Array 1 438780-439809 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJQU01000017.1 Listeria monocytogenes strain BCW_4307 PROKKA_contig000017, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    438780	    36	 100.0	    30	....................................	ATTTTTTCATTCCAAACTCCTTCCACAAAC 	
    438846	    36	 100.0	    30	....................................	CTTAATAGCGGATTGATTGGTAGCGATGTA 	
    438912	    36	 100.0	    30	....................................	TGACCTTTTGTTTTCATTTCCGAGTCAATA 	
    438978	    36	 100.0	    30	....................................	ATAATGTCGACACGTCCGATAGATCGAATA 	
    439044	    36	 100.0	    30	....................................	CAATATTGGTAATAACTATGGCATTCCCAT 	
    439110	    36	 100.0	    30	....................................	AAAAGTACTAAAGTCACCAAAATAGAAAAC 	
    439176	    36	 100.0	    30	....................................	GAACACTATCTCGATATTCATAATATATGA 	
    439242	    36	 100.0	    30	....................................	TAATTATTGATGAATTCCCGGTCAATTGTT 	
    439308	    36	 100.0	    30	....................................	TCCGCACCTTCAATTTAATTTTAAAGGTTA 	
    439374	    36	 100.0	    31	....................................	TGCTAGGTTACTCAGAAGCTTACACATTCGA	
    439441	    36	 100.0	    30	....................................	ATTTCTGCTTGGATTGATTGCGGATTTTCT 	
    439507	    36	 100.0	    30	....................................	GTAAGTAAAACCGGACGACTCGATGTGTCG 	
    439573	    36	 100.0	    30	....................................	AAAAGGGGTGTGCTTGAAATGGGTGTCTCC 	
    439639	    36	 100.0	    30	....................................	AAAATCGGCGATACCCTAACCTACTTCGGT 	
    439705	    36	 100.0	    30	....................................	AGACAAAAAAGGCGAGGTACATTGGACGAA 	
    439771	    36	  86.1	     0	.............A.....C.....T.A.......G	|                              	A,A,C [439796,439802,439805]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.1	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   ACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATCCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAGG
# Right flank :  GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//