Array 1 26119-26677 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000007.1 Clostridium botulinum strain 50867-CD map unlocalized plasmid p1BKT015925 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26119 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 26184 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 26252 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 26319 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 26385 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 26451 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 26517 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 26583 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 26648 30 83.3 0 ......................GAGA.T.. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.1 36 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : AGATAGATTTGTGTACTTCTAATTAGTATCAGAAAATATTACTGGAAATTCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4758-3410 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000099.1 Clostridium botulinum strain 50867-CD map unlocalized plasmid p1BKT015925 contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4757 30 100.0 37 .............................. GCTTTGAAAGCTTGTCCCGAATAGCTTGTACACTTAT 4690 30 100.0 36 .............................. GAAACACAGTTTAAAAACAAATTTGGAAGTTGGAAT 4624 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 4559 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 4493 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 4426 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 4360 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 4294 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 4230 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 4163 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 4097 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 4031 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 3966 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 3900 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 3834 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 3768 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 3703 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 3636 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 3570 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 3504 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 3439 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 106-918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000112.1 Clostridium botulinum strain 50867-CD map unlocalized plasmid p1BKT015925 contig_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 106 30 83.3 35 ..C....C..CC.C................ ATTAGTTTACCACACTTTGGACACATTCTCATTAG CC [111] 173 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 239 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 303 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 369 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 435 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 500 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 567 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 631 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 698 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 764 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [788] 828 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [842] 889 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 95.4 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : TCAAAATTTCTCATTTAGATTCCTCCTAAATTCTTATAAGTATATTATTCCAAACTAACCAATTTTCCATACAAAAAAGATGTAGGTTAATTTGTTTTTACACAAA # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 21076-21791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000039.1 Clostridium botulinum strain 50867-CD contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 21076 28 79.3 194 A......A.........-..AC.....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG T,A [21078,21086] 21300 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 21367 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 21433 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 21502 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 21567 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 21632 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 21697 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 21763 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : TTGTATAAAACTTGGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTGTATGGAAAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 15265-14908 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000050.1 Clostridium botulinum strain 50867-CD contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15264 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 15199 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 15133 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 15067 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 15001 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 14937 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 18250-16376 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000050.1 Clostridium botulinum strain 50867-CD contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18249 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 18182 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 18117 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 18050 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 17985 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 17921 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 17855 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 17790 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 17723 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 17658 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 17593 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 17524 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 17458 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 17393 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 17328 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 17262 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 17196 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 17130 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 17064 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 16998 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 16933 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 16866 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 16800 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 16733 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 16667 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 16602 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 16536 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 16469 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 16404 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 21563-21201 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYQ01000050.1 Clostridium botulinum strain 50867-CD contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21562 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 21494 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 21427 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 21360 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 21295 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 21229 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTC # Right flank : AATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //