Array 1 29049-26960 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZIA01000003.1 Moraxella catarrhalis strain COPD_M7 NODE_3_length_83179_cov_10.3801, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29048 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 28988 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 28928 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 28868 28 100.0 6 ............................ TGATTT Deletion [28835] 28834 28 92.9 0 ..........................CT - Deletion [28807] 28806 26 92.9 32 --.......................... TTGCTAAGCCGATGCCTGATACAATGCCGCCA 28748 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 28688 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 28627 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 28567 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 28507 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 28447 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 28387 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 28327 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 28267 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 28207 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 28147 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 28087 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 28027 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 27967 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 27906 27 96.4 0 ...........................- - Deletion [27880] 27881 22 75.0 32 ------A..................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 27827 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 27767 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 27707 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 27647 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 27587 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 27527 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 27467 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 27407 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 27347 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 27287 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 27227 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 27167 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 27107 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 27047 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 26987 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.7 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //