Array 1 669710-668782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033077.1 Vibrio zhugei strain HBUAS61001 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 669709 28 100.0 32 ............................ ATAAATTGTCGTCCGGTCATCAATAGGAAATT 669649 28 100.0 32 ............................ TAATTTACTAGCGCCATCAATAATTTTATCAA 669589 28 100.0 32 ............................ GTTATTATCGGCATGTATCAATTTACGATCAC 669529 28 100.0 32 ............................ AACGCAGATAAAAAAGCGCGCAGAAAGCAAAT 669469 28 100.0 32 ............................ TATCTTTAGCTCCCCTCATATGTTCCTCTACC 669409 28 100.0 32 ............................ AGAACATTTAAAAGCAGTAATAGGCACACAAA 669349 28 100.0 32 ............................ CAAGAGCAATTTCCATTGCTAAACTTCTTCCG 669289 28 100.0 32 ............................ CTTAGCTGATTTCATTATCTTTTCACTGCGAG 669229 28 100.0 32 ............................ GTCTGCGCGTCTGCTGCCAGTGTTCATCAGGT 669169 28 100.0 32 ............................ GTTACGCAGGCACACGGTGCTGTATCGGTCTA 669109 28 100.0 32 ............................ AATGTCAGCGGCCAGAATGGGATTCAGGGCGA 669049 28 100.0 32 ............................ AAACTAACGATTTGTCTTTAGATTTAAATCCG 668989 28 100.0 32 ............................ TTACCGTAGGCATAAACGACCACCCCGATGAT 668929 28 100.0 32 ............................ GTGTTCTTGTCCGGTTCGGCAGAAGTTGAAAA 668869 28 100.0 32 ............................ GCAGACTCTGACATTGATGGAAGACTACCTCA 668809 28 89.3 0 .......................G.TC. | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCTACGTTGGCGCGGAGCACTTAAAAGAGCTCACCAAACGCACCACATTCATCCGTGTACAAGAGCAAGAAAACAACGTGTACGGAAAAGAATAACCTCGGATATATCGACGTATTAAAAGCCGCTGAACAGCGGCTTTTTTTATGTAAAAAATGACAAGTGACGGCACAAGGTTTTGTTATGGAAGGAGATTTTTCCATGGTTCAAAATATGGCAGAAGCTCAGCCAATCCTGTGGTGGATGTGATAACACAAAACGCTTTGGTACCTGTTTTTAGCGGTAGTTCTGCAGATACGTATAAAGTCACGTAACCATAGAAAGTCGGATTCAGCGCCCATGAACGGCTGCTTTTTACTTTCAGTCTGTCAAGACCCTTTATTTTTCCATATTTACAATAAATAATAAAAACAGTTACTTAAAAATAAGCTCAAAAAAAGGGTGAAATTAGGGTTTTACTGCTAAGGGCTTGGTAATACATCGCTTTGTGCTATATTGTTCTA # Right flank : GGATGGTTCCTTTGTGACGTTAGTAGAGCGTTGCTGGGGGTAATCGGCCGTGAGTGACTAAATGCTCCCCCGTTATTCAGTGGATAGCGGGGGAGTGGTAGATACTAGTTTTGCTTATAGGCCGCGTATTTGCATGCGGCGTAGAAATTCCGACATCACTCGATCATACAGCGCATCACCTAAAAACGCGTCTTCGACGTGGTGGTCGATGCTCGGGTTGTCGTTGACTTCTATGACGTATACCTTGCCATCGACTTCTTTTAAATCCACGCCGTACAAACCGTTGCCAATAAGGTTGGCCGCTTTTAGCGCCGTATCAACCACCATTTTTGGGGCCTGTTTGATATCCAAGGTTTCATAGCCCCCAGAAGACACTCGGCCACTATTGTGGTGTTGGTAAATTTGCCAATGTCCGCGGCTCATCATGTATTTGCAGGCATAAATCGGTTGGCGGTTCAAGATGCCGATTCGCCAGTCATAGTCCGTGGGCATGAACGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 958396-958544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033077.1 Vibrio zhugei strain HBUAS61001 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 958396 28 100.0 32 ............................ GTGTTTTGTAAAAGGGTGATGAACATGAAAAT 958456 28 100.0 33 ............................ AAAATAGTGTTTCGAAAGACTCATTTGTCATAT 958517 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTTCCGCACCCTAAATCTAAAATGGTCTCATTGGCTTTTGGAGCCAGTAAGTCAATGACTGAGCGTCCAAATTCAGACACAAACTGAGCATCTTTTTGGTATTGATTGGCATTCCATTGTTGTGTAGACATTACTTCTCCTTAGTGAGCATGCTGACTTTGGCCGCCTAGCGATTGTACGTGCGGTCTGAATAGAAGATAACCAATCGCTTCTTAGATGTCACCCCATAACGATATAATTTATTGAAAATAATGGCTTATTTCTACGCAAGAGTCTGCTTAATGCTCTTCTCGCTCTACGCCGACGTCATTGCCATAGATAGACTATTGCTATGCGACTGGTCTAGAGTGGTTTTATAAGGGCGTCATAGACCCTTTATTTTTCTTATTTGCAATCATCAATAAAAACAAAGAGTTAAAAATACGCCACTGAAAAGGGTCAAATTAGGGGGTGAGTGCTAAGCGCTTGGTATTACGCCGCTTTGTGCTATATTGTTCTA # Right flank : ATTCTTCAATCTTTAATCGTTCCAGCGTTGATTATTCATTCATTGAAGGAGAACGACCATGCCTAAAACTTATCTTGCTTTACTGCTGGCGCTATGCATGATGAATTTTACGCGTTATCAGAAGGAGAGAGCGTAATGTCATACAGTCTTGGGGTGTTAGCTGGTATGGGGCCTCGCTCCACAGCGCCTTTTATCGATATGTTGGTGGATGAGTGCCAAAAGCAATACGGAGCCAAATTCGATATCGACTATCCCAAAATGCACATCATTTCCTTGCCGACACCTTTTTTCCCTGATCGGGTGGTTGAAGATGCTGCAATGTCAGCAGCACTGCGCGATGGGATTAGCGATTTGGTAAAAGCAGGGGTTAATTTGATCGCAGTTCCCTGTAATCTGGCCCATTGTTACTTCGCTGAGATGCTGGAAGCCAGTGCTGGCATTCCTGTCCTGCATATTGCCGATTGTGCGCTTGAACACTTGCCTGATGAAGCGGAGAACAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1273074-1274965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1273074 28 100.0 32 ............................ GTCTGTGACCACTTTATCACTGTGACCACTTT 1273134 28 100.0 32 ............................ TGATGATTTCAGCGTGCAGCCTAAAACACCTG 1273194 28 100.0 32 ............................ ACGTAGTCTCTGGGATGAGAATTGGAGGCCAT 1273254 28 100.0 32 ............................ TCTGGCACCGATGGTTTTTCTTCTTGCTTCCC 1273314 28 100.0 32 ............................ TATGAGCGCACAGATAAATGATGATTGCTCTG 1273374 28 100.0 32 ............................ TTGAAGAGTTTAAAGATAACAACGAGTTAATA 1273434 28 100.0 32 ............................ GAAAACCAGTGACCGCACGCAGTTCCAGGAAC 1273494 28 100.0 32 ............................ GGAATGGGACTCCATATCACCAGCCCGGCCGG 1273554 28 100.0 32 ............................ AGCAGGAAAAGAAACAACAAGATGATAAGTCT 1273614 28 100.0 32 ............................ CAGAGGCTCAGGCGGCTTTGGAAGTACAAACA 1273674 28 100.0 33 ............................ GTTTGACGCATTGTCCTAAAGGATTTTCTCTTT 1273735 28 100.0 32 ............................ ATTATTGAAATTAGCTTTATTTACGCCAAAGC 1273795 28 100.0 32 ............................ ATGTAGACCATGAAGTATCATTCGCACCGTTT 1273855 28 100.0 32 ............................ ATACGCGCCATTCGGAAGCCATTTATCCAACC 1273915 28 100.0 32 ............................ ATTGGATATGTTTGTTGTCCAAAAGATTACGC 1273975 28 100.0 32 ............................ ATTACGAACACATCGACACAATCTTGTGCGAA 1274035 28 100.0 32 ............................ ATGTATGCGTTCGATACATCGTACTCAATCAA 1274095 28 100.0 32 ............................ AGAACTATTACTATCTTGCTTGTTTTGCTTAA 1274155 28 100.0 32 ............................ CGTAGGGGCTGTGATATTTTGAACCGCTTGTT 1274215 28 100.0 32 ............................ CATGGCCGTGAACTCGTCCGGCAGCAACAGGC 1274275 28 100.0 32 ............................ CTTCCCGCCTGGACCGCGACCTGTCCGGTGGA 1274335 28 100.0 32 ............................ ATCCAGAAAGCGAGAGATTTCCGCGCCTATCG 1274395 28 100.0 32 ............................ GCGAAATTAAAGAAGCGGTAACCGAAATCAAC 1274455 28 100.0 32 ............................ GAGAAATGGGGCAACAGAACTTTCTTCAGCAA 1274515 28 100.0 32 ............................ TTACTGTAATAGAATATTTGATGTCATTAGGC 1274575 28 100.0 32 ............................ TCGGACGTCGCCGCGTTGGCTTCGCTTGTTTC 1274635 28 100.0 33 ............................ TGTCCGATTTTCCGTGACATATCGCACAATTCG 1274696 28 96.4 32 ................A........... AGTCAGTCGCTCGCAAGTTAAGAGCGTCATTC 1274756 28 100.0 32 ............................ AATTCATAATCGATTTTCATCTTTCTCTCCAA 1274816 28 100.0 34 ............................ AGGTAAGGCTCGCGCTTTTGCTTGCTGATTGTTG 1274878 28 85.7 32 T........T.T........T....... TGGAAGCCAGCCTGGTCGTAACGACTGACCGC 1274938 27 89.3 0 ........A..T............-... | A [1274960] ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATTATTGCCAATGCCCCACACCCAAGTCAGCAAAAAAGCGCCCCAGTTCCAACCTTGTATTTCACTCGGGATATCGGCATATTTGCCTTGACCTGACGTATTATTTTCCATTTCAATCCTCGTTTTTATTGTCGTATTGCTTATTTTTACTCGCCAACCACGTATCGTGGGTTTTGCCGCGCAGATTATAGAGACAAGTCATAGTAAGTGTAATTAGGCCGCCATGTTTTGTTGGTTCTTTAGATACAGATCTAAAACTGCATGATGAGGGGTTGAAGACGATACCATCGCTCGGCTATGGACATACAGTGGAGTTCGACACGGTGAGATAAACCGCGCCTTCTTTGACCCTTTTATTTTATCGGTAGACCCTTTTTTTTGGCCTTTATAAAAAATCATTTAAAAACAGATAGTTAAACTTTGGTCAAAATAAAAGGGTAAAAAAGGGTTTTTCTGGCTAATCTGTTGCTATTTCGTCGTTTTTTGTTATATTTTTCTA # Right flank : ATGTAACTGAAATCGGCGTCGCTTTATTCCAAAGGATGTGCTTCATGTCAATGTCTATTTTCGTCGTCTGCGAATTTTGTTTAGCGCAGCATTTTATTCGAATCAGCTTGGTTAGTTCTAGACTAAATAGCCTTTTGTGAAGAAGACATTGGAGCTAGCAGCGATGATTTGAAAGAATAAAGGAGCAATAAATGCAAAAAGAAACGTCTCTCCGGCCTTAATTATCACGGAATAATTTTTATCGCTTTTGCGATAAAAACAAGAAAGCTAACGCTTAAAAAGCTCCAAAACCCTAAAGTATTTATCCACATGAAGACTCTGAATTTGGTCGAGGTTGTCGTTATACGGTGAGAAATAAACGGATAAGTTAAACAATAGCGCATAAATCGAGACGTAATGCTGTAAGGCATCATGCTTTGATCGTTGGAATGTAATTTCTTTGCATCTTTGGATAGTTGATTATCAATCCAAATCATGCGCTTTGAATTACCCAAAGCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1290198-1290887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1290198 28 100.0 32 ............................ ATTTTACGGTGCTAATAATGGTAAATACGCCA 1290258 28 100.0 32 ............................ TGGATAGAGAAGCGGAACGAGACAAGGGGGAA 1290318 28 100.0 32 ............................ CCTTTGTCGGCCACGTGGCAACCATTAATTCC 1290378 28 100.0 32 ............................ TGTCAGATTAGATGCTCCACATTTGCATTTTG 1290438 28 100.0 32 ............................ ACAACAACCAATGTCAGCGGCCAGAATGGGAT 1290498 28 100.0 32 ............................ GATTAAATACGCCATGTGTTCGTTTCCAGTTT 1290558 28 100.0 32 ............................ TCCGCAAGCTTATAAATCTAACGGAATGCAAT 1290618 28 92.9 32 C.A......................... TATCGTCATTTCAGCGTCAGCCCCCAGTATTC 1290678 28 92.9 32 C.A......................... GCTTGCCGCTTCCTTATATTTGATACGCTCAA 1290738 28 92.9 32 C.A......................... TTTCATTTCAAATTCCGTTGCAGGTTCTAGAG 1290798 28 92.9 34 C.A......................... AAAGCGATGCATCAAGTCCTTGCAATTCAGTTTC 1290860 28 78.6 0 ......T...........A....TTT.T | ========== ====== ====== ====== ============================ ================================== ================== 12 28 95.8 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : CACAGTTAGAAGCGCTACCGTGGCGTAAAGGGCTAGGGGATTTTACGGCCGTTTCAGCGATTGCGGCGGCTCCCGATGTCAATGATTATTGGCAGGTGCAAAGGGTGCATGTACAAAGTAGTCCTGAGCGTTTACGTCGCCGCGCGATGAAACGCCATGGATTAACCTATGACCAAGCTGTCGCGCAGCTTCCTGATAGCGTAGCTGAAAGCTCGGAATTGCCTTTTGTACGTATTAAAAGCCAATCGACGGGAAGACGACAGTTTCCTTTATTTATAAAGCAAACCGTTGTCTCTGAGCCGAATCACTCAGATATTGGCTTTTCTAAATACGGCTTAAGCGCAACGACAGTGGTACCTAAGTTTTAACCCTTTTTTTTCTGACCACTCACCAAGCCCGCTATGACGGGCTTTGTGATACTCAGCGAAAAAAAAAGGGTGTTTTACCTAGAAAGACTTAAAGCTCTTTTAAAATCAGCAATATATTGGTAATTTCATCTA # Right flank : TTGATGGTTTCCAGAAAATAATACGTCGCTGTAAAGTGCGCCAATCTCGCTCCCTCCCCCTTGGGGAGGGCTGTGGAGGGACTCTCCGCGCGATCTCTGGTGGAGTGGTATGTCTGTTTGGCGTAGTTACGTGATGAGGCTGCGTGGCATGATTGGCCGCCAACCACCTTGGTCAAGTTGACCACAACTATAACGCGCCCTTCGCTTAAGCAAGTTTTTGCCTCGCTATTTTTGGGGGTATGATTGACTTATGTGCACATCATTGAGAAAACATAATGGCTTTTTACGACATCTTTGATAAAGAAACTTTGTATCAGTGCCCAATAGGATACAACCCTGAAACGTGCAGCTGTGCATCTTGTGTGATGACGAGAGAATGGCATGAAAGCGACGCGCAGTTACAAAAGGTAATAAAACAAAATGTTGCCTCCACTGGTGCGAGCATTACGAGTATTCATACGCCGCCCTCGTCAGAGCCGGTTAGAGCCTCGGTAAAAGAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : TACACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1293085-1293832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1293085 28 100.0 32 ............................ ACCATATTTTCTGGAATAGTATCGGTATCCCA 1293145 28 100.0 32 ............................ TTGCTGTTGATATTGAGGCTGACCTTGTTGTT 1293205 28 100.0 32 ............................ TGAACAGCGAACGAGAATACAAATTCTCAGAT 1293265 28 100.0 32 ............................ TGGTGTTAGATTGCTACAATGTAAAAGGTTTT 1293325 28 100.0 32 ............................ TTGCCCAGACATGGCAGGGTGTGAGAACCCAG 1293385 28 100.0 32 ............................ GTTTTTCCAGCCATCAAAAAAGCAGAATAAAT 1293445 28 100.0 32 ............................ AGAATAGGGCTTCAATATTGATGCTCTCTCTG 1293505 28 100.0 32 ............................ TGTCCCGATATGGCAGGGTGTAAGAATCCAGA 1293565 28 100.0 32 ............................ ATTCCAAGAAATAACAGGAATGGTGAATGGAG 1293625 28 100.0 32 ............................ CGTCGCAAAATAAAAACTCTCTACTTAAAGAT 1293685 28 100.0 32 ............................ ATATCGGTAAGTAGGCTTTAAGTAATCCGCCA 1293745 28 100.0 32 ............................ GCGCCGCCAATCGCCATGTTTACGCCAGATAG 1293805 28 96.4 0 .........T.................. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAACTTCGCCATCAAACGCTGGGCGGTTAAGGAGTAGATAGGCTGTTTTTTTGTGGTATTGTACCAGTCCATCGCCGCACAGGCGGCGTTTAATTGATATTTTTCAGTAAATAGTACGTCGCGGTTGCATAGTGCACAATCTGAATCTGAATCCGAATCCGGCTCCCTCCCCCTTGGGGAGGGCTGGGGAGGGGACTCTCCGCGCGCTCTCTGGTGGCGTGGCATGTTTGCTTGGCGTGATTGGCCGCCAATCACCTCAGTCAATTTGAATGGTCTGGAACACGCTGAGCGGGCGCTATCACCATAGCGACCTTGGTGCTGTGCGCCCCCCTCTAATTCCCCCAGAGGGGGGAGGATGGGTTAGTGCTAGACCCTTTATTTTCTCGATTTTTTAATGCCAATAAAAACAATAAGTTATAAATCGCTCTCAAAAGAGGGGTAAAAAGGGTTTTTCTGGCTAATCCTTTGCTATCCGGTCTCTTTCTGTTATAACAGTCTA # Right flank : AGTTAACTGCTCAACAACAAGCGCGCTGGCGGATCCCCTCATAATTCCCCCAACCCACAGGTATGCGTAAGGCGTTGATATTCGACCATTGCCCAATGATATTGGGACTCTTGTATTCGGTATCTTCGGTGGCAACGTACTTCCTTACCAAGTCTAGGAATGGAGAGCACACGGCGATGCTTGATGGTGTTGGCTTGGAAGTCATAATGCCATTTGGCTTGCATGGCGATTAAGCCATTCCACCACATGATGATTTCGGCCATCAATGCCATGAGCAACAAGATATCAATACGTTTGGTGCAACGTGTTCGGTTATGGCGAAGCGCCAACCCGTAGGCTGGACTTTTTAGATCTCGGAACGACTCTTCAATTTGCATTCTTTTGGCGTACAAACGGGTAATTTTAATGCCGTTAAGTACATGGTTGGGGATGTTAGTGACCAGAAGCCAAGGCTCTTTCGCTCCTTTATGGAACACTTTTCCAGCCGAGTGTTTCTGACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1295208-1295475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1295208 28 100.0 32 ............................ GTTAAAACTTGAGATGTAGGATTTACCCCATT 1295268 28 100.0 32 ............................ GCAGAAATTAGAAGCTTAAGAGCAGAATTTAG 1295328 28 100.0 32 ............................ AATAGCGCCTCTGAACGGAGAGTTTACTATAA 1295388 28 100.0 32 ............................ ACCCCCATGACCGCAGGCACTCACCCATCTAA 1295448 28 78.6 0 .....................GGC.TGC | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGGCGCGACCTTTAACGGATATCGAAGCTCGCAATGTCATATAGCGCAGTTGCTCACGAACATCCGACCAATCAACCAGTAGTACAGGAAAAGGATTGGCTCGGGTAATAAGGGACGCATGCCATTTATATATGGACTCTTTTTCACGATGTAGACTGCGATTACCAAGCAATCGGTCAATACGTTTGATGGCATGTTTCACCGTGGTATCAGTGTCGAGAGCTCGTCCAATTTTAGTGAGGGTGAGATCAGAGCCGCCCAGTACCGCTCTGGTTGCAAGCATAAGAGATCTAAGTCGTTTTTTGTGAATACCAGGGCATTGGTTTTCAAGAGTTTGCTGTAGAATTTGAACATCGCGCATCGTTAGGGCTCCCTATTAAATTCATTGAATCAAGTGTGTTTTTGGCGAAATTCATTAGATCAGAATGAGCGATGTGCGTCTACTCATTGTTTTATATAGAAATTATGAGGGGATTCGTAAGACAAGCGCGTTAAATAC # Right flank : CTCACGGCTTAGTGATATTCGGTCATAAAATTTGATCCATGTATAAGATTTTGTTAATAAAAATGATGTTTGCTTTAAATAATGGCTAACTAGAGGTTCCACAATATACGCCGCTAAAAAACGAGCGTTATAAACTACGAAAAGGTGTCGATAAGAACTAGGATGTCCTATGGATTATTTTTTTGAAATTAAGGTGATGGCGGATCCGGAGTTTTCGGCACCCGTGCTAATGAATGCATTGTTTAGTAAATTACATCGAGCGTTGGTGAGTGTGTCTCAAGGTGATATTGCGGTTAGTTTTCCGTTGCTAAATGCACGCAATTTAGGTCAAATTTTACGTATCCATGGAAGCCTTGCGGCATTGACCAAGCTAGAAGCCCTATCATGGCGAAAAGGTCTGAGTGATTACACGCAGGCCAGCGATATTCAACCCATCCCCGCTACTGACCAGCATTGTTTGGTATCACGAGTTCATGCCAAAAACAATATAGACAATTTAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1303966-1305133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1303966 29 100.0 31 ............................. ATACTAGTTACCCTCTACATCGAGACGGTGC 1304026 29 100.0 31 ............................. ACGAAAATCAGCATGTGGCCCGGCTCGGTGA 1304086 29 96.6 31 ............................G GGAAGCAGTTGCGCCTGGATGCCGACAAGGA 1304146 29 96.6 31 ............................A GCCCGGCCGGATTCGCGCTCGACCTCCTTGT 1304206 29 96.6 31 ............................T GGTGCAGCTCTTCCCAGGTCTTAGCTGTCTT 1304266 29 96.6 31 ............................G ATACCAACTACCATATTTTCTGGAATAGTAT 1304326 29 96.6 31 ............................G ACAAGGGCGATTTACTCGTGCTGCTGATGGT 1304386 29 96.6 31 ............................A TTTGCGCGAAGGGCGACGCGGCACATTTCGA 1304446 29 100.0 31 ............................. ACTCCGGCCAACGGCACGCCAATCCAATACT 1304506 29 96.6 31 ............................A TATTCGACAAAGGTTATTGCAGATCGAATGC 1304566 29 96.6 31 ............................G AAATAAGTTGTTAGCTGCTCCCGAATAATAT 1304626 29 93.1 31 ..............G.............G CCAACCTCTTGACCAGCGTATCTCACTGATG 1304686 29 96.6 31 ............................T GGTGCTGCTTCTCTACGGCCTTACGGTCGCG 1304746 29 96.6 30 ............................T TGACCGGGCGTTAAATTCAATTTCCCTTAG 1304805 29 96.6 31 ............................A AAGTCAAGCTAAATTTGTATTAAAGCTAAAC 1304865 29 100.0 31 ............................. AGGGTCGGCGGGGTGTCGATAACGCAGTAAT 1304925 29 96.6 31 ............................A TTTATATTAATGCAGTTACAAAACTCTTGGT 1304985 29 100.0 31 ............................. ATAAACCGTTTTATGTGTAAGGTTAAGTTTT 1305045 29 86.2 31 ......T....C.C....A.......... CCGACCTCTAGGTTATGAGCCTTGCGAGATA 1305105 29 72.4 0 ......T....AG.....A....G.TG.G | ========== ====== ====== ====== ============================= =============================== ================== 20 29 95.5 31 GTTCACCGCCGTATAGGCGGCTTAGAAAC # Left flank : GATAATAAAGTGACCTGTCCGGCCATACCAAGAAAAAACTTTTGCCGTAGCGAAGTACTTGCTTATATACAAATGGTCAGTAAAAACAAGTGCACTGAGACACAAGGTTTTGATATCGCCAGTCTTAAAACCCCAAAATTTGGCAAAGACCTATTGAAAGTGACGAAAACCAAAGGCCAGCAAAAATTTATCGTTGATTGTACTGATAAAGAAATGGAGCAATTTGATGATTGTTGCATGAAAGAGAAGTAGCCGCATAGGTTGCTTCTGAGCATAGCTGTGGTTCTATATAGATTTCCCCACGAGAAACAATGTACTCGGTGCATCATGCAAGCAAAGGGGAGGCGGTGATTTTGATATCAACCATCTGACCCTTTATTTTTCGCTGTTTTAACCCATTAATAAAAACAATAACTTAGAAGTGGCTCTGAAAAAAGGGTAAAAAGAGGGTATTTGAGTTAAGTCCTTGGTCTTACGTTGCTTTGTGCTATATTGGTCTA # Right flank : GAGATGAGAAAAGGAGCGGGTGGGGTTATATTGGTTTGGTTTGCTCTAAAACAGTGAAACCCCGATGTTGGTAGCATCGGGGTTTCGAATTTTCTGTGATATCTCGGGTGGTAAAACCGAACATCAACTATATGCAAAAGGCTGGAGGTAATCCGAAGAATTCCTGGTAAGGGAATTAGATACGGATGAAGTCCATGTGTTCAACTTTTGGCTTGAACGCGTGACGTTGAACGTCTTGAGGCTTAACCTTCACTTCTTTACCGTCAATCACAAGAGTGATTGCTTCGTAGAATTCAGGCTTGTCCATTTGGTTAAGAACGTCATCGTGGTTCAAAACGATTGATACAGGCGCTTCTTCACCACCGTATACGATAGCAGGGAAGTTGCCAGCGAGACGTAGGCGGCGGCTCGCACCTTTACCTAGCTCAGTACGTACTACTGCTTCAAATTTCATAGTATTTACTCTCAAAATAGTAAAAAAACATCACGTGTGCATGCGA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGCTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 1840937-1838996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033078.1 Vibrio zhugei strain HBUAS61001 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1840936 32 100.0 33 ................................ ATTTTTGGCCAATTCAATTTTCATTGCAGCAAA 1840871 32 100.0 34 ................................ ATTTTCACGGCCTAGCATCGTAGCGATGCAGGGA 1840805 32 100.0 34 ................................ TCGTGTCATACATCCAATCTCACAGCATAAAACT 1840739 32 100.0 35 ................................ CAAAATGCTGAATCGCACCAAGCTGCGCCATTGTT 1840672 32 100.0 33 ................................ TTTATCTGCAATTCAGTGATAAACTAGCCCTAT 1840607 32 100.0 34 ................................ AAGAAGATTTAATTAATAAGCTCGCAAATAACAC 1840541 32 100.0 35 ................................ CAAAATGCTGAATCGCACCAAGCTGCGCCATTGTT 1840474 32 100.0 33 ................................ TTTATCTGCAATTCAGTGATAAACTAGCCCTAT 1840409 32 100.0 33 ................................ CCGCCACTGTTAGAGGAACAGCGCCAACACGCG 1840344 32 100.0 34 ................................ TGGTTTAAAGTGAAGTCTCTTTAACTCGTGCAAC 1840278 32 100.0 36 ................................ ATGCATTGGCGCTTTAACATTTCTTCGTGTGGGTAT 1840210 32 100.0 34 ................................ GATCAATTCTTTGAATGACATTCCGCACGGTGTG 1840144 32 100.0 33 ................................ ATCATTACCGCGTCTGCACAGTTTGGCGATGCC 1840079 32 100.0 33 ................................ TAGCTCTTGCTGAAACCTCCTCCGCATCTCTAT 1840014 32 100.0 35 ................................ TTAGTCTGGCGTCGATGTTATCCCATGCAAGGTTT 1839947 32 100.0 34 ................................ TTGTCAACTTGCCATGAATATAAACTTTCATAAA 1839881 32 100.0 34 ................................ ATCCCAAAAACTGATTGCCTAACTATTGGATCTT 1839815 32 100.0 32 ................................ CTTATCAAATACTGGTTGGATATCACCAACTT 1839751 32 100.0 35 ................................ TTGAAAGTGAAGTTAAGCGCAATCAAGAAAAAGGA 1839684 32 100.0 33 ................................ GTTTGCAGCTTGTTGCCTGTGTCCATTGTGAAC 1839619 32 100.0 33 ................................ ATCTTCTATCTGCTGCTGTGTTTTTACATTAGC 1839554 32 100.0 35 ................................ TTGTCCAGAGTCGCAAGCGATGCCAAGTTTTTCAA 1839487 32 100.0 34 ................................ TTGATTATGGATTGGAAGGTTACGGTCTTTACTG 1839421 32 100.0 34 ................................ AGGATTATTGAATATTGCATTTATGTTGGTTTCT 1839355 32 100.0 33 ................................ ATCCCTAACTCTTCGCAAACTAAAGTAAAATTA 1839290 32 100.0 34 ................................ TATCAATCAAGTTAGGTCTATACACCCAATAATG 1839224 32 100.0 34 ................................ CCTCGTATTCGTCCGAGTTAACAGCCCAACTTAA 1839158 32 100.0 33 ................................ ATGGTGGATATAGGTCGTCACACTGGAGCTCTT 1839093 32 100.0 34 ................................ ATGAATGGCATAATCCAGTACGGATCTATTTGAG 1839027 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTCGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTTGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTGATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAACACTGGGGATCTAGCGATTACATAAGCTCTTTAAAAATATAGGAAATAATTATTTGTATAGATTCACACAAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACAATGATATGTGTTAGTTTATACGTGCCTTCCACAGTAGGCA # Right flank : CTTCCATACGCCGATATTATGCAGCTCAATAAGGTGTTTATTGGTTTGTTGAACAGACAGATAAACTTCCCTTAGAAGCCTCCTCGATATAGTTACTCCACCAGCGTAGCATTTCTCGACGTTGATTAAGATATAAAGCCCGGTTGTAAATACCTCGAATCTGGTTTTTGTCCACGTGAGCTAGTGCTAGTTCAATGACATCATTATGAAAGAGTTTAGTTTCATTTAGCGTAGTGCTAGCTAGAGCTCTTAGACCATGGGAAACCAAACGGTCTTTAAAGCCCATACGTTTAAGGGCGATGTTAGCAGTTTGGCTGTTACTCGGCCTCATCGGGTCTTTATAGGAAGCGAATATGTATTCGCTTCCACCATTTATTTTTTTCATCTCATTCAACAGATTTAAAGTCTGCGGCGTTAGAGGCACTAGGTGATCCCTTCGTTTTTTCATTCTATCTGCTGGAATAACCCATAGATTTTCATCCCAATCAATTTCACCCCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //