Array 1 882282-882468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016502.1 Acetivibrio thermocellus DSM 2360 strain LQRI chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 882282 37 100.0 38 ..................................... CCAAAATCAGGCCGTGCATGGGTGAACCAGGAAGCAAA 882357 37 97.3 38 ...............T..................... ATACATAACAGAATTCGCCTCCCAATTTATCATTATAG 882432 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 98.2 38 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCAAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCATTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCCCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACCA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 985163-979773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016502.1 Acetivibrio thermocellus DSM 2360 strain LQRI chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 985162 30 100.0 37 .............................. TCTTCATCATCGGATATCTTTCTTTCCATTTTTGGAC 985095 30 100.0 37 .............................. TTTGTTATAGAGAGTCATTTAATCAATATTGAATTAG 985028 30 100.0 36 .............................. TGACAGCCCAAACGAAAAACCCAATTGCTACATTCA 984962 30 100.0 36 .............................. TTTTGAAGATAATTTTGGAGAACGGGCTGCAAGAGA 984896 30 100.0 36 .............................. TTTCATTTAGAACTTGATTCGTCATATCATCTCTGA 984830 30 100.0 37 .............................. CCAAGAAAAGCGGCGACAAGATTACTTCGATTAAACC 984763 30 100.0 38 .............................. ATTTTTTCAAGGATGTATTCGATGTCTTCATCTCTTCC 984695 30 100.0 37 .............................. TAGCTTCGCATGAAGTTTGATTGTATCACGCTATTGA 984628 30 100.0 37 .............................. ATATATCTACTTTCTGAAAACCTCCTCACAAAACAAC 984561 30 100.0 37 .............................. TAAGAACTAGTCTATCAGAAATATCACCATTTAAAGA 984494 30 100.0 36 .............................. CAGATGGGATGAATAAGGTCTTTAAATCCTCTTTTA 984428 30 100.0 36 .............................. CAATATATATCAGCATTTTCCAAAATCCAATCCATT 984362 30 100.0 38 .............................. TCTTGATGACTATTTTGGATGGTTTGATCCCGTTGCTT 984294 30 100.0 36 .............................. CACTTTTTGAAAGTATAAATGAGGAGGTATTGAAAG 984228 30 100.0 38 .............................. ATCAGTCTAATACTGGACGTAAATATATAGGTGCTATC 984160 30 100.0 37 .............................. GTATCAACAGTAAATTCCCCATCATACACCTTATTGG 984093 30 100.0 38 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAAG 984025 30 100.0 36 .............................. AAATTACTATTGACAGTATAAAAATATATGATACAA 983959 30 100.0 36 .............................. ACTATTACAAAGGCAAAATTGCTTAGAAATGAGGAG 983893 30 100.0 36 .............................. GCATTTGAACATATCATGACCTTCCCCGAGGCAGAA 983827 30 100.0 40 .............................. TCCCTGATTTCAATTCTGCCGATAAGTTCAAATCCAGCCC 983757 30 100.0 38 .............................. ACTCTTCTTCCATCCGAATAGGTAATACAGTCAATTCG 983689 30 100.0 38 .............................. TTTGTCAGTCTGATTTTGATGTTCAAACTGTATTCCCC 983621 30 100.0 36 .............................. CACACGCTTTCCAATCCTTGATTGGTTTTCTTGCCT 983555 30 100.0 38 .............................. CGCTGATATGTGCTGCGACGGCTCATATGTATATGCAG 983487 30 100.0 37 .............................. TTTTGACTGGTCCAGGTTCCACCCATATTATCACTCC 983420 30 100.0 36 .............................. TACCTGATTTTGCAGTATGCGGTAGTCACTATTTCG 983354 30 100.0 36 .............................. TAGTGTCAATGTTCTTCCAAACTTCTTCAGGGAGGT 983288 30 100.0 36 .............................. AGTATTTCCTGCAAGGCTTCTTCTGCATCTACTATA 983222 30 100.0 36 .............................. TAAGCATCATGATGGATAAGGTCGGTACCTTCCCGA 983156 30 100.0 38 .............................. AAGCAGTTTGCCAAATCCTATCACTAAGTTGAGTCACA 983088 30 100.0 36 .............................. TGCTAATTAGCTCGTTGCCGCATAGCGCAATTATCA 983022 30 100.0 38 .............................. TATGTTCACATGGGATACATCGGTATATCCGTGGGTTC 982954 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGAACTTGGAGATAC 982887 30 100.0 36 .............................. TTTCTTTTTCTTGCCATATCCTGGCAATTTCTATAC 982821 30 100.0 41 .............................. ACAAATAATTTTACTATGCGCCAAGTAATTGGATATATCGC 982750 30 100.0 36 .............................. ACCTCCCGGACAAAAACTTATCCGGCGACGGGCCGA 982684 30 100.0 38 .............................. TGGTGTCAGAACATCCCGGGAATTCGGTTTGAAGATTC 982616 30 100.0 37 .............................. TGGCGCCTTGGGCGCCTGTAACCATAATTTCGCAGGA 982549 30 100.0 36 .............................. TCCACCACTGTCCAGAGTAAAAAAAAGTAGAACAGA 982483 30 100.0 36 .............................. CGGCAATCTTCTGTCGCAGTTGGCTGTTACGCGGAA 982417 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 982349 30 100.0 36 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAA 982283 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 982215 30 100.0 38 .............................. GCATTGGACTGATTCTGCATATCGCTATCAACTCCTTT 982147 30 100.0 37 .............................. AATTGTGGGATAGCACCGGCCTGATCAACCGGTGCGA 982080 30 100.0 37 .............................. GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 982013 30 100.0 37 .............................. GCTTTTAGCTTACTTTCTAATACGTAGCCATAATTCC 981946 30 100.0 36 .............................. TTCCGCCGTTGCCTCGCTTCCGTCCGGAGCTGGCGG 981880 30 100.0 36 .............................. CCGCCCCCGGAATGGGCTTGGGTGTGTCATAAGTAA 981814 30 100.0 38 .............................. ATTCCAGCGATTCGGCCATCGATATGAGCGCCAGGTTG 981746 30 100.0 37 .............................. GGCTTTCCTGCCAAAGTTGTTCCTGCTTCTGCGAAGC 981679 30 100.0 37 .............................. CCACCTGCAGAGTTAGAACCATTTATACGCAGAAAGG 981612 30 100.0 37 .............................. TATTCTGACACATCAATTTGCTTGAGTTCAGTGATTT 981545 30 100.0 37 .............................. TCAACGAGAACGATGTCATCAACAATGTGCGGGCCAG 981478 30 100.0 36 .............................. GCAGTTTCTGATACGTTTCATTGCTGGTCCGAACCG 981412 30 100.0 37 .............................. TTTCAAACCTTACAACTTGTTGCATAACAAATTCTCC 981345 30 100.0 38 .............................. TCTATCGATGCGAGTTCTTCATGCCGTAGTTCCAATGA 981277 30 100.0 36 .............................. AAACAAATTGCAATTATAAAAAAATAGGGAATCACA 981211 30 100.0 35 .............................. TGCGATCAAGTACACTGTTAAGACTATCAGGCTTC 981146 30 100.0 36 .............................. AAATAAATTTGTCGCTGCCTGAGCCAATTTCAACAC 981080 30 100.0 38 .............................. AAGATTTCATTTTTGCAATACCTTATGAAACATTTGGT 981012 30 100.0 36 .............................. ATCTAACAGTCCAGCTGCCTTGAGGTCGCTTATTTT 980946 30 100.0 38 .............................. GGGACGTCAACACTCCGAAAGGCGGCTAGAAGTGGACG 980878 30 100.0 36 .............................. GCCATATATACACCCCCTACAAGTAGCTTGGAGCAA 980812 30 100.0 35 .............................. AGCTTGTCCGCAGGCTTTTCTTCCTTGGGCTCTTC 980747 30 100.0 36 .............................. CATTTCCATCAACCTTAATAAGCACGTCTTCAGGTA 980681 30 100.0 35 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGAGCCATT 980616 30 100.0 37 .............................. CCCAAAACATATTCATCCAAGTTATTCGTGCAGTTTA 980549 30 100.0 36 .............................. GCTGTAGTTACTTCTGTCCCGTTTTCTCTAATACTA 980483 30 100.0 38 .............................. CCGTTTTCATCCTTGAACCTATCAGATACTACAAACTC 980415 30 100.0 37 .............................. AATCCAATAGTAGTGCTAATAGTTCCCCATCCTCCGT 980348 30 100.0 39 .............................. ACATACAAAGGTATATCCCATCTTTTTCACTGTTTCAAA 980279 30 100.0 36 .............................. CAGACGACAGCTTTTTACCTATCCTTTATGAGCTGG 980213 30 100.0 43 .............................. TCGTACTGTAGACGGTGAAATACAAATCATTCCTGAGTTTTTA 980140 30 100.0 36 .............................. CGCAGTAGTCTGCTGTCAGTTCTATCCCTGCTGCGG 980074 30 100.0 37 .............................. ATTTATAAAGGAGAGATTATGTGGCAAAGATAACAGA 980007 30 100.0 41 .............................. TGACAAAGTAAAAGCAATAGCTGATGAGCGTAACTTAACTA 979936 30 100.0 37 .............................. GTGAGTACTTGTGAACAATCACGAGTTTCTCAGGTGT 979869 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 979802 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : ACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1920788-1918880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016502.1 Acetivibrio thermocellus DSM 2360 strain LQRI chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 1920787 30 100.0 38 .............................. GATAAAAAATGTTGGTGGTCTTTGATGGCCACCAAGTG 1920719 30 100.0 36 .............................. TAAATTACTGCAATATCTCTGATATACCTGAAGCTC 1920653 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 1920584 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 1920518 30 96.7 36 .............................A TTCTTCCCCCTTCCTGCTCAGCACTTCAATAGCTTC 1920452 30 96.7 37 .............................A GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 1920385 30 96.7 37 .............................A TCCTATTCATAGGTACTGGGAAACCCAGCATGTTTGT 1920318 30 96.7 37 .............................A TTGGTGTTTCCGAGGTCTGCAATTGCGCCAGCAACAG 1920251 30 100.0 40 .............................. TTAAACAAGCTGCCATTGAAGCGGTTGCTGCTTCCAATCC 1920181 30 100.0 36 .............................. AACTTGAAAACATTGGCATTGGAATCAGTGAAATAA 1920115 30 100.0 40 .............................. TATTTTCAGCTTCTTGCTCTGTGTTATACTTACCAAGCCA 1920045 30 96.7 36 ....................A......... GGTTCTAATACATGCATAATCGAAATGTTCGAAGGG 1919979 30 100.0 36 .............................. ACTGCAAGATATGGCTTTCCGTCAACTTCATAATGA 1919913 30 100.0 38 .............................. AAAGCAAAAGCGATTGCAGCTCTTGAAAAAGCAAAAGG 1919845 30 100.0 37 .............................. CGATTGACAGCAGAGAAATAGCAGACATGTTGGAAAT 1919778 30 100.0 37 .............................. TGCGCAAACCGTTTTCCACACAAAAAACCGTTCCGTG 1919711 30 100.0 39 .............................. TCTTTGTTAATCTCTACTCTTCTCAAATCACCGTTCCAG 1919642 30 100.0 37 .............................. CTATTTTTTCATTGGATTGATTCCACAGCCATTCTTC 1919575 30 100.0 35 .............................. TTTGTGTTTTACTCTGGCTTGGTATTCACGGAGTA 1919510 30 100.0 37 .............................. GGGTCGAAGGGCTCATAGTTGCCTTGGAAACCTATGC 1919443 30 100.0 37 .............................. ACAGCAGGATTAAAGAAACATTTATTTTCGTGTTCTC 1919376 30 100.0 37 .............................. TTTCATTCCATCAACATATAAAGATGAAAGCGGTAAA 1919309 30 100.0 36 .............................. TAGAGTATTCCAAACTGCAGAAGTGGGAGGATACAA 1919243 30 100.0 38 .............................. TTTCTCTCTTTTCTGGCAGGTAATCCACTTGGAATATG 1919175 30 100.0 36 .............................. GAGGATTTTTTGAAAATTGGGAGAGTCGCAGGAGAA 1919109 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 1919040 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [1919015] 1918909 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 28 30 98.1 40 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTCTGCCATGTTATCACCCT # Right flank : AGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATGTCAATACGCTTTTTGAATTTACGACAAATTGTACAATTTACTTCTTAAATTCTATTCTCTGTATCATTCCGTTATAAAAACTAAATGTAAAAGATTAAAAATCAAAATTAAATTTGATTATTATGCATCTTATGGTAATATACTTATGTAACTTTAAGTTGTTAATTGGAAAATAAACTATGTTCGTTACGTTACTAATTTGAAAGGTTTGGTTTGATTCCAAGCTGTGCAAAATGAGATGTTTTGCACATGGTTAAAGGATGTGAGGAAATGTAGGAACGATATGCAAAATTATACAGTATTCTGACATTATCAAAAAATTAAAAAAGATTGCAAAAAAATAGTTTACCTAAAATTGATTATGCTGAAAAGAGGGAGGATTAAAATGAAAAAAAATATTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1937364-1934120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016502.1 Acetivibrio thermocellus DSM 2360 strain LQRI chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1937363 30 100.0 36 .............................. TTCTTCAGGAAGTGAGTAAGGGTAATAAGGGGGATA 1937297 30 100.0 37 .............................. TGCTCAGAATATGGCTAGGCATTTACACGTTTGATGG 1937230 30 100.0 36 .............................. TGTTGGATGCCATACGGAGAGGCGCATTGGATTTTG 1937164 30 100.0 37 .............................. ATAATGACATTTATGGTACTGTTGTGGTAATAGACGA 1937097 30 100.0 38 .............................. TAGTGCATCTTTGGAAGACGAATGAAGAATTCAGAGAA 1937029 30 100.0 37 .............................. AACCTCTGTTTTTCGTCGTCCCAGTATTCCTTCCTTG 1936962 30 100.0 36 .............................. GGATAAACATTCAGAACTACTCTTTCAAAATACTCA 1936896 30 100.0 36 .............................. TTAAACCCACTTTTTTGAATTTATGATTATGTATTA 1936830 30 100.0 37 .............................. TCGCCTCTTTGGTATTTCGGGCGTAAACTGCAAAGAC 1936763 30 100.0 37 .............................. ATATTTAGGCTATACTCACCGGCATTCAGTTCCATTA 1936696 30 100.0 39 .............................. CTGGTATTCAATGTTCTTGCAAAATTGTTCCATTCAGAA 1936627 30 100.0 38 .............................. CCGATGACTCTCTTTGGTTGCTTGACGATAGTCAGAAA 1936559 30 100.0 37 .............................. TCATAGAGTATAAATCAGCCAAATCATTCCTAGCACC 1936492 30 100.0 36 .............................. TACTAACGTGTACCGTATAACCGACTATAAAAATCC 1936426 30 100.0 36 .............................. AAGGATAATAGTTGGGTTTTTGTACATAGTGTATGG 1936360 30 100.0 36 .............................. TATACGTAGCTCCCAGAATCTGTTTGAACTCTGTAA 1936294 30 100.0 36 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTC 1936228 30 100.0 35 .............................. TAGAAATTGGGATAAGCAGCTTTTAGAATTGCCAT 1936163 30 100.0 36 .............................. ATGTGGAGGTGGCGGTATGATATGTATAGGGCTAGA 1936097 30 100.0 36 .............................. AAAGTTTAAACCCTGGACGTTGTATGTTTGCGCCTG 1936031 30 100.0 39 .............................. AATACCCCAAAATGAAGGTTCAAGTCATTCGAACAACGA 1935962 30 100.0 37 .............................. CCAATTTTGTCTTTGTCCTCGTCAACACCTTGACCAA 1935895 30 100.0 36 .............................. TTAAATGATCCTCCGGTAACACTAGAAGCCGGAACA 1935829 30 100.0 37 .............................. AGCTATACCATATCAATACAGATCTTGCACCGTGATA 1935762 30 100.0 39 .............................. CACTTCCGGGATGGTAGTCAGTGCCATCGGGCTTGACAT 1935693 30 100.0 36 .............................. TCGTTCAGCCTCCCTATGCTACATACCGGATGTAAT 1935627 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 1935561 30 100.0 38 .............................. TTGCAAGTCAGGTAATGCCTTTTGATACCGGTACCATG 1935493 30 100.0 38 .............................. AAGACACTGAGACTCTTTCTATTAGTATTGATGGAAAC 1935425 30 100.0 36 .............................. TGTAAATAAAGCTATGAAATTGAATGATTATATCAG 1935359 30 100.0 36 .............................. AGCAACAGAGCTACGAGTTAGGAGAAATGCCCGTAG 1935293 30 100.0 37 .............................. ATTGTATTGACTTGAACACTACCAACTGATAATGAAG 1935226 30 100.0 36 .............................. GAGTATAAGGCTAAATGGTATGGCAGAACGTACCAC 1935160 30 100.0 39 .............................. ACATTCAACACCAGCTTTCTGCCCTATGACCAACCTATC 1935091 30 100.0 42 .............................. GCCAACGTTCTAAAAATTCACATACTCTTATTTTTTCTGCTC 1935019 30 100.0 36 .............................. TCCTCAATCTGTTTTTCTGTAAACATCCACTAATAC 1934953 30 100.0 37 .............................. ATCCAAGGATGTTGACCAATGATAGTTTCATGTGATA 1934886 30 100.0 37 .............................. TCAATGACCAAGAGTGAAATTGCGAAAATACTTGCGG 1934819 30 100.0 36 .............................. TGGCCCATACTACATACCACGGTGGCTAGAAAAGGA 1934753 30 100.0 36 .............................. AGAATAGGCACAATCGGAAGTGAACAAGGAGAAATA 1934687 30 100.0 36 .............................. TTGCAGATACTACATCGGCTGGTATATCTTCTGGTG 1934621 30 100.0 38 .............................. TTAGTTTATAGGGAGATATTGAATCTCCCTATAATAAC 1934553 30 100.0 37 .............................. ACAAGGCGGGAATGGGTGAACACTTTACAACTGTATG 1934486 30 100.0 37 .............................. AGTTTCCGGCATCTCATCCCAAGTCCGTTCATCCAAA 1934419 30 100.0 38 .............................. TAAGTTGGGCTTCTAATAGAAGTTCTGGTGCTGTTGGA 1934351 30 100.0 38 .............................. CTTGATTTTGATTTTCAAGCGGATTATGCTTCAAAAAA 1934283 30 100.0 36 .............................. TATTACCATAGCCAAGCGGCGGTAAATATCTCACAT 1934217 30 96.7 38 .............................T TGTAATAGCATCGACAATAATGTTGTCTTGATTCAGTC 1934149 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 49 30 99.9 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3497697-3495792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016502.1 Acetivibrio thermocellus DSM 2360 strain LQRI chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3497696 30 100.0 37 .............................. TCCTGGACGGTCTGGTCCAGGCTGGGGTGCTCCCGGG 3497629 30 100.0 37 .............................. TACCACCCACCCTTGAGGAAGTAAGAGCCTACTGCCA 3497562 30 100.0 35 .............................. TCCGGCTCGCCGCTCATGCAGTCAAGGGCAAGGAC 3497497 30 100.0 40 .............................. ACGTAACAAAAAAATCGAAATCATTGCAAATTGCATACTC 3497427 30 100.0 38 .............................. AGGAACTCCTGAAAGTACCCCTCAGAGGGTACAAACGC 3497359 30 100.0 40 .............................. GCTCTAAAACCTTCATACCATCATCCTTTCTTGACACCTC 3497289 30 100.0 38 .............................. TGATATTGTGCCATGAAATTTTGTTCAGGAAGTGCGTC 3497221 30 100.0 36 .............................. AAATTAAATGTGAAGCATCCAATGTCAATCTTTGTT 3497155 30 100.0 35 .............................. GTGCTTCAAGTTGTTCATCCCTGGTTTTAATATCC 3497090 30 100.0 36 .............................. TTAATTCAGTGCATACACAGCTTACCCAATGCATTA 3497024 30 100.0 31 .............................. ATCCAATCCAATCCAATCCGAATCCAATCCT 3496963 30 100.0 35 .............................. ATGTGAATCCGGAGGCGGGGGTTATAGCTACCCTG 3496898 30 100.0 38 .............................. TTATAAAGAGTTATGCCGGTTATATTTTCGCTTACAGT 3496830 30 100.0 36 .............................. TTGTGCGCTCGCTAGCACCTGTTTTTTCGTTCTTAT 3496764 30 100.0 36 .............................. AAATGCAAGTCGATACTATAACAGCAATTGAACAGA 3496698 30 100.0 39 .............................. TGCTGACTATATCAGAAAATGAACTTGAATCACAAGCAC 3496629 30 100.0 38 .............................. AATTTGGAGGGACGAAACTGTCAGACCCATCAATATTA 3496561 30 100.0 39 .............................. CACATTATATCTCAACTCCTAATTTCTCAATTTGTTCTT 3496492 30 100.0 36 .............................. ATATGGCAAACAATTTGATAACATCCTTTTCAGTCA 3496426 30 100.0 40 .............................. TATTTCCATCTACTTCAAGCATTGGTACAGATTTAAACCC 3496356 30 100.0 38 .............................. TGTTCCTGCGTGGAAAGGGAACAAAACATCAGGCTCAC 3496288 30 100.0 35 .............................. CTCCTATAGATTCTTCCTTTGGTTGGAGGCTTCTA 3496223 30 100.0 38 .............................. ATAGTGAAAACTTTCATTGCTTTCATACAAATCCCTCC 3496155 30 100.0 36 .............................. TTTTAATAATTTTTTCCCATCCTGCATGCACAAATT 3496089 30 96.7 35 .....................G........ AGGTCTAACCAGAACAGTATAACAAGGCTTATCTC 3496024 30 100.0 39 .............................. ATTCTATACCTATCGCATTTCTATTGTTTTTTATAGCAA 3495955 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 3495889 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 3495821 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 29 30 99.2 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //