Array 1 153307-155285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRS010000028.1 Pectobacterium versatile strain CFBP6698 Pectobacterium_versatile_CFBP6698_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153307 29 100.0 32 ............................. CGGTAGTACGAAACACTCATTCCTGACGCATA 153368 29 100.0 32 ............................. GATATGGTTTCTGGACGAGTCCAGCGGCTTTT 153429 29 100.0 32 ............................. TCCTGAAACTTGCTCGCCAAGTTAACGCGGCA 153490 29 100.0 32 ............................. CATGAATTTTGGCAGGTTTCTAGAGTTGGGAA 153551 29 100.0 32 ............................. TATCATGACGCAGTAGTCACTCTTATCATGAT 153612 29 100.0 32 ............................. CTATGCTGCTGTCATGTAGCGTTGCGGGTAGA 153673 29 100.0 32 ............................. AGAGAAATAACAAAAATGGACGGAAAGAAAGC 153734 29 100.0 32 ............................. GATTCCGCTCATACTACGGATTGGAATCCGAT 153795 29 96.6 32 ............................A GATTCGCGCTTCGGCAAGACGTTCTTCTACTC 153856 29 100.0 32 ............................. CTGATGTATCAAATGACTGGCCGGCGCATGGC 153917 29 100.0 32 ............................. ATCAATAAACTCAATCTGGATAGGGCTGCTTT 153978 29 100.0 32 ............................. GAAACCCCATGCAGGAATATGAAAAAAATGTG 154039 29 100.0 32 ............................. ATACCACTTTTAGCCGCGCATCCTCAGTCCGC 154100 29 100.0 32 ............................. CTCATCACGCTGAATGAATGGTGCGAACGCCA 154161 29 100.0 32 ............................. AGCGCGTCCACGCAATTCGGTGTAGTGCGCGG 154222 29 100.0 32 ............................. GCTTCACCTTTATCACAGCGCAATGAAAACAG 154283 29 100.0 32 ............................. CGAGATTTAAAGCGTCACATACCATACGTGCA 154344 29 100.0 32 ............................. CCCGTTTCTGTTATGCCACTCCGCCCACGAGC 154405 29 100.0 32 ............................. GTTTCCCGACTATTCGACGTCAGCCCGGTGAC 154466 29 100.0 32 ............................. GATTAATTAACGGGAGGCTTCGCCGCCCAGTA 154527 29 100.0 32 ............................. CCTATCCGCTTGCGCCCAGACGGCTCAAATCC 154588 29 100.0 32 ............................. GCCAGTAATAAACCGGAATATCTCGGGCCGGG 154649 29 100.0 32 ............................. AGGGTTTGTTATCGGGAGATTCACGCATTGAT 154710 29 100.0 32 ............................. AACTGTTACCTGATTTGTTACCCTGTTTGTTA 154771 29 100.0 32 ............................. CGAAGTCAGAAAAGAAAAGCCTGTTCTGCTGG 154832 29 100.0 32 ............................. GCACGCACACCACATCGGAGGCGTGCATGTTA 154893 29 100.0 32 ............................. ATGCTCGGACAAGGAATTGACCAATCGATACA 154954 29 100.0 32 ............................. GATACGAAACCAAAATTGTTGATTTTGCGCGT 155015 29 100.0 32 ............................. CCGCGACGCGAACGGCGGCGCACTTTTCTGTC 155076 29 100.0 32 ............................. TAAAAACGTCGGCCACTACTTTTATTCTGTAC 155137 29 100.0 32 ............................. CTCAGTACCAGGTAACAGATAGCGATCAGATC 155198 29 100.0 32 ............................. CCAACTTTTTGTGGCTCAGTGAGAGTGACCTT 155259 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTAAAGCTGATGCCGATGAAAAGGCCGCAAAAGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGAACGTCTGCATGATGCGGTATTTTTCTTCCAG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19835-19379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRS010000055.1 Pectobacterium versatile strain CFBP6698 Pectobacterium_versatile_CFBP6698_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19834 29 93.1 32 .....T.............A......... GAATTACGCGCTCAGGGGACTACGCCAGACGC 19773 29 96.6 32 .A........................... TAATGACCGGGTTTCGGATTGCCGGGGGTGTC 19712 29 96.6 32 ............T................ AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 19651 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 19590 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 19529 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 19468 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 19407 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTAACCAGAGTCATTAGGCCGCTGCCTAGGCT # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163918-162751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRS010000025.1 Pectobacterium versatile strain CFBP6698 Pectobacterium_versatile_CFBP6698_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 163917 28 100.0 32 ............................ GATAAAGATGGCAATGAATGAACCTCGTACGG 163857 28 100.0 32 ............................ ATCGGGCAATAGCTTTCTGGATGCCGCTCTAT 163797 28 100.0 32 ............................ TCAGTGGGCGGCTAGTCTGTTCTTTCCATGTA 163737 28 100.0 32 ............................ TCCGAGCACTTTAGTTCCATATTTATTTTCAT 163677 28 100.0 32 ............................ TTTCGGCGGTAAGCCTAAACATCTGAAAGATA 163617 28 100.0 32 ............................ TGAATTGTGGTTTTTTTTAAATTCATTAAAAA 163557 28 100.0 32 ............................ AGACTCGATGAGTTTTTCTTTCGCATCTTTCG 163497 28 100.0 32 ............................ CTGCGTGCTGCGGATGCGCTGATAGAACAGAA 163437 28 96.4 32 ...........C................ TGAAATATCGCTGCCGTTTCGCACGGATAAGT 163377 28 96.4 32 ...........C................ ATCACCCCAACTATCCAGCCAACGCACTATCA 163317 28 96.4 32 ...........C................ TTTTCAATCGCCATGCGAGTGATTAATTCACA 163257 28 96.4 32 ...........C................ AAGCGCAACTCTCAAAGTTGTGCGGATGGGCT 163197 28 96.4 32 ...........C................ GCAGCAAGCGCGGCAAAATCCGAGGCCGCAAT 163137 28 92.9 32 ...........C.....T.......... AGAGAAGGTGAAAGCCATCGTTAACACCACAC 163077 28 96.4 32 ..........A................. AAGTCTGAGGCGATCAGTTCAGCCAGGACATA 163017 28 100.0 32 ............................ TTGATTTCGCCGCCGCTTGGCTACCGTCGAGG 162957 28 92.9 32 ...........C.C.............. TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 162897 28 100.0 32 ............................ AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 162837 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 162777 27 82.1 0 ............GC........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 20 28 96.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCAGGCCGCTTCTCTTCTTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCACCCTAATAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGTGTAAAAACTTAACG # Right flank : CTTATCAGAATGCGTCGCTAGCGCGACGCATATCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGGGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGATTTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172873-176683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRS010000025.1 Pectobacterium versatile strain CFBP6698 Pectobacterium_versatile_CFBP6698_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 172873 28 100.0 32 ............................ AGCATCACAATCCATCAAAACTGTGTTCAGCC 172933 28 100.0 32 ............................ ACCAATGGACAGCGTCGGATGTCTTTGCTCTT 172993 28 100.0 32 ............................ CTACCGTACGAACCTGCCGACCTTCCATGCAC 173053 28 100.0 32 ............................ GGAATAACAGTGAAGGAGTAGTGCGTGGAGCT 173113 28 100.0 32 ............................ CGCGACCATTGACGCCGCCGAACCTAAAATAA 173173 28 100.0 32 ............................ ATCAATCAGGCTGGGGAGCGATGAGTTAAATG 173233 28 100.0 32 ............................ AGCATCAACACCGCGCCCGTTGTCCAACCCTC 173293 28 100.0 32 ............................ AGGGAGTTGGCGAAAATCGGCAATAATGTCCG 173353 28 100.0 32 ............................ GATGACGGCTGCGACCACACCGCGCGGATCAT 173413 28 100.0 32 ............................ TCCATCACAATTTCTGAGGGGCGCCGGTAGGC 173473 28 100.0 32 ............................ AAGAAGCACGGCTATGCAGTAGTTGCACCATA 173533 28 100.0 32 ............................ GCAGAAGGCAGACTTAAATCAGGGCGCCTGGG 173593 28 100.0 32 ............................ AGTTCAGAAAGCACATTGATAACTTTTATCGC 173653 28 100.0 32 ............................ AGTAGGATGACAGCGGTAAATCTTCGCCAGCA 173713 28 100.0 32 ............................ TTGCCGCCTCAATCTCTCTGATTGCTTGTTTG 173773 28 100.0 32 ............................ TGTAGAGAACCCGGCGGGTGACTGACCGAACA 173833 28 100.0 32 ............................ GATATCGAGTGAGTTGATATAATCAGCAATCG 173893 28 100.0 32 ............................ ACCGCTTCAGGTGAGTTAATCAGCCAGGTATC 173953 28 100.0 32 ............................ GCATTCGTGGGGATAAACCTAGCAATCTGACT 174013 28 100.0 32 ............................ GCCGCTGGCACGCCGTGGATTCAGTCCGTGCT 174073 28 100.0 32 ............................ ATTCGCGCTGGGGAATGTTCATCATGCGGCTA 174133 28 100.0 32 ............................ GCGCCGCCCAGGCGGCGACAAAATCCCTTGCG 174193 28 100.0 32 ............................ GAACCAGGGATGCACAAGCTCACCTGGCCCGG 174253 28 100.0 32 ............................ GCTGTGCCAGGCGAATTGATTCGCGATGTCAC 174313 28 100.0 32 ............................ ACACTCGGACATATTCGTTACGTCATCAAGAA 174373 28 100.0 32 ............................ GGTACCGAACTGAGCAACATTCCACGCTACAG 174433 28 100.0 32 ............................ TCACCAGTAGATCGGAATGCTTGAGCCAAGCC 174493 28 100.0 32 ............................ AGTGTTTTGAAACGCTACCCCGCAAGTCGTCA 174553 28 100.0 32 ............................ TCCGAGGGCTGGCATCCCATGACTGATAATGC 174613 28 100.0 32 ............................ TGTTCCATCCGCTGGGTGGAAAGATGGTAGAC 174673 28 100.0 32 ............................ ATGAATTGCGCGATCACGCTGCTTTGCCTCTT 174733 28 100.0 32 ............................ TGACCAAGCCGAGCATTAACACTATAAAAACT 174793 28 100.0 32 ............................ TTATTAAACGATTTGAGGGATGTCGATTAACC 174853 28 100.0 35 ............................ GCCCGACAGGCGACAGCAGCACGCCTAACGCACTG 174916 28 100.0 32 ............................ ACGATCCTGCTGGCCGAGCCCGTCAATGAAAA 174976 28 100.0 32 ............................ CAATTCAATCTGAGTGAAAAATACAGCGTTTT 175036 28 100.0 32 ............................ TCTGGGTACAGTCGTGGCAGCGAAAAAGCACG 175096 28 100.0 32 ............................ ATGTTGAGACCCGTTTAAATGAGTGATTTGCC 175156 28 100.0 32 ............................ TGCTTCGTGTCGTAAACCCCCAGCACAGCTTC 175216 28 100.0 32 ............................ AATAACTTACTAAGGAGCCCAGCGATGAAAGA 175276 28 100.0 32 ............................ GACCTCACCGGAGGGTGATGATAAGCCAATAA 175336 28 100.0 32 ............................ AATCAGGGAATCCCTGCGCTGCGTATAGCTCA 175396 28 100.0 32 ............................ GCTCGATGTAGGAGTGGATACGTCACTAGTAG 175456 28 100.0 32 ............................ AGCGCCTCACCGAACCGTTTCCCCATACTGGC 175516 28 100.0 32 ............................ GCTGGAAGCAGGCAATGGAGGCGATTTCAGAG 175576 28 100.0 32 ............................ ATGGCGCCAGCCTGTGCTTTATCACATCTGCA 175636 28 100.0 32 ............................ GCCGCAGCCCAGCCATTCATCGTCACCGATGA 175696 28 100.0 32 ............................ AGTGCGCGAGTACAGAGTGCCGCCGCCGTCCT 175756 28 100.0 32 ............................ AGAGACTAAAAATTCATCGACCAGATTTTTAA 175816 28 100.0 32 ............................ AGCTCCTGAGATTCGGCGATACTGGTAAACGT 175876 28 100.0 32 ............................ TTCCACCAGCCGCCAGCCAGCCAGGTGAATTG 175936 28 100.0 32 ............................ GCGCAACGTTGCATTTAACTACATCGTAAGGG 175996 28 100.0 32 ............................ ACTAATTGAACGGCCAGATACGATATATTGAC 176056 28 96.4 32 ...............A............ ATAGAGCTGTTTGAACAAGCTCTGGATGATTG 176116 28 100.0 32 ............................ TGAACGGCATTGGGATCGCTGGATGATGACAT 176176 28 100.0 32 ............................ GTAACGTTTAACGGACGATAACAATGAAAACG 176236 28 100.0 32 ............................ TTAACACCGCTCAGCAAGTTTGGGTTGCCGTT 176296 28 100.0 32 ............................ TGTTTCAGCCATGCCACCAGCGCATTTTTTCC 176356 28 100.0 32 ............................ GGCGCGGGCGGGAGAAACGTTTGAAGCGTTTT 176416 28 100.0 32 ............................ TGGTTCAACAATCAGGATATGGACGGCGTACT 176476 28 100.0 32 ............................ AGTTCCCGTTCAACCTGACGCCGCAGTGCCTT 176536 28 92.9 32 ...........C.C.............. TTTCAGTGAAATTTCCAATTAAAACTCTCCCA 176596 28 89.3 32 .....T.......C.A............ ATGTGTTCGCTGGTGGCCTACTACATCAATGA 176656 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ =================================== ================== 64 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAGTGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATCTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCTGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //