Array 1 3161565-3159156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890524.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3161564 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 3161503 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 3161442 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 3161381 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 3161320 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 3161259 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 3161198 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 3161137 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 3161076 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 3161015 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 3160954 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 3160893 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 3160832 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 3160771 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 3160710 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 3160649 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 3160588 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 3160527 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 3160466 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 3160405 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 3160344 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 3160283 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 3160222 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 3160161 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 3160100 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 3160039 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 3159978 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 3159917 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 3159856 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 3159795 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 3159734 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 3159673 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 3159612 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 3159551 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 3159490 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 3159429 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 3159368 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 3159307 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3159246 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3159185 29 93.1 0 A...........T................ | A [3159158] ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3179688-3178072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890524.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3179687 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 3179626 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 3179565 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 3179504 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 3179443 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 3179382 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 3179321 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 3179260 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 3179199 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 3179138 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 3179077 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 3179016 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 3178955 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 3178894 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 3178832 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 3178771 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 3178710 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 3178649 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 3178588 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 3178526 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 3178465 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 3178404 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 3178343 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 3178282 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 3178221 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 3178160 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 3178099 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //