Array 1 330635-331089 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLZG01000006.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN045028 CFSAN045028_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 330635 29 100.0 32 ............................. GGCGCTATTACCGGCGAATTAGCCGCCGGGGG 330696 29 96.6 32 .G........................... GTTTCGGGTGGCAACCGGGAACAGAGTTCGGG 330757 29 100.0 32 ............................. CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 330818 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 330879 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 330940 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 331001 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 331062 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 347233-348482 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLZG01000006.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN045028 CFSAN045028_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 347233 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 347294 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 347355 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 347416 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 347477 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 347538 29 100.0 32 ............................. TTTTCTTCGCTTCGTTAGGCGTTACTGCTGAT 347599 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 347660 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 347721 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 347782 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 347843 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 347904 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 347965 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 348026 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 348087 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 348148 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 348209 29 96.6 32 ..........T.................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 348270 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 348331 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 348392 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 348453 29 93.1 0 A...........T................ | A [348479] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //