Array 1 788-3013 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZWN01000024.1 Neisseria meningitidis strain Neisseria meningitidis isolate B312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 788 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 854 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 920 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 986 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1052 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1118 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1184 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1262 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 1328 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 1394 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 1460 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTTCAAGAG 1526 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 1592 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1658 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1724 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1790 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1856 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 1922 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1988 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 2054 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 2120 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 2186 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 2252 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 2318 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 2384 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 2450 36 100.0 30 .................................... ACGAAGCAAAAGGAATGATTGAACACTACT 2516 36 100.0 30 .................................... AATGTTAAACATTTTGTACGGAAAAAATAA 2582 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 2648 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 2714 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 2780 36 100.0 30 .................................... TGAAAACGCCGTCCTGAAAAACCGCGAACT 2846 36 100.0 30 .................................... ATAAAAAATAAAAAAAATCAAAAATAGTAA 2912 36 100.0 30 .................................... TATCTTCCATCGCCCACGTTTCAGGCACGC 2978 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //