Array 1 129186-128485 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQM01000004.1 Escherichia coli strain 8380wC1 NODE_4_length_354237_cov_30.5043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129185 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 129124 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 129063 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 129002 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 128941 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 128880 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 128819 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 128758 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 128697 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 128635 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 128574 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 128513 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146363-144687 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQM01000004.1 Escherichia coli strain 8380wC1 NODE_4_length_354237_cov_30.5043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146362 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 146301 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 146240 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 146179 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 146118 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 146057 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 145996 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 145935 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 145874 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 145813 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 145752 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 145691 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 145630 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 145569 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 145508 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 145447 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 145386 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 145325 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 145264 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 145203 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 145142 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 145081 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 145020 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 144959 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 144898 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 144837 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 144776 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 144715 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //