Array 1 8666-9974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLT01000028.1 Tyzzerella sp. An114 An114_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 8666 33 100.0 36 ................................. TTCTGTTACTCATTGAAACAGCGTGAATTTCATAAA 8735 33 100.0 35 ................................. TAGATGAGTGGTATACAGGAACGAAAGTTCAGCGT 8803 33 100.0 33 ................................. AATATCAATTAACATTTGTTTAGTTGCAATTAC 8869 33 100.0 35 ................................. TGTTGTTTACCTTTTTACTGAAGGTTTCGACCGTT 8937 33 100.0 34 ................................. ATTCCAGTTTATCTGTCGACTTAAAAGTCTTGCG 9004 33 100.0 34 ................................. TAATTCCTCCTTTTTTATTTAATTAATTCCACAC 9071 33 100.0 34 ................................. TTCCTATTGCTGGAGCTATTCAGGGCAGAGGTGC 9138 33 100.0 35 ................................. TGGCAGGATATTTCAAAATATAGTGGCGGCGTTGC 9206 33 100.0 34 ................................. CCTTTTCAACTTCATTTCTGTAATTAGTTATCTT 9273 33 100.0 34 ................................. GCATCAAGACCTTGGTTTAAATCAATTTTTATAT 9340 33 100.0 35 ................................. TTAATCTGTCAGCGTCTTCATCATTTTTCTTTAAT 9408 33 100.0 35 ................................. TTTCTCATTACAAACCACCAGAGGATATAACTGTT 9476 33 100.0 34 ................................. CATACATAGCCTTTTTAAATGCTGTTGTTTTTTG 9543 33 100.0 34 ................................. GTTCAATATTTTTTCGGATAGGTGATAATATAAT 9610 33 100.0 33 ................................. ACAAATAAACTTTTGCAGTTCTCTAACGGTGCT 9676 33 100.0 33 ................................. AGCACATTCGGTATTTGTTTATATTTATAGCAT 9742 33 100.0 34 ................................. TGAGTTGTATTCTAACAATATGTTAAACAATATG 9809 33 100.0 33 ................................. TTTATGTTGTATTGTATTAAATATAATATAACA 9875 33 100.0 34 ................................. CCTATAAATGCACTAAAAAATTAAAATTTAACAG 9942 33 93.9 0 .........................A..A.... | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.7 34 GTCACGCCTCGCAAGGGGCGTGTGAGTAGAAAT # Left flank : ATGAATATCCATGTTTTTTAGTTAAGTAGGTGAAAAATATGATGGTTTTAATAAGTTATGATGTAAGTACAAAAGATAAAACAGGAAAAACCCGTCTTAGAAAAGTTGCAAGAGAATGTCAAAATCATGGACAGCGTGTTCAAAACTCAGTGTTTGAAGTAAATTTAGATTATTCATCTTTTTTAAAGTTAAAAGATAGACTTCTTAAAATCATTGATGATAGTCAAGATAGTCTTAGATTTTATTATTTAGGGAATAATTGGCATAGAAAGGTAGAACACATAGGAGCAAAAGAAACTTATGACTCTGAAGGTGTAATTATAATATAATTTTTGGGCGAAGTATAAGTGATGTAAAAATCCTGTTAGGTTCGCCATATAAAAGCTATATTTTTTATATTATTTATGATATAATTTTAAAAATGTAATTTTTTAATATTATATTTTAATAAAGTCCGCCCATATATAGTGGAGTGACCCTTTATAATACAATATATTGCG # Right flank : TCATTTTTAATAGTTTTAATAGTTGTTTGATTTGTTGTCATTAAAATATAAAAATTATTGAATCTATTAAGTTAATATGAAACAAAAAATATATCCACGCTCTAATGATAAAAAGAAACAATCTACTTAAAAAATATTATTAAAAATCCAAATATTATAGTAGGAGATTATACAATATATAATGATTTAAAAAACAATCCAAAAAATTTTGAAAGAAACAATGTTTTATATCATTATCCAATTAATAATGATAAATTAATGATTGGTAAATTCTGTTCTATTGCTTGTGGTGCTAAATTTATATTTAATAGTGCAAATCATACGTTATCATCACTTTCTACATATCCATTTCCCATATTTTTTGAAGAATGGGAATTAGATGTTAAGAATATTACAAATGCATGGGATAATAAAAGAGATATTGTAATTGGAAATGATGTTTGGATTGGTTATGAAGTAGTTATTATGGCAGGTGTAACTATTGGAGATGGTGATATAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTCGCAAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10619-10317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLT01000008.1 Tyzzerella sp. An114 An114_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 10618 33 100.0 35 ................................. AGAAATTTTAAGATGCTTAAGGTGGTCCCACTTGT 10550 33 100.0 35 ................................. TCTTTATAAGAATTATAAATAGTTTTTGAATTTTC 10482 33 97.0 34 ................................G TTTAAAGCAACCATTAATTGTTTTTTAGGCTTAA 10415 33 100.0 34 ................................. ATTATTTTAGAAAATTGAGCTGTTGTCATTTTCG 10348 32 90.9 0 .........T.................A-.... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.6 35 ATTGCAACTCGCACCCCTCACGGGGACGGAAAC # Left flank : TAGATACAATCCATAATATTTTATCATCAAATATCTGTAAAAACTGGGAATAAGGTCGTATATTTGATATATGCATTTCCTCGCCATAATCAAAAGATATATTCTCCATTATGATACCTTGAAAAAAATATGACATATTCTGTGTAATATACTGATTTTTATCTTTTTTCAGTTCAATAATAATTTTTGAAAGCATTTTTTCACCTTTTTTCTGTATAAATATGGTTTTATTTTACCATTTTAAATTACTATGTACAATAAACTTACAGTATATTTTTGTAATTAATTGAATATTATATAATATTTAGGCGAACCTATAAAAAACAAGGGCATTTTTGGAGTCAAAAAAAGGTGGTTCGCCTGAAAAAAACAGGTCTAAAATAAAAAATAGTTATAAAAAACAAAAAAATATTGATATATATGTATATTTAATATATAATATGTAGTAAATATAGATAGGAAATATAATATTTTTGTATTGGGAATAGTATATTTTCGCT # Right flank : AAAAAAGACACATATTTATGAAAACCCTTTCGGTAAACATAATATGTGTCTTTTTATTTGTTCATTATTTTATATAATTGTTATTCTACTCCTAAAGCTTTAAAAACAGCATCTTCTGCACTGTTATAAAATATAAGATTGAATGAACCTATAAGCTCTGCCGGTACAGCTCCCAAATCAACAGCCGAAGTTATAGGAATAAGAATTTTTTCGCCCCACTATCAAGACATACTTGTAAAGCATTTGCCAATTCATCTACTTTTATTATAGAGCCACTTATACTTATTTCTCCCAATACAGCAAGGCTACTTAATACAGGTTTTTCCAAAGCAATAGAGCAATAACATCTTTATCTTTAAAATTAATTCCGGCAACTTCATCAAAAGCTACACAATCCCATAATCCAACTAATCCAACTGTTTTTCTTGCCATATTGTAAAAAAGATTTGCAACTAAAGGCAACATACGAGCTAAAAGCAACCATTTTTCACTCTCTATAA # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAACTCGCACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 19055-18548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLT01000008.1 Tyzzerella sp. An114 An114_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 19054 32 100.0 35 ................................ TCTTACTGAGTCGGCTGTTTTTTCGGCAAAAGGGA 18987 32 100.0 37 ................................ TTTGAAGAAGAAAGAGCAATAGTCACAGATATACCGG 18918 32 100.0 35 ................................ TATGTATTGCATTGTGTCGCTAATATCTAATTTTT 18851 32 100.0 36 ................................ TTCAACATCAACTTTATCCGTTGCAAATAACATATT 18783 32 93.8 38 .........C.......A.............. CACATTCTTAAATGAATTTATAGAACTACCAGAAACGA 18713 32 100.0 36 ................................ CTTCTGTATTAGTCATACATATTTCAGTTTTTTTCA 18645 32 90.6 35 .........G.......AT............. CCCCCAAGATACTGTACAATCGCCTGTTGTTTCAA 18578 31 84.4 0 .........C.......AT........A-... | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 96.1 36 ATTGCAACTTGCACCCCTCACGGGGACGGAAA # Left flank : TATCATAAATTAAAAAAAGATATGAAAGAATTACTTATTATAAAATCAAATATAGATTATATTTTAAATGGTCAGTGTTCAAAAAAAGAGCTTAAAAAAACAGAAAAAGAAATATAATTATTATACTAAATTTAATATATGAGTATGTTTTTCGCCACATAATTTATTATGTGTTTTTAGGGGGATTGGGGCTTAGTCCCCAACAAGCAGAAAGGCAAAGTGGGTACCACTTTGCCCTGCTTGCCAATACTTTTAGATAAATTTTAATATAATTATAACATCAAAATAGTTTGTATATTATGATTTAGGCGAACCTATGAAAAACAAGGGTATTTTTAGAGTCAAAAAAAGGGGGTTCGCCTGAAAAAAACAGGTCTAAAATAAAAAATATTTATAAAAAACAAAAAAATATTGATATATATGTATATTTAATATATAATATGTAGTAAATATAGATAGGAAATATAATGTTTTTGTATTGTAAATAGTATATTTTCGCT # Right flank : CAAAAAGACACATATTTATGAAAAACCTTTCGGTCAACATAATATGTGTCTTTTAATTTTTTTAGTATTTGTATATAAATATTATATACATAAATTTTCAATTATAATTTCATTCATATCATCGTATGAATTCCAATACTCTTTTTTTATATTTAGCTTTGCTTTCAATGCTATTTTCTTTAACAATTCCATTATATCATAGGAATTTAAAGAAACAGTTTTTTCTATCCATTCATCTGTCACAGATATAATTTTATGTGCTGTAACATTTCTTACATTAGTTTCAATATTTTTTAAAGTTTCCAAAGTACTTATAAAATCAGTATCATTTGAAAGACTAATTAATATAATATACAACTGTGCAGATGTCAAAAATGTTTCTTTTATCTCTTTATATTCTTGTGATAAAATTTCTTTAATCATTTTGCCTTTTTCTGTTTTTTCCATTTGTTCAATATTTATTCTATAAACAGATTTATTATCTTTAATACAGAAATCTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAACTTGCACCCCTCACGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //