Array 1 47-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000027.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. GACATGGGGCACGGGAAGGACCTCACCGAGTA 108 29 100.0 32 ............................. GACATGGGGCACGGGAAGGACCTCACCGAGTA 169 29 96.6 32 ................G............ ACCGTCAGCCGGTGGGAGGCCGGATCCCGCAC 230 29 89.7 32 ......T.....T...............G GTGTCCGCTGGCATCATGATGACGTCTCCTTG 291 29 96.6 32 ......T...................... AACGCCAAGTTGATGGCTCACGCTGCTAACCT 352 29 100.0 32 ............................. CCCGAGGAGATGGCGGCCCGGCTCAAGGAGCT 413 29 93.1 0 ............T...............A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GAAAAACACCTAGCAGTCCAAGTCTTCTGCGTGGCTTCGACGGGCCG # Right flank : AAGAGCACTTGCCCGAGGAGGGGGAGGGCCCTGTGAACCCTGCGCGGGTGGGAGAGTGGGAGAACGGCCTGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCGGGGGGTGCTTGGGCCGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGTGAAGGAGCCCACCGCCACCGTCGAGAAGGTTACCGAGACGGCCACGGGGCGGGCGAGGCCTGACTCAACACGCTCAGTCGATTAACTTTACAAATACATCTGGCGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGCCGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCAAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60276-61341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000026.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 60276 27 100.0 35 ........................... CGTGTACATCACTGTACCGGCGTATGTACAGTGGC 60338 27 100.0 34 ........................... CGGACCCGAAGACGACGATCCTCTGCTCGTCCTC 60399 27 100.0 34 ........................... CACAGTAATGGTCTGACCGTTATTAGCATTGACC 60460 27 100.0 34 ........................... CTGCTGTTTGATCTTAGTGTTCAACTCCTTACGG 60521 27 100.0 34 ........................... CCGCGGACTGCTCGTCCCTGGCCTGCGGGTCGAT 60582 27 100.0 34 ........................... CCTTTATCAACGGGGGCGGGGCCCTTCCAGGACG 60643 27 100.0 34 ........................... CGACGTGCTTGCGGGCCTGCCTCACGCCCGCCTC 60704 27 100.0 34 ........................... CGCCAAGTACGTTGTCGGCATTCACTGCCATTGG 60765 27 100.0 34 ........................... GGCGGGTCGGCACTGGTGCGGTGGTTGGTAGTGC 60826 27 100.0 34 ........................... GCGCATTCAGGGACGTCACCGCCCCCATGATGGC 60887 27 100.0 34 ........................... GGTACCCGTCACTGTTCGTCACTCGTCAGATGGC 60948 27 100.0 34 ........................... GGACGATCCGCATACGGGTGCGGGCATCCCCGGT 61009 27 92.6 34 ........A.....C............ GGGTGAAGGTGGAGAAGGCGCTGCGCCTGTACCG 61070 27 96.3 34 ..............C............ GGATGGTGGCCGCTCCGAGTGGGATGATCGACCT 61131 27 96.3 35 .......................G... GCGGCACCAACATGCTGGACTGGTGGCCGAGGAGC 61193 27 88.9 34 ..T..........TC............ GGGCGGCCTCATGCAACCGGGCTTCTGACTCAAC 61254 27 92.6 34 ..T.............T.......... GCATCGTCTCGTCCGCGCCCAGCAGTAGCAGCGC 61315 27 77.8 0 .C........T...C........CT.C | ========== ====== ====== ====== =========================== =================================== ================== 18 27 96.9 34 GTCAGCCCCGCGCATGCGGGGGTAGAG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGTTGGGCCGCCGTCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCTGGGGGGCTTCGGCTTCCGTCCGTGGGACTCGCGGTAAGGACGGGGGTGGTTGAGGCCAGACTCGCCGAGACAAGGACATTGGCTTCCCTGCCTCGAGTTCTGCGGGCCGCTACCGTTCCTTCATTGCAATGGACCACTGTTGTGCCGACGGCGGAGGAGCCTGAAGGCATCATGGACATACTCGAGGAATGCGCCTCGGGGCTCGGCTGCAGACTCGTTGCGGCTGAGCGTCACTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGCAAGACAACGAGCGCTGGCACGTCTCGGTCGCCTTCGACGCGAAGGTACCCGGGCCGGTGGTCTTCGACGGCACCCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCACGGCGACCCCGAGCCGACTAGCATCGCAGGTCAGCAAGT # Right flank : CATCGACATGCGGTTGACGCTGCCTGGGCCCGGTCAGCTGCCCAGGGCGCCTACTGCACGAGGGTCGGGTGCTACTGGAAGAGGGTTGGGGCTACTTCGCGGGGGTCGGGGGTTCGTGCAGTACGCACAACCTTCGGCCAGTAGATCCCCACCCTCGTGGAGTGGGCCGGCTCGAGGACGGCGCCAGGGCTGAGCCGACGTCGAGCCGCCGCCGGGAAGCTGCGCGGGAACCAGGCGGCAACCACAAAGGGCCCGGTCAGAGGTCAGGCCGGCGGAAGGCGGGGCCGGCCCCTGGGGTGAGGGCGCCCGGCGCCACCGCTAAGACCTCGCCAGACCTCGCGGAGTCGAGCACGTCAGCAGCTCAGTGTCCACGGTGCTGACATCAACGGTGCCGCCGTCGGAACGCCCAGCGGAATCGTTGTAATTCCAAGGCTCCGTCTCGGCTCGCGACGCCGGTGCCGGGTTGATGTCAGCGTCATGGACACAGGCGTCCCACCAGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCATGCGGGGGTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 772-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000081.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 771 29 100.0 33 ............................. TCCAATTCCCAGCACGCGCTCACGGAGGTCATC 709 29 96.6 32 ............................C TACCTCACGTTTGAGGGCTACATCCTCGACGT 648 29 96.6 32 ............................C GATCATCCTGGTGGGCCATCATGTGAGCGGAC 587 29 100.0 32 ............................. TGCGTTGCCGGCTGGCTGGAGTTGGAGGAAGC 526 29 96.6 32 ............................C CGATGACGTTGACATGGAAGACCTCTCCGCTG 465 29 100.0 32 ............................. GAAAGCGGCGCTGCGGAACATGGCACGCTCCG 404 29 100.0 32 ............................. TCGAACTCGGTGTTCGTCAGCCTAGCCCTCGC 343 29 96.6 32 ............................T GTCCTGCCTCCCATTATACTGATGAATGTAGG 282 29 100.0 33 ............................. ACCTACGGGGCAAAGAAAATCGCGATCACCAAC 220 29 96.6 32 ............................C GACGACCCGATCGACAGCGCTGACCTGACGCC 159 29 100.0 32 ............................. GCGAGGTGTTGGCTGTGCAGTGCGCGCGGTCC 98 29 96.6 32 ............................C AGGTACACCCACCAGTACTCAGACCTTGAAGA 37 29 82.8 0 ....................TGG.G.G.. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : CTGGAAAGACCACCCCGAGCTTGACTTAAGGCAGGCACAAGACCACGGGGCTGAACGTCCAGGTCGCCTGCACCCTCTCAGGGACCCTGGCCTGGGTATCCGACCCCCAGGACGGATGCACACACGACGCCAAGGCCCTGCGCCGCAGCGGCCTGCTCGACGTCCCCGCCACCGACCTACCCGACGGAGTCTCACCACCACGCCATATCGGCGACAAGGGATACATCGGACTGGGCATGATCACCCCCAAGAGAAAACCCCCAAACCTGCCGCTCTACCCAGACGACAAGACCTACAACAAAACCGTCAACCAGATCCGCTACAAGATCGAGCAAGTCATCGCCAACATCAAAACCTGGAGAGTCCTACACACCGGCTACAGAAGACCACTACAAACCTTCCCAGAAACCATCACAGCCATCCTCGGACTCATATTCACCTACACCCCATGAATAAGCCTCATAGTCCTGAAATCGTCG # Right flank : GTGGTGTTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2080-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000010.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2079 29 100.0 32 ............................. GCGTGCGCCGCCGAAGTCGGATACAGCCGCTG 2018 29 96.6 32 ............................G CACATTCGTATAGCAGAGGACTCGTATCCGTA 1957 29 96.6 32 ............................A AGAATCAGGTCCTCAGGCTTAGCCGAGACAGG 1896 29 100.0 32 ............................. ACCGAGTTCGACTTCGTGCGCCAGCTGGAATG 1835 29 100.0 32 ............................. ACGTAGGTACCGAAACGGTTAATGGATTTGTG 1774 29 96.6 32 ............................A GGAGTCCTTGACCCGCGTGGACTCGGTGGCGG 1713 29 96.6 32 ............................G AACCACGACACCGCCGGGGTGTCCACTCCTGG 1652 29 96.6 32 ............................T GCGCTTATGGTAGTCAAGAGACGCGTCATTGC 1591 29 96.6 32 ............................G AAATCCCATTAATCTCCCTTTCTGTGCACAAA 1530 29 100.0 32 ............................. GCGTTGGCCGTGCTCTTCAACGTCTCCTACGC 1469 29 100.0 32 ............................. GTCGTCAGCCAGGCCCAGACCAATGATTTGAG 1408 29 100.0 32 ............................. GGCAACCACTACTCGGCCCGCTGGTCGTGGAG 1347 29 96.6 32 ............................G CCGGCCCGAGGGGGCAACGCCTACCGCGGCGC 1286 29 100.0 32 ............................. ACGGCCGTGTCGGTCATGATGTCGAGTGCCTG 1225 29 96.6 32 ............................G TCATCGGGAGGGCACAGGAGCCCAACCCAATC 1164 29 96.6 32 ............................G TGAGAGAAACGTCATAGGCGGTGGCGGCATAG 1103 29 96.6 32 ............................G CGGGAGAGCTTCTCCAGAGTCACGGGGTGATC 1042 29 100.0 32 ............................. CCAGGATCGTCCTAGCGCGCCTCATGGAGGCG 981 29 96.6 32 ............................G ACCCGCACCGACATCGCCCGCGAGCTGGGCCG 920 29 96.6 32 ............................T GGGCGCATTTATTACCGCATATGCCCGAAAGG 859 29 100.0 32 ............................. GACATCTACATCATGGCGCAAGCGATGCGCGT 798 29 100.0 32 ............................. GGCTTAATGTACACATCCTGGTACTTGCTCTG 737 29 96.6 32 ............................G ATCGCGTCGAGCTCGTCGTCGCTGACGCGACT 676 29 100.0 32 ............................. GGCCAGGAGACCTGCCCGGTCGGCTTGCGTGT 615 29 100.0 32 ............................. GACTTCCAGGATTGGGCGTATGAGGCCATGGG 554 29 100.0 32 ............................. TGCTCCGTGAACTCCTCTGGTGAGATAAACTG 493 29 100.0 32 ............................. CTCACCCAGACCACTGTGGTGGCCGGGACCGG 432 29 100.0 32 ............................. GGCTCGACGCCTCAGACTATGACTTTGAGGCA 371 29 96.6 32 ............................G GCCGGCTCTACCGTGTTCGCGCGCGTCGAGGT 310 29 96.6 32 ............................G GTCGGCAACCTTCAGGACGTGCTAGTCTCTCT 249 29 100.0 32 ............................. GAGAGGGACAAGAAGGGTGACGGCAGCCGCGA 188 29 100.0 32 ............................. CGCGGCGCTGTTCTCTGACGGCAGCAGGAAGA 127 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.4 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAATTACGCCGGAGAGGACGCAGGGGGATGGTAGTCCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCTATGACCCGCTGGCTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCATACATCGGGGAGGGACGGGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGC # Right flank : TGTCCCACCAACCCATAGAGGCTTATTCATAGGGGTGTTTGGGGTGTTTTGCCGTTAATAGTGTGTCGCTAAATAGGGTGGCGGCTTGCTCTTGAGAGA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21680-23150 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000048.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21680 37 100.0 34 ..................................... CGTTCTTCTCGGGGCCCCACGCACCGGTCGAGAA 21751 37 100.0 37 ..................................... GTGTCCTCGTCAATCTTGTAGTCACCCTCTTCAGTGA 21825 37 100.0 33 ..................................... ACTCGATCAAAGGCTTTTACGCTGGAGCGACCA 21895 37 100.0 34 ..................................... GAGTCAAACAGTTCATAGTGGTCCTGGGGCTCGC 21966 37 100.0 36 ..................................... GCTCTTTCCTCGACTCCTCACGTAATATCTCTGCAC 22039 37 100.0 34 ..................................... TTCTGCTGTCAGGTGCTCTAGGATGTTTCCGGCA 22110 37 100.0 36 ..................................... CAATGACAATGACGTCATCTGTCTCGTCATCCTCAC 22183 37 100.0 37 ..................................... TCGATGTCCTCAGCGGCCCAGCCGTCACGGCGAGCCT 22257 37 97.3 33 ....................................G GCCGCCCGGCGGTCGACGCCGTCGTGAGCACCG 22327 37 97.3 38 .................................G... AGCATGAGACTTCTCGATCATTGCCTCCCAAGTGGCAA 22402 37 91.9 35 .C................................AC. CACATATTCCCTGTCCACAGGTCGTTGATCTTGAG 22474 37 78.4 21 ACT...T....A.TC..................G... GTCATAGTTGTTCACTATGAC Deletion [22532] 22532 37 70.3 34 CC.TCCTT....GT.........C..C.......... CAGATCCCTCCGAGGATCACGCACAGCTTGTTGG 22603 37 94.6 33 ..............T......C............... TCAAAGGCGCGGCGTCGATACTCCTCAGGTGAG 22673 37 91.9 37 A....................C....C.......... TTGTGCAATTCGCTCAGCTTTGTACTCCTCCTGGTGC 22747 37 100.0 37 ..................................... ATGACGGTAACGAGCGGGACGCGGTCCTCGTCGTCCA 22821 37 100.0 36 ..................................... TTGTCAAGCAGGACGCTGATTCCATCCTAATTGCGG 22894 37 91.9 35 .......G..C..........C............... CAGTTGCCATCCGCGAGGCCGTACCAGAACACCGC 22966 37 89.2 37 A......G.....TC...................... ACCAACGGCAGCAGAGAGCATCTCAGATACTCCAAAA 23040 37 97.3 37 .........................C........... ATTGGCCCTCCTTCTTTGTTGATGTGTTTAGTCAGTA 23114 37 78.4 0 ........T.................CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 94.2 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGGCAGGCCGACGGCGGCGCCGGCTGGTGGCGGGAGGCTGGCGCAAGGCCGTCTACATCTTTCTTTCTGGCGACACTACCGGAGGGGAGGCGGCCTGTACGGGGAGTTCAAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGGACGAGAGCCGGCGGCGTGCCGGTCGAGCCACGGAAGCACAATGTGTCGACAGTCACGGCTAGGAACGTCGATCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGAAGATGCTCAAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCCCTCCCAGAGGCAGGGG # Right flank : GGACTTACAGTCCACCCTCATCTCCTTAACGAGCTGAGCGGCCAGGCGGCTAGGCGGAGGAAGTGCTCTTGACGTCGAGTCCGGGGCTCGACTCCTCCGCCACCACAACAGGCTGTGTCTGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGGAGGTGCTCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGATGCCGAAAGGTGGTTAAATAGGAGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGTTCCCAGAGACAGGGGTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGACCTCTGGATCGAGACCAGGAACTGAATCAAGAAGCTTGTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGACCAAGGATAACTTTACCAGCAGAAACAGCCCCAGCGTCAGAAAGCGCCCAGCACCAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 23482-24248 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000048.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 23482 37 100.0 36 ..................................... CTCTGGATCGAGACCAGGAACTGAATCAAGAAGCTT 23555 37 100.0 34 ..................................... CAAGGATAACTTTACCAGCAGAAACAGCCCCAGC 23626 37 100.0 34 ..................................... TTGATCGGCTTGGCGGCGACCGACTTAACCCCGT 23697 37 100.0 37 ..................................... GGAATATCGAGCGAGTTTGAATGTACCTTGGCGCCGA 23771 37 100.0 36 ..................................... GCTGATGTTGGATCCAGCAACCCCAAGGAAAGTTCC 23844 37 100.0 35 ..................................... CGGCACCCAGCACAGGTCGCCAGGCACCATCACGA 23916 37 100.0 35 ..................................... AGGATCGGGCTAACACCCCTGAATCCATGCTTGTC 23988 37 100.0 38 ..................................... GCCAGGATCACCTCCTGTTCCAGGTCCTCTCTTTCCTC 24063 37 97.3 37 ..........A.......................... GTGAAGACCTCGTCCTCCTTCTTGTTCCCCTTGATGT 24137 37 86.5 37 .C.......AA..TC...................... CAGAATCACCGCTCAGACCATGCTGGCGCTCCCTCTC G [24145] 24212 37 86.5 0 ..........ATT..................G...G. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.3 36 GTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CACCAGAAGGTGCATTAAGACACCAACGGCAGCAGAGAGCATCTCAGATACTCCAAAAGTCAGAAAGCACCCAGCACCAGAAGCTGCATTAAGACATTGGCCCTCCTTCTTTGTTGATGTGTTTAGTCAGTAGTCAGAAATCACCCAGCACCAGAAGGCCTATTGACGGGACTTACAGTCCACCCTCATCTCCTTAACGAGCTGAGCGGCCAGGCGGCTAGGCGGAGGAAGTGCTCTTGACGTCGAGTCCGGGGCTCGACTCCTCCGCCACCACAACAGGCTGTGTCTGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGGAGGTGCTCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGATGCCGAAAGGTGGTTAAATAGGAGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGTTCCCAGAGACAGGG # Right flank : CATATATCGACACGTGCCGGGAGATCGCATGCCGATCTTCTCCCTTGCCCGCCAGAATCTCGATATCCTGTCCTCCAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCAATGATGCGTCCAGCCCAGCCATCACCACCACTATCAACGACACCGCCATCCCCACCTCGCCCGCACCGTCGTCGCCGTCGTTCCGATCGCGCGAAACCGGGCCAGCACCTCGGGGAGGACATTCACCCGCTCCAGCACGCAGCAGGATTTACGTCGTCCGAGGCGGCCACCGGCACCCTGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGGAGGCTGGCGCATGGTCCTCGCCAAGGACGCCTCCGACGGCATCCTGCAGCGCAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAACCTGACCCGCTCCTGAGCTTCGGCATCCCCAAGGGCACCTCCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCGCCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 40376-41068 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKM01000048.1 Actinomyces oris strain MMRCO6-1 MMRCO6-1_contig050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 40376 37 100.0 38 ..................................... ACTGAATCTCGGTTGAACTCATCATCTTACGTTCTCCG 40451 37 100.0 36 ..................................... GGTGAGCCAGTTGTCGTTCATAATGTTCCTCCTTGG 40524 37 100.0 36 ..................................... ATTCTGGTCATTTTCTCTATCTGTTCCTGTACTTCA 40597 37 100.0 35 ..................................... TAGAACATTCATGAGGTCTCACGTCCCAGTCACAC 40669 37 100.0 35 ..................................... CGCTCGACCTCCACCGAGCCAGGCGCCGTAAACCC 40741 37 94.6 38 ......G...C.......................... GAAGGTCCTGAGTGTGTCGAAGCCGATCCAGCCGTCAT 40816 37 94.6 36 .........T......T.................... TCACTCTCAAACTGTGAGAACTGGAGCGGCACGTCG 40889 37 94.6 33 .........T..G........................ AGCTGGGCCTCCCACTCAGGGATCTCTTCGCCC 40959 37 97.3 36 .................G................... TGACTGCGTCAAGGCGCCCCAGAAGCTCGCTGATTA 41032 37 81.1 0 ..........................CCT...C.CTG | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 96.2 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CGCCTTGGCGGTCCTGACCTTCATAGGCCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGAGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGCTGATTGTTGACAAGGTGGGCGGCCGGGTGGCTCGGCGTGGGAAACGCTCCTGACGCCGAGTCCAGAGCCCGGTTCCACCTCCACCACACCAGGACGTGTCCGCAGTCACAGACGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCCGAGGGGGCGTCGGTGGCGCTTGGCGCCAGGACGCCGAAAAGTGGTTAAATAGGGGCCGTGCCGGCCGGTCCCGCGGGGTGCCTGCGGAGCCGGTGGCGCTCCACCCCCCCCGGAAACGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : GGGAATTGCCGTGCGCTGGCTGCAAACAGCGCCGGAAAACGGTCAGTCCGATCGCCAGTCCCTTGAACAGGCCCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGGCGCCGTCCTCCTCGACGGCAACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCGCAGGATTCCAGGAAACGTCACGCAGCCAAAACGCCCCTACCGCAGGAGCCGGTCAAGCAGACGCAAACCAAAACGGGCGGCACCAAGAAACTCGGCGACAACAGCCCAGCCAAGCCGCCCCGCGCGCCGCCCCCGCTTCAGGCGCGGCGCAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACGCCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGGAAGGCCGCTCAGCGGCGCTCGTGAGCCCCTTCGCGTCCTGGCTGCTACCAGCACCCACCACGACCTCGTTGTG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //