Array 1 323366-326039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAUJ01000008.1 Streptococcus oralis subsp. dentisani 7746 strain CECT 7746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 323366 36 100.0 30 .................................... AGACAAGACAATCAGTGTTTCAACTGCAGA 323432 36 100.0 30 .................................... TCGCTCGCTTGAATGGGCAGGTCGAAAGTA 323498 36 100.0 30 .................................... AAACAATCTATAGTTTAGAATTTAATCATA 323564 36 100.0 30 .................................... CGCTAGCTCTGAATATAGCTCAGTACATCG 323630 36 100.0 30 .................................... ATGTTTCAAGCTAGTTCAGAAAAGTTTTTC 323696 36 100.0 30 .................................... CGCCATCCTTACCAGCGACACCATCTCTAC 323762 36 100.0 30 .................................... GTGCTGATTGCGTTTATGTTTGCGATGCAG 323828 36 100.0 30 .................................... TGTTGCTTGCAAATGCCTTTAACATGGACA 323894 36 100.0 30 .................................... AATTGACGTCATTATTAAAGCCGAACAGTT 323960 36 100.0 30 .................................... TTTGGAGTGGTTCTGGTGCTGTTATGGCAA 324026 36 100.0 30 .................................... TAAAACAATTTTAATACCTGATTTGAATTT 324092 36 100.0 30 .................................... GTATACCAACCTCAGTACCTACCTAGGACA 324158 36 100.0 30 .................................... CTTGATATCGATATTGTTTCGTTTCAGTGT 324224 36 100.0 30 .................................... CTTGACTATGAAGACCATGCAAGCGACGAC 324290 36 100.0 30 .................................... ACCAGCGTAAGCCAGTTGCCTTCCTCATTT 324356 36 100.0 30 .................................... TATTCCCGTAAATGTCATATAATTCAATTT 324422 36 100.0 29 .................................... TTTCACCAGCACCAACATCTCTAAACCAC 324487 36 100.0 30 .................................... TAGCAGGGCCATTACCAAGTTTGTTGTTTA 324553 36 100.0 30 .................................... CTTTTTTAGTTGTTTCACGGAATTCGATTT 324619 36 100.0 30 .................................... TTATCGCGTCCAGAAATAACTGTATCTTCA 324685 36 100.0 30 .................................... CTGAACTTATCCAACAGCAACAAGAAATTC 324751 36 100.0 30 .................................... AAATCCACAACCAATCATTTTAAATATTGA 324817 36 100.0 30 .................................... AGAGGACTTCAAAAAGGGCGCCGAACTTTG 324883 36 100.0 30 .................................... TTGATTGCGATTTCAAAGCGTTGTTTTCGT 324949 36 100.0 30 .................................... ACTCTTCAAGAAATCTATGTGCACCCAGCT 325015 36 100.0 30 .................................... TATTTCCCTAGCATGGACGGAATACGTTGG 325081 36 100.0 30 .................................... TTTGCCAGTTATTGTGATACCATTCAATGA 325147 36 100.0 30 .................................... CCACATCAACGGTGACGGACTTGACCACCA 325213 36 100.0 30 .................................... TAGGTCCTCGCATACCAAATATTCTGAATC 325279 36 100.0 30 .................................... CTAAGGTCAAAGGCTTTGTAGATAAACGCA 325345 36 100.0 30 .................................... CTGTCCGTGCTATGCTAAAGCTAAGAGCAG 325411 36 100.0 29 .................................... TTTTTATTTTGATTTAAAAATTAGTAGGA 325476 36 100.0 30 .................................... TACACTGATAGGCGGATGGGCTAGAGTGCA 325542 36 100.0 30 .................................... AGATAAAATATAACAAAGTGGACATCTCCA 325608 36 100.0 30 .................................... TTGCTCTGTGCGACCAAACTGAGGATATTT 325674 36 100.0 30 .................................... TTCTTAAAACGTAGTATACTCTTATCATCT 325740 36 100.0 30 .................................... AATCTTCACAGTAGAGTCATACTTGTCTTG 325806 36 100.0 30 .................................... AGCCTCACCTTCATTGTATATTAGACCTTG 325872 36 100.0 30 .................................... AAATTCCAAGCTTTTGAGCTAATTCTTTCT 325938 36 100.0 30 .................................... CGTTTGCAACATCCAAAATATCTCTAGAAC 326004 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTCTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : CTGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTGCTGAGCGGTTTTCGTCTATTCTTACCTTTTGCTACAATACCCACGTACGGATGGCATGGGCGACGCCAGATTCGTCATTTGTTTTAGTGATGTATTTGGCAATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACTGGGTTACCAACGACTTCGAGCATGGTGCGGTCATTTTCTTCGTCACCGATCGCCATGGTTTCATCTTTGGTTAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGCTCAAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCGCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGCCATCCATTTCTTCAGGAGTGCGGTAAAAGATAGGCATGTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 479372-481727 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAUJ01000008.1 Streptococcus oralis subsp. dentisani 7746 strain CECT 7746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 479372 29 96.6 46 ...C......................... TTTTCCTTAACGTAAGCCTTATGGTATTCAACTTCCAGCTGTTTTT 479447 29 96.6 37 ...C......................... AGAAGGACTGTATGAATTGGTATCTTCATATTTAAGT 479513 29 100.0 48 ............................. TTAAAGCGTTGCATTTTCTTGATTTCTGGAAGGTTATCAATCTTCAGA 479590 29 93.1 42 ...C...........A............. TCTCCCCTTTTGACAGACAGGATATAGGAAACCGTATATTTC 479661 29 96.6 38 ...C......................... GTTTTAACTTTCGAAAAGTGCTAATCGTTAAAAAATCA 479728 29 100.0 38 ............................. GCTTATAAGGCAATCGATATTTCATTAGCTCATCCCGG 479795 29 100.0 52 ............................. ATACCATCAGCTGAGTCGCCACGGAGAATCTTGTAAAGCAACAAGGTATTAT 479876 29 100.0 52 ............................. GTTTAGAACCCCAATATACATAGGTGCTATTTCTCTACTATGCTCATCTAAA 479957 29 100.0 51 ............................. GCTTGACCCCAGAGACCGTTGGTTTCTGCGTCAAAGCTAAATAGTTTGATT 480037 29 100.0 44 ............................. AATATTTGGTATTTTACCAGCTCTTCCCGGAAGAAACTCCATGG 480110 29 100.0 46 ............................. AATAAATCTTTCGCGGTCATACAAACCACCTCCAAAAAATATTTTT 480185 29 96.6 43 ...C......................... AAGGAACTATCCTTCTCACCAGTTTTAGGTAGTCCTTTTTCTG 480257 29 96.6 51 ...C......................... ATAACGTCATAAGACAATGTAAGGTCTGTTTCAGCCGTATATTCTGTTCCT 480337 29 96.6 48 ...C......................... ATTCCAATCTCATCACCCAGACATTCAATTAAAACATAAATTTCTCTA 480414 29 96.6 46 ...C......................... TTAAATTTCTCCTTCTCAGCACGTTGTGGGAAATTCTCTTGATAAA 480489 29 100.0 39 ............................. TTTACTGTTAAATATCTTAATTTAGCATTTTCTCCTTTT 480557 29 96.6 34 ...C......................... AGGTGATTCGTTAGCAGCAGTGATACCGTTCCAA Deletion [480620] 480620 29 100.0 42 ............................. TCTCCCCTTTTGACAGACAGGATATAGGAAACCGTATATTTC 480691 29 96.6 49 ...C......................... ATTGTCTTTAAATCGACAAAATATCCTTTGGAAATATTCAGACTGTCAA 480769 29 100.0 44 ............................. CTAATCGCAAAGCTAATAGCTCCTGGAACAGCAATTACAAGATT 480842 29 96.6 43 ...G......................... TTTTGGCCGTGACCAAATTTCATTTTCGCCGATTTTGCGATAA 480914 29 100.0 46 ............................. AGATATCCAGATTTTAAATCAAATCTATCAACTTGTGAATGTTCTT 480989 29 96.6 47 ...C......................... CTATTAGGATATCATGAATTCTTGCTAAAAACGATGGCTCTTCATCT 481065 29 100.0 40 ............................. GAATACGTTCTTTTTTCGAAATTTCATCTTGAATTTTATA 481134 29 100.0 47 ............................. TCTTTGATGATTGGACGGATCTTATCTTCTTTGATCTTGTTCTTGTC 481210 29 100.0 46 ............................. TTCCATTTGTGGAATAACTTTCTCAGCCACCCAAGGGTTTACTTCC 481285 29 93.1 32 ...........................TT GCTCACTCTCTGTCTCCTTTGTGATATAATAG Deletion [481346] 481346 29 93.1 40 ..A..............G........... GTTAGAGTCCCAAGATATTTACTAGCACCTTCTCGGAATA 481415 29 96.6 42 ..A.......................... TCTGTTTCTGAAAGAAAGTTGCCTGCCTTTAATGAGTCATCT 481486 29 93.1 42 ..A....................G..... TTTTTTCTGATAAATTCCAATGAGTGTAAATAGCAATACTAC 481557 29 93.1 42 ..A........................G. CGTCAATTCTGATTTGACTGCAATTCGTTCTTCCATTGGAAC 481628 29 96.6 42 ..A.......................... TTTATTTAGAATACCTTGAAGATATTCTAGCTCCTCTTGATC 481699 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ==================================================== ================== 33 29 97.2 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TAGTGATATAATCAAGAATCCTATTCCAATCAATTGTCTGAAAGTTAAACCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAAAGATTGTCAGCTTTCAGACGGAGTTAAGAAGGTTACGGTTGAACAAAAAATAGAGTTATTTAAAAGCATCTTGACTGATGTAGGTATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGCAGAGCTCAATCGACAAGGGGATTTACAAATCGTATCTGAGGGACTTGCGCAACTCAAATAGCTCGAAAAGGTATAGAGGAGCTTGTTCAGATTAAGGAGTCTGAATATAAGGCAGCATTTACAAAGAGTTTAGAAACAAGTGAAGTCAGCTATCGTACAGGGATAGGAGTTCAATCTTAGTTTGCGATAGCGATGGGTACAAAAAGATCGACCGACTTTTTCCATCGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGAGAGCAAGTTTTTTGTGGTATATTGGAAGTGCTTTCATGTTGAATGTCTTTATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGAACTCCCCTATCTGAACGTAGAAGATGGTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTAGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATTGACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGATAAATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 483405-483735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAUJ01000008.1 Streptococcus oralis subsp. dentisani 7746 strain CECT 7746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 483405 29 100.0 45 ............................. ACACAACCCAAAAGAACGTGGAGATTGGTATCCACAATTATCACA 483479 29 96.6 51 ................G............ TGTTTGCCATCGAAAAGACGAGTGTAATCAATGACAATTGAGTCACCTTTC 483559 29 100.0 41 ............................. GCGCCCTCTTTTAAGGCAAGTTTTGGATTTAGAGTTCCTCG 483629 29 96.6 49 ...A......................... ATTGAGTAAACTGTTGCGAGATTGTCGAGAATGCCAAAAGCAACAGCAT 483707 29 82.8 0 ...A.....................GCTG | ========== ====== ====== ====== ============================= =================================================== ================== 5 29 95.2 47 GTTCTACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTAAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCGGAACTTTGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGCTGCAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTAGATAGTCAAATCAGAGAACTGCATGATATCAGCCAGACGGAAGCAAGTAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTCATCTATTTCAAAAAGCGAGAATAAATGTATATTATCTGGACATACGATGTTCATCACAAGCGCGTGCCTAAGATTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTGACCTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTTGGGGTCAGTACATAGTAGGAGAGTTTTTCCGTGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCACAGTGTCGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTCTTTTCTACTTCATTTATCGAAAAAGACCTGCTATCCAATAGCCAACCCTACTGTACTAGTTCATTTTCAGCTTATCTATGGTATAATAAAAGGTAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGACGGAGAGGGTCAGTTTGATATGGAACGCCTC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //