Array 1 14488-15607 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734739.1 Planktothrix prolifica NIVA-CYA 98 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 14488 35 100.0 38 ................................... GTTCAGTTTTAAAGTATATCGCTGACCTACAACTAGGT 14561 35 100.0 39 ................................... AGTTACCCTATTGGTTCTCCTGTGATGGGATCAATAGGT 14635 35 100.0 37 ................................... TTCGATAAACCATTATAATTGTCGACTTTGGGAACAC 14707 35 100.0 37 ................................... TGATTCTCTTCATTGTATTCTACTACTGAAAAAAAGA 14779 35 100.0 38 ................................... TAAAACAGTACCTACAGTAGGCTCTTTTAGAAGCATGA 14852 35 100.0 35 ................................... GAGAACCAATAGGTTCTCTTCGTTGTGGGGTACAG 14922 35 100.0 37 ................................... CTTGGAAACATCCAAGGTGTCGTTTCCGAGGTCACCA 14994 35 100.0 39 ................................... CTCTTGAACATTATCAATATAGCCAAAAGATGAGAAAAT 15068 35 100.0 40 ................................... TTGTCACCGGGATCGGTAATTGGATCCCCGCGGAGTGAAA 15143 35 100.0 31 ................................... TTTTCCTCCTCCAAGATCACCAGGATCCGTG 15209 35 100.0 40 ................................... GCAGCCTATTTTTGAATAGGTTTATACTCTTTAATCTCTG 15284 35 100.0 38 ................................... AGAGTTTCAATATCCCGGATTCGGGATAAAAAATTCTC 15357 35 100.0 41 ................................... CTATTTAAGCAAAATAATCCCGTGGTAAATGTCACCGTGTG 15433 35 100.0 36 ................................... TATCAGTTCTTACGAAAACATGGCGACCTTTTTGAT 15504 35 100.0 34 ................................... TGTCTCCTCACTACCTAATAGTTGGTAGAAAATA 15573 35 94.3 0 T.................................A | ========== ====== ====== ====== =================================== ========================================= ================== 16 35 99.6 37 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : GAGTTTCGCGCTCAAATTGTTGACTCGTTTGTGAGTTATTTAGTCAATTCTAAAATTTTATTGCTTGAAGATTTTACCTCTCCTGATGAATTGGGTGGGGTTTATCTTCAGCCGGATGCACTCAAAAAGTACCTGAAACACTGGGAGGAAAAGTTATATTCTGAAGTGACTCATCCTCAAACAGGATACAAAGTTAGTTTACGACGTTGTATCGAGTTACAAGTCCGAGAGTATATTGCGGCTTTGATGGGAGAGGTGGAAGTTTATCGCCCGATGATTTGGAAAAATTAAGGATACAGGTTAAGTTTCTGAGGGGGTCTGGGAATTGCTGAAATCCTCATTCTTGGGTTGACCCCCTCAGATCGCCCTCTCTGTATCGATTTCAAGGATCGTTTATTGTTGTTTATTGAGAATAAATAGTATGGATTGAAGTCAAAACTTGACGCCCTCAGATTTAGGGGTTTATAATCCAGTCAGAGCAAGGCTTCTATGAGCCTAGA # Right flank : ATTAAAAATAGTCTCAGCCTTGGATTTTAAAATATCCGAGGCTTTTTTAGATATAAAATCAAGAAAATATACTCAAAAAAATATTGAAAAATATATTAAAATAAGAAAGATATATAACTTATATACAAACTTATATAAACCTTAATTTTACCTAGATATAAACCTATATAAAGCTCTGCAAAAATTAGCTCAAAGGAAAAAATAAACCGTAAAAACTAATTACTGTTTACGTTTTTCCTGAGTTTACCCTAGAGTTAAATTGTGTTTATGCCAACAATTTATGTCATTCATCCAGGTTCCAGTATTGACGTGCATTCTCGTTACCTGCAAGTTTTCCATAAACAGCAGTTGTGTTTAGGGGTTCCCATTAACCGAGTTACCCAAATTATTCTGTTTGGTATTTGTAACCTCTCCCGCAAAACTCAAGTTTTAATTGCAACTCGCCAAATTCCTGTCTATTATATTAATGTTCATGGGGATCAGTTAGGAAGTTTAGAACT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 23852-24352 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734739.1 Planktothrix prolifica NIVA-CYA 98 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 23852 36 100.0 44 .................................... TGGCTCAGGTTTTGGAGGATTGATAATGGGGTCAGTAAAATTTT 23932 36 100.0 38 .................................... TAAGATTCTTCGTATTTATCATTAGGGACACCTCTTTA 24006 36 100.0 37 .................................... TCAAAGGCATCAATAAAAATAGGGACAAAAGCCTCAA 24079 36 97.2 53 ....................A............... AGGTATAGGCAGTTGCCAAATTCCTCGATAAACCACTTTCGGTTTGCTTGGGT 24168 36 97.2 42 ....................A............... ATACGAACATTTTGGATATTGTACTGGTTTTGTTCATCAGTA 24246 36 88.9 35 .......C..G......A..A............... CAGGTAATGACAGCACAAACCAGATTAGGAAAATC 24317 36 86.1 0 ..T...................A...C...AA.... | ========== ====== ====== ====== ==================================== ===================================================== ================== 7 36 95.6 42 GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Left flank : ATGCAAACATGGCTGTACCAATTATGGAATATCTAAAACCTTTGGTGACGGGAGAGGAAAGGGTTAAATTCACGAACCTTATTAATCACCTGAATTTGATTGTGGGAGGAAGTTTGAATGTCGGAAGAATGTGTGAAAAATGGTTACTATTGTCCTTTTGTTCAAAATCCTCATCAATTGGATCAATATGTTTGTCTCAAGTGTGGAATTAAACGGGATTTAGAAAAGAAAGAAAAGTCAGAAGTGTTGGATTTTATCATCCTTTTTTTAGTGGGGATATTAATTGCAATTGTATTTTTTAGGCGTTGATGGATAGGTTTGCGAGGCTGCGGTAAAATGGCTACAATGTTGATGGTATCGTTAGGAGGCTCGATAGTCGATGGGGAAAGGGTTTGACGGGTTTTTAAAGGGTGTGATCATGGGGTTGGAGTGGTCAGATTTCCTGAGCCTCGCAAACTGGGTCTGGACATTCGGTGACATATAGGGTTTAAAATGGAGGG # Right flank : CCTAATAAAAAATCCCTGACTTAGCTTGAGTTCAGGGATTTTTTATTGATAAATTTTAAGTTTGGCGTTTTATAAGCGATCAGCTAAGTCTTGAAGATTTTGTTCAATTAAATTAACATCAGAGTTATCATTTAATAATCCCAGAGAATGCAAAGCTTTAATAAATGGTTTTTTAACATTCAGATTATAAACCTTTTGAACATTTTGGTTTTCGTCAATATTAGTTTGGTTGTTTGGATCAATAAGATAACGAAGAATATCTTTTTTTTCTCCACCTCTCAAATTATGAACATATTGGTTTCTTAAATCTAAATCATGGGTTCTGCTATATTCACAAGACCATTCTAATAACTTCCACTCCCAATTTTCAAGATTTAGTGTTTCTTTAGCCAAACGTTGCAGCCACAGAAATAATCGAAAATTCATTAAGTTATACTGAAAGTCGTTCTTGCGTTTTTGCTGATGGCAAATATAATTTAAAGTAAAATCATTATGCCAGT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Alternate repeat : GTCGCCCTTTTATTGGGGTGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 44646-45081 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734739.1 Planktothrix prolifica NIVA-CYA 98 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 44646 36 100.0 44 .................................... ATGACAATTCTTTTAGCTTCAGTAATTGAATAAGGCAGTTTCCA 44726 36 100.0 40 .................................... TACGAAATAGACGGCGGTTTGTATTTCTCCAATTGACCTT 44802 36 100.0 45 .................................... CAGTTGTGAATACTTCATGTTTATTACTTTTTAGTGTACCCATTA 44883 36 100.0 48 .................................... TAATCCAGAGATCTTTCCAGCGAGTTACTAATTGGGATGTTGTATCTT 44967 36 100.0 43 .................................... ATACTCTAAGTTAAATTGCTTTGAATACTCGCTTTTTGTAGCG 45046 36 91.7 0 ................................GT.T | ========== ====== ====== ====== ==================================== ================================================ ================== 6 36 98.6 44 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTTTCATTATACCCTATTTAGATGCTGAACAGCTTAATGGATTCAAAAATATTTATTCAGTTATTGCTGTATCTCCCACGAATTACGCAAATATTCCCGCTCTCGCTTAGACGCTACTTTGACAGGGGGAGGAGGGTGAGAAACCATTTTTGCCTTCTTACCCAACTTTACATCGTGCTAAATTTTGCGCGTATCTTGTCTTTACCCCATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : TTTGTTCAACATGAATTCAACAGGATTAGGAGAGTTGCTAATCCTGTTGAATTCATTGATTGCTTGATTAAGTTGTAAAACTTGACAATAAATTGAGTTATATTTTATTAACAATATTAAGTAGGTAAACTTAATATTGTTCTAAGAAAAGCCTTGTAAGTCTGGTTTTAATTGATTGATTCAACTGATTAATTAACTTATGCAATAGCGGAACATAATTCTGTAGAGTCTAAACCTTCAAGGCTTTTTAAATTCTGAAGAACTTGGAAGTTACCTGAACCAAACAAATGTAATTCTTCCTTCGCCCTCGTCATGGACACATACAGTTCCCGCCGCCCTTCTGCTTCATTGCCGACACCAAACTGTTGTACCCACAGAATCAACACCGCTTTGAACTCTAAACCCAATGAAGATTTAGCCGTAATGATTCGCACCCCAGGACGACGATTGCTATACTCTCGTTTATCCTGGTTTACCCAATAATACCCCATCCCCAACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 105632-104542 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734738.1 Planktothrix prolifica NIVA-CYA 98 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 105631 36 100.0 36 .................................... TGCATATACTTTATTGTTGAAGCCTTTAGATAATAA 105559 36 100.0 42 .................................... GCAAGAGCAGCTAAAGCAGGTTTCCACCGATTAGGTGGAGGA 105481 36 100.0 31 .................................... TCTTAAAGTAAGGCTAGTTATCTAGCCTTAC Deletion [105415] 105414 36 100.0 38 .................................... ACACAAAGTTACGAACTATATAAACGTCCTTGGTACTA 105340 36 100.0 41 .................................... AAACTAGCTAACTCTTTATCCATTAACTTTGCGAGGAAAGG 105263 36 100.0 39 .................................... ATCAAGTAGAATCTCTGCATCAATAGCAGAAATAGAATT 105188 36 100.0 40 .................................... AGTGGAGGATTTCAACGGTTTCGGCTGTGAATTGTTTGGT 105112 36 100.0 36 .................................... TCGCAGTTTTTCACTGTGTCCGTCAAATTTCCTACA 105040 36 100.0 41 .................................... AAGACCCTTATCAATTCCTTTTCCTGTAAAGTAATGTTTAA 104963 36 100.0 42 .................................... AGCTTTGGATGCTCCATGACAAGTTCAAGTCTGTCGTCATAC 104885 36 97.2 41 ...........C........................ CTACCAGAGGAAATCATTATGTTCAAACATCCTTTTTGTGC 104808 36 97.2 48 ...........C........................ AGTTTTTCAGTAGTATGTCCACTATGCCACACAGTTTGAAAGTCTCGT 104724 36 97.2 37 ...........C........................ TTGTTTCACTTGTCATTTAGAGATTCCTTTGTTGTAA 104651 36 97.2 38 ...........C........................ TCGACCTCGATCACCACTTCAACCGGAATCGCAACAGG 104577 36 97.2 0 ...........C........................ | ========== ====== ====== ====== ==================================== ================================================ ================== 15 36 99.1 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : CCAATCAATTAATTTCCCTAGCGAGTAGGGAGGGTGTTGAAATCGAAGTTTTGATGTCTCCTGATTTAAACCGAGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCATTCCGAGCCATGTCTCAGGGTGTCTACGGGGCGGGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGGATAGGAGAGTCGAGAAAGTTTCTTGACAGAGTTCCATTTAATGTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCTAAGATTGAACTGATTCCTGGTCAGTGTCTTCCTTCCTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCCGGTCGAAAGTTCAAAACCCCTATGACGAAATTAATAAGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCTCGCCATTGGGGAACAGGTAGCAATCAATAACTTTGCTCCCTAGATTCAATTCTGCACGGATTGATCTTACAATATCTGACA # Right flank : GTGAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATCTAACTTTGGGGGACACCTCTACCGCAAGAATACTGTCCCCAGCCTGACGCTCTAGCAGTAAAGGCAATTCCCCAGCCGGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTAGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTCAATCCGATCGCACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 105716-106992 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734738.1 Planktothrix prolifica NIVA-CYA 98 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 105716 36 100.0 40 .................................... TTATTAATTTCGTCATAGGGGTTTTGAACTTTCGACCGGA 105792 36 100.0 39 .................................... AGGAAGGAAGACACTGACCAGGAATCAGTTCAATCTTAG 105867 36 100.0 45 .................................... ACATTAAATGGAACTCTGTCAAGAAACTTTCTCGACTCTCCTATC 105948 36 100.0 37 .................................... CCCGCCCCGTAGACACCCTGAGACATGGCTCGGAATG 106021 36 100.0 43 .................................... CTCGGTTTAAATCAGGAGACATCAAAACTTCGATTTCAACACC 106100 36 100.0 41 .................................... TGGCGGTCACCATGTCTAATTTAGACATAATCTTAGAGGTA 106177 36 100.0 44 .................................... ACTGAGTACCATCAGAGGATTCACACCAGTGTCAAGTGCAGCAA 106257 36 100.0 43 .................................... TGGATTGCTCATTGACTTAACAGCATCAATAAGCACTGCTGAA 106336 36 100.0 35 .................................... TTCCGGCTAACAGGTGCATCAAATCATTGGCTAAT 106407 36 100.0 47 .................................... CATTGATAATCAAGCCAACTTTCAAAGCATTCATCTTGATAATTTTT 106490 36 100.0 44 .................................... GGGAGAGTAAACTTAACAGCACCTTTGAGAAAGGAAGGACCATC 106570 36 100.0 42 .................................... AGTTCATACACACATGAAACTATATCCTAATCAGCCAATGGG 106648 36 100.0 42 .................................... AGTAAAGGAATGTGAGACTTGTTAGGCGGAATTCCCCTCCCT 106726 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 106812 35 88.9 3 ........................-A...C....G. GCA G,G,CT [106835,106842,106845] Deletion [106854] 106854 35 80.6 66 ACAA......-...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTA C [106857] 106956 36 77.8 0 A.T.A...........A.............C..TCG | C [106985] ========== ====== ====== ====== ==================================== ================================================================== ================== 17 36 96.9 41 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : ATTCTACTTGATGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGCCTTTCCTCGCAAAGTTAATGGATAAAGAGTTAGCTAGTTTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTAGTACCAAGGACGTTTATATAGTTCGTAACTTTGTGTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGGTAAGGCTAGATAACTAGCCTTACTTTAAGAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTCCTCCACCTAATCGGTGGAAACCTGCTTTAGCTGCTCTTGCGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTTATTATCTAAAGGCTTCAACAATAAAGTATATGCAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTGTCAGATATTGTAAGATCAATCCGTGCAGAATTGAATCTAGGGAGCAAAGTTATTGATTGCTACCTGTTCCCCAATGGCGAGA # Right flank : GCACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTTATCCGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGCTAGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCTGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTTAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGCAAAATAAGTCTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCTGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTACC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2060878-2059575 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734738.1 Planktothrix prolifica NIVA-CYA 98 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2060877 37 100.0 42 ..................................... TCCCCGTTCTTGCTCACGATGTGAGTCTTTATTGCATCCTGA 2060798 37 100.0 43 ..................................... CATTTAACTCTCCTAGGTATTCAGTGGTTTGGAGATAATAGAT 2060718 37 100.0 35 ..................................... ATAGGACAATATTCTAGGGTTACAGTATTGCCATT 2060646 37 100.0 41 ..................................... TCAAAGATATTAACCATCAAACCTTCTAAGGGTTTATCAAA 2060568 37 100.0 39 ..................................... AACTTGTGTAACGAACTAGGGTATATTGACGAGCGTAAG 2060492 37 100.0 34 ..................................... ACTATATCGCCAACGTCGAGCCATTAATCTTTGA 2060421 37 100.0 35 ..................................... GTCAAAACTGTATCAGTGTTAATATGACTATGTGA 2060349 37 100.0 38 ..................................... GACGACAGTACAGGGATGGATTAAGTTTTGCCATCAAC 2060274 37 100.0 35 ..................................... AATATCCCCGTATTCGTACCCGTATTTTGAACCAG 2060202 37 100.0 37 ..................................... AAGTAGTCTTATATCCCACTCAAGGGGATGAGTTAGA 2060128 37 100.0 37 ..................................... ACAAAATCCCACTAACAGGAATCTGTCTTGTTTGCAA 2060054 37 100.0 37 ..................................... CAAACGATTGAATGATTAATGATTAATATCTAAACAT 2059980 37 100.0 37 ..................................... GGGAGAAAAATCTATCCCCAATGGTTGAGTCTCGCAT 2059906 37 100.0 37 ..................................... GAAGAGTAAACTTTCCAGTCGCCTGTTTTATTGCCAA 2059832 37 100.0 37 ..................................... AACTCGATGACCTAAAAGGTTATTGTGAAGCTGCCCA 2059758 37 100.0 36 ..................................... CGGCGGTCGTTTTGTTACTTCGCTGTGGGTTGGCTG 2059685 37 100.0 37 ..................................... CCGCGCCTTCCTTTCTGGTCTGTGATAGTAGATTCTG 2059611 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTGAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGAGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAATTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 4 2812440-2812252 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734738.1 Planktothrix prolifica NIVA-CYA 98 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2812439 37 100.0 41 ..................................... GCCATAGCCTCCGCGTTACTGCAAGGATCACCGTAACTTCC 2812361 37 100.0 36 ..................................... GCCATAGCAGTTTTGCCAGCCCACGGCCCTACAGCA 2812288 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 39 ACTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACTTGATCGCTGATGTCAATTGATCTTTTCTGCGAGGCTCAGGTAAAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAATCGGTAGGGATTTTTAAATCCCGTGAAACGATTGCGTGGCTTTAGCCATAGTGATATAATCAAAACAAAGCAAGTAAGAATAACCATCTGCGTGTTGAACCATCCTAGTGCGGAGTAATCCCGGCAACGGACATATCCGACTCGATTCGGAATAGTTAAAGGGCAAATAATGGCAGGATGTTGAGCGTACCTAACTGGCGTTGTGATGGACTCGGAAAGCGAAAAAAATCAAAGTAAGCGCAATTGCAATACCTGTCGTACTGGTAGTTGTTTTGAGCGTGTAGGGTGTCTTGATAGCACCATTGAAACGGTTCACAGATCTTCAAGAATCCCCCGGCTTCAGACGTGGGGAGTATCAAGTATGGGTTTAAAATGGGAGG # Right flank : TCGTTGAAATAGATGGGGGGGGGTGGAGTTTTCTTTCTTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCCACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCAAATAAACGACCAGCTAAAACCCATCTGCTCTTGTGATTACCCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTATGGATTCTCTCTGTCGAGTGTCAAATCAAAGCAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAATAAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 3287875-3287164 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734738.1 Planktothrix prolifica NIVA-CYA 98 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 3287874 37 100.0 42 ..................................... ATATAGCCGCTTAAATCCATCAAAACTGATAGGGTGACTCTT 3287795 37 100.0 35 ..................................... AAAAAGACTTCTCAAACCATTGATCTTCTATGGGT 3287723 37 100.0 35 ..................................... TTAACCGACAAGATCAACCAAGCTATTAAAGCGAT 3287651 37 100.0 37 ..................................... ATTTTAGTTACCAGATAATTTTTTACGATTAACTGAT 3287577 37 100.0 47 ..................................... TAGGAAAAGATCAATAGGCTGTAATAAAACTTTACATATCCCTAGAA 3287493 37 100.0 37 ..................................... TGGACTCACTCGCTCCTTCTACCGTTGATCGTATCTT 3287419 37 100.0 37 ..................................... AACAATGCTAGTAAACTTGTGTTAACTATGTTAGACT 3287345 37 100.0 36 ..................................... TATCAAGGCGATCACCGACAAAATTCTGATGGAAGA 3287272 37 100.0 35 ..................................... ACATGGATCAATTTTTGTAAGTCATACTCCAAAGG 3287200 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 10 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTTTCAAGTTCAATCTTAAAATGCGTAGGAAGATTGAAAAAAACTAGAAAAAACGACTTAAAGTTCCTCAAATTGTAAGTTAGATCAAAATTAGATGAAATTTAACAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATCAGCCAAAATTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGAGTCATTGTCGAAGAATAATAGCCATTAATAAG # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGAGTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //