Array 1 1849010-1850687 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJT01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05213 2014LSAL05213_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1849010 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1849071 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1849132 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1849193 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1849254 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1849315 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1849376 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1849437 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1849498 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1849559 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1849620 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1849681 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1849742 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1849804 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1849865 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1849926 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1849987 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1850048 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1850110 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1850171 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1850232 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1850294 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1850355 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1850416 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1850477 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1850538 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1850599 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1850660 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1866946-1868927 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJT01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05213 2014LSAL05213_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1866946 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1867007 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1867068 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1867129 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1867190 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1867251 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1867312 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1867373 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1867434 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1867495 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1867556 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1867617 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1867678 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1867739 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1867800 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1867861 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1867922 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1867983 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1868044 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1868105 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1868166 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1868227 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1868288 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1868349 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1868410 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1868471 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1868532 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1868593 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1868654 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1868715 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1868776 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1868837 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1868898 29 96.6 0 A............................ | A [1868924] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //