Array 1 4767-4493 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKTS01000038.1 Proteus mirabilis strain AS012436 AS012436_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4766 29 96.6 32 ............................A GATGATGTCTTAATGACGATTTTGCTGTGGAA 4705 29 96.6 32 ..A.......................... TCAATAACAGCATGTATTAGAAATGATTCTGA 4644 29 100.0 32 ............................. ATGACGTATTTGTGTTTAAGGCTAACGTCGAC 4583 29 96.6 33 ............................A GAAATTCCGTATTTTATGCACACAATTTAAAAT 4521 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.0 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGCTTCATTAGTGTTCCCCGTGTATACGGGGATGAACCGAGCAGAAAATAAAAATGATGTTAGATGGATTAGTGTTCCCCGTGTATACGGGGATGAACCGGCCATTAGTGGCATTTCAGATAATGAACTCCCGTGTTCCCCGTGTATACGGGGATGAACCGCCGTAAGTGACCAAAGTAACGTAGTGATACGTGTGTTCCCCGTGTATACGGGGATGAACCGTGACTTTAATTCCGTTTTCTTTTGCTTCATTAGTGTTCCCCGTGTATACGGGGATAAATTATCATCAAGTCTTCTCTCTTACTTGGTATGTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14275-13636 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKTS01000038.1 Proteus mirabilis strain AS012436 AS012436_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14274 29 100.0 32 ............................. CGTTTAGTGATACAAAGGTTCAAATTGAACCG 14213 29 100.0 32 ............................. CAAAAAGAAAATGTGAAAAAAGGCGTTTCAAA 14152 29 100.0 32 ............................. AAAACTAATTTACTTAAAAAAGCTTCTTCACA 14091 29 100.0 32 ............................. TAATAGAGCGAGAATATGTTAACGAAAATTCT 14030 29 100.0 32 ............................. ATATCGCAGATACATTGGCAGGTATCGAGGGC 13969 29 100.0 32 ............................. CCTAACGGTAGCCTTTATCTCTTTTGCGGTTC 13908 29 100.0 32 ............................. TCACCAGCCACACCCAGTGGCAAGTCGTTATT 13847 29 100.0 32 ............................. TAAATAAACGAGAGGACTATAAAATGTATATA 13786 29 96.6 32 ...............G............. GGTTGAATCCCGTCTGGATCGGTAAACATGTC 13725 29 100.0 32 ............................. TTATCTGCTGTTTTTAGGTTTAAGCCCGTTGA 13664 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATTTTGTAATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //