Array 1 693-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOP01000099.1 Lacticaseibacillus paracasei strain LPC37 Contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 692 28 100.0 33 ............................ TGAACGCGGTTCTAATGTCTGACAACAACGGCG 631 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 570 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 509 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 448 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 387 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 326 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 265 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 204 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 143 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 82 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CTGACAAGGCCAATACGGCTTAACAAAACATCAAGTTTTCCCCGCACATGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 407-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOP01000018.1 Lacticaseibacillus paracasei strain LPC37 Contig_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 406 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 345 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 284 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 223 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 162 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : TGATCCCGCTGTCTTGCCTCACGCACAGTTTCAGCAGC # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 833-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOP01000136.1 Lacticaseibacillus paracasei strain LPC37 Contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 832 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 771 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA G [748] 709 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 648 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 587 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 526 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 465 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 404 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 343 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 281 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 220 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 159 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 98 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 37 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTGACAAGGCCAATACGGCTTAACAAAACATCA # Right flank : CCACTTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //