAATCATCGCTCGTC 46787 32 100.0 33 ................................ TGCACGAGAAAAAGGCTTAAATAGCGTTTATTC 46852 32 100.0 35 ................................ TAGAGCTGAAGCAAGGCAAATGCCACAGTCTGAAG 46919 32 100.0 36 ................................ TTTAGCCTTGAGATGGGCAATATGCAGTTGCTAGAC 46987 32 100.0 36 ................................ ATTTTCACCAAAACTTAGCCCCTCGTATTGAGGGGG 47055 32 100.0 36 ................................ AAATCTAGTTCTGAGGTTGGTATAAAAAATCTCGGG 47123 32 100.0 35 ................................ GCTCAATGGATGAAAAATTCGTTAAGGAACAAGAA 47190 32 100.0 35 ................................ TTTGTCTATGTATTTCATTTTTTTGCCTCTTAAGA 47257 32 100.0 36 ................................ CGCGATTAACATCGAATCTTACTTGGCTGATCGTAT 47325 32 100.0 33 ................................ ACTAACTGCTCACCATTGGGCGATCAATGTGTT 47390 32 100.0 35 ................................ AAGGAGAAAGGCGGTAAATCCAGCGCGTACAATCC 47457 32 100.0 35 ................................ ACGCCAACCACTGGCAAAGCGGATGATGTAGGCTA 47524 32 100.0 34 ................................ ACGGCGGTTTGCTCCCGCAACCACTGCCGCGTAA 47590 32 100.0 34 ................................ TATCCATTTGCGCTATCAACTCTTGATAATAATC 47656 32 100.0 34 ................................ GCGCTCTTGTTGCAACGCCACGTTTAAGGCTTGA 47722 32 100.0 34 ................................ GTTGGGCCACTGCTCGCATGGTTGGTTCCCTCTG 47788 32 100.0 35 ................................ TGTTAAGGATTACAAAATTAGCGGTAATGAAGAAA 47855 32 100.0 35 ................................ TTGCCGGTAATTTGGATAAGCCCGCGTCCACGATA 47922 32 100.0 35 ................................ AACGAAGCTATCCAAGACGGGCTTTATCGCCGCAT 47989 32 100.0 35 ................................ GTTAATCCACTTATTGAGATTGTCTACTTGGCTTG 48056 32 100.0 35 ................................ CATTGCTCCATTGATAATTTCCGCCCCATAAATTC 48123 32 100.0 35 ................................ GCGGCAAATAGCAAGGCTTGGAGCCATCACTAATT 48190 32 100.0 34 ................................ CATAACTACTGGTGAAGCAAACTTCCAGGTCTGG 48256 32 100.0 35 ................................ CATAACGCAAGAAATTTGGTCGTAAGCCGCGCGGC 48323 32 100.0 33 ................................ TGTGTCATGCAAACAATCCCGAATTTGAAAAAA 48388 32 100.0 35 ................................ CCGGCTGGCGCAATCTTGATTACCCGCTTGGATAA 48455 32 100.0 34 ................................ CGTCGTAAGCTGACGGCGGCCAGTGAAACACTGT 48521 32 100.0 33 ................................ CTCGCTCCAAGTGTCATCCCATTTATCCACCGA 48586 32 100.0 35 ................................ ACATCACCAGTAAAGCGTTTTTGCACTCGATAAAG 48653 32 100.0 36 ................................ ATAGTTGTAACGGTTATAACGTACTAACGCCCGCAA 48721 32 100.0 35 ................................ CGAAAGTGCCGACAAAGAAGAATTATTGGAAAAAA 48788 32 100.0 33 ................................ AGCAGTTCGGCGTTGATCTTGGTTACGCGTTGG 48853 32 100.0 35 ................................ CAATCACTTGATTTTGATATGCTTGAGGCTGACTT 48920 32 100.0 35 ................................ ACGCTGTTTACCGTCTGGCTTACCGCCTTTCCAGT 48987 32 100.0 34 ................................ AGGAGAAAAGACCATGGCTCAACTTAACTTTAAC 49053 32 100.0 35 ................................ GATGAATGCCTTGTTATTAAACCAGGTGCTCCAAG 49120 32 100.0 35 ................................ TAATGCCCGATAGCGGGCGGGCTATTGCTATTTCC 49187 32 100.0 35 ................................ CCCAAATTCGGTCGAGCCAGATTCTAAGCTGCGGT 49254 32 100.0 36 ................................ CTCAATACTTTCGCTTCCCGTTCTATCGCGGTTGCC 49322 32 100.0 35 ................................ GCCGAGGCGGTGAATGCCGGACGTTACAAAAAACG 49389 32 100.0 36 ................................ CAACTAGTGAAGAAGTTAAAGATTTGGCTAATTTAA 49457 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 42 32 100.0 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAGCCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGCGCGCAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGTTGGATACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTGTTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACTCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGGTAGGGA # Right flank : CAAGATGTCGAGCAAGTCGTGCTCATTTTGTGCGGTGGCAACCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCCTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACAGCTCTTTTTGTTGACCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCTGTGCCTTTAACAATGAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCACCCACCAGCTCAGGATTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGTCCACCCAGTAAATTTACGATTTGCACTACTTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //