Array 1 7654459-7656381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068985.1 Nonomuraea coxensis DSM 45129 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 7654459 30 96.7 31 .............................G AGGCGGCTGACAGCTTCGCGGGCGTGGACTG 7654520 30 96.7 31 .............................G ACGGTTTACCAGGAACAACAGCACAGAGCAA 7654581 30 100.0 32 .............................. GGCCCGGCCCCTTGCCCGGCTCGGTCCACTCC 7654643 30 96.7 31 .............................A GTATAGAGCCCAGAGCCGCTCTAGAGCAGTC 7654704 30 100.0 31 .............................. GGCACTCGGCATGGATGGCGCTCCAGAAGGC 7654765 30 100.0 31 .............................. GCCGCCATACGAGTACGGCGATGCGCGAGCT 7654826 30 96.7 31 .............................A TGCGCCGGGCCGGCGGCAGGTCGTGGGTGCC 7654887 30 96.7 31 .............................T CGACCAGCTGATCGAGGCCCACATCCTCAAC 7654948 30 96.7 31 .............................A GCGACGGGACCGTGGTCGGCTGCCGGGTGCT 7655009 30 96.7 31 .C............................ GTCAGCTCCGACAGACGCAACCGCAGCTCGT 7655070 30 96.7 31 .............................A AGCTGACCTCTTTGGTGTAGGCGTAGAAGCC 7655131 30 100.0 31 .............................. CGGTCAACTGCGCCGGGGTCATGGGCAAGGG 7655192 30 96.7 31 .............................T GGTCGGCCGCCTGGCCGCCGGTGAAGTCGAT 7655253 30 96.7 31 .............................A TGTCCGGCCTGCGTGACAGATGGAAGACCTC 7655314 30 100.0 31 .............................. GGGCGTACTCCTCGGTGTACATCAGGAACGT 7655375 30 96.7 31 .............................G ATCATGATGTCCTCATCGCCCCATGACGCAG 7655436 30 96.7 32 .............................G CAGGGAGAGTGCGTTTAGGGAATGGCGGCCCT 7655498 30 96.7 31 .............................G GTGCTAGCGGAAGCAGTAGCCATGATGAATT 7655559 30 96.7 31 ............................T. GGATGTGCTCAAGGTGGCGGCCCTATGCCAG 7655620 30 96.7 31 .............................T TAGTGGTGGCCACCATCGAGTCGGTCTCGCC 7655681 30 93.3 30 ............................GT GCCTTCGACGGCGAACCGTTGGCTGGTCGA 7655741 30 96.7 32 .............................T CGGCCCCTCTAGCGTGGTGCTCACACCGCGCA 7655803 30 100.0 31 .............................. GTATTGAGACCAGGCGGACCCCAGTCCGCCG 7655864 30 96.7 31 .............................A TCCAGGCGGGCTCCTCCCAGATCGAACGCCA 7655925 30 96.7 31 .............................A GGCAGTCGAAGTCCTCCCAGTCCCACAGCGG 7655986 30 93.3 31 .................C...........T GGGCGCGCTGGTCCGACGGCGGCGCCGTGAC 7656047 30 100.0 31 .............................. ACGCGCCGCCGATGTCACCTGACCGCCACGC 7656108 30 96.7 31 .............................G AGCGTGGCCACCGCGAGTTCGAGGTGACGGC 7656169 30 96.7 31 .............................G TCCTCGGCTCGGCAAGAGGATGGGGAGGACC 7656230 30 93.3 32 .................C...........T GCCGGCCCGCCTTCCGGACCGACTTCGACTTG 7656292 30 93.3 31 A................A............ GTGCGGCGGCGCGGACGCGAGCCGCAGCCTT 7656353 29 83.3 0 .........TT............-.A..T. | ========== ====== ====== ====== ============================== ================================ ================== 32 30 96.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AACGGGTCGTCGCCGAGCCAGCGCTGATGAGCGTCAGCACGTCGCCGGCGGAGCCCGGCTGGGGGGTCATGCCGCCGACAATAAGGTCACCCATCTGGCAAATCAAGAGGGCAAATCGACCGAACCCCGCTGACTTCTGTCGATGACCGAACAAAGTGGGTGTTGTTGCCGTACGCGCAGAAGCCGGACACACCGGGGTCGGGGCTACAGGTTCAAGCCTTGCCGGGAACATCGTCCAAGCGCCATCGACCAGCGAAAACGTCGGGCGTCGAGGGTTTTCACGTCTCCGGCGATGCATGGCTGCGACTGATCGCCTGCGGTCGGCTATGCCAGATACGTGCGTACGGCGGATACCGTGCGACACTCTGTGCAGCCGCTACTGCGGCAAGGTGGGTGGCATCGCCATCACGTACGGGCTGCTTGACACGTCCAGAATGTCCGAACCCAAGAAAGTGCTCAGAAACGGCCTCTGTCGCGGACAAACGCGCAGGTCATCAAGA # Right flank : CACCAGTGCGTCGTCAATGATGACGCGCTAGACGATTCCGCAGGTTCGAGGTTCCGAGGGCCTTACCTACTCGTTCACCGCAGATCTTCCCTCCGTTCTGAACGGCGCCAGCGTCACCGGGCCTCACCAGTAAGGAGCATCTGCCAGAGGCGTTCCGCCTTGCCCCGCGTCCAAGGACCGGCGTACACGACCCTGCAAGGAGTCGTCTGGTGCGTCCGGCGGACCATGTATGCACCGCCGCCACTGATGAGCTCGTAGACGACCACACAGCACGAGCACGTATGGCCGAGAACTCGCTGACGACCCTGCTGATTCTTGAGCCGCTCGGCCGGCGCCCACGAGATCAGGACAGACGGGGCCACCACACGGCGGGAAGGATGTGAGGACACTTGCGGACAGGGCCAGTCATCGTCGTCACGGTCTGGCAGCTTGGCCATTAAGACAGCCTCCTACCTTGCGATGTGGCAGCGTTTAGGCACGTAGCTTCTTATGAGCATATG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7657704-7657369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068985.1 Nonomuraea coxensis DSM 45129 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7657703 30 100.0 31 .............................. CGATCAGGCCCCGCATAGAAATGCCGGCGGT 7657642 30 100.0 31 .............................. AGGTCACCTCGGCCAAGCTGGAGGCCGTCCT 7657581 30 96.7 31 .............................G ACTCCTACCAGGCGGAGCCGAACACGTTCGT 7657520 30 93.3 31 ........T....................T CCTCATGCCCCGGCAACGGGCTTTCGACGAA 7657459 30 93.3 31 ....C...........T............. CGAGCTTGGACCCGGTGTATGCCGCCAACCT 7657398 30 86.7 0 .......TG...............T....T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AACTACGCCGACGAGGTGCCCTGGTGACCGTCATCGTGCTCACGCGGTGCCCTGCCGGCCTGCGGGGGTTTCTGACGCGCTGGCTCATGGAGATCGCTCCCGGCGTCTTCATCGGTGGCCCATCGGCTCGCGTGCGAGAGCACCTTTGGCTGCAGGTCCAGCAGTATGCGGATACAGGGCGAGCGCTCCTCGCGTACACCACGGACAACGAGCAAGGTTTCGCCTTCGAGACCCATGACCACAAGTGGCACCCCATCGACCATGAAGGCCTGATCCTGCTACGCCGCCCGAAGGAACTGCAGGAACGCGTCCCGGAAGCGCCTCGAAACTGGAGCAAGGCGGCCAAGCGTCGTCGCTATGGGCAGCGTTGATCAGAGTCCCGCTTCGGTGGTGTCTGGGAGCGGTGCGAACGTAGTCATAGGGGCGTGTGGGCAATATGTCCGAGTCGATGAAAGTGCTCGAAAAGAGGCGCAACGCGAAACATCGCTGCAGGTCAGAGA # Right flank : CGTCCATCTCAGCGCTCAGGGTTTCTTGCTTGCTGAGAGTTGTCCCAGACGAGAGTTGTGCGGTCGGCTGCCAGGACGCGCTCGCGCTTACGCGGTTGCTTGATTACGAAAACCGGAACGCCCTCGGGGATGTTCAGTTCCTTTCGCTCCTCCGGGGACGGCATGCGGGCGCTGACCTCTGCCTCGCCCTCGATGACGACCCGCTCGACGGGTAGCTGGGGCCGGACGTGCGAGCCCTCACGCTTCACGGTGACAATCAGTCCTTCGCTCCGCAGCACCCCGAGCGCCTGTCGTACGGCCACCCGGCCAAGCTCGTACTGCTGCATCAGTCGCGTTTCGGAGGGGAGCGCCTGACCAGGCTTCAGCCGGCCTGATGCGATGTCCGCGCGAATGATGTCGGCGAGCTGCCGGTGCACTGGTCGATCGGAACCGAAGTCGATCACAGCAGATCATCATTACAACGCCACTACCTCATGTGCCCTTGTAGGCATATGCTCATA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7667233-7668974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068985.1 Nonomuraea coxensis DSM 45129 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 7667233 30 96.7 31 .............................A CCCTGACCAGCGTGAAATGGATGTCCCGGAA 7667294 30 93.3 31 ............................AA AGCCACCCACCTGGACGGCTATATCCCACCC 7667355 30 100.0 31 .............................. TCTCGAAGTCTCCCAGGACGGTCGGATCCAC 7667416 30 93.3 31 ............................TG CTCACGTCGCTAGCATCGGAAATAGCGCAGA 7667477 30 100.0 31 .............................. GCCGCGCGAGCACATTGTCTGTCACGGTCCC 7667538 30 96.7 31 .............................A TCGCCGGCGTGGAGCACTGCGTAACGGTCAG 7667599 30 100.0 31 .............................. GCATCTTGGCGGGCATCTTGAACGGGGCCGG 7667660 30 96.7 31 .............................G ACGTGATGACGGTGGTGACGCGGCCGTTGAC 7667721 30 93.3 31 ..................A..........G GGGGCGCGGAGTCGATCGGCTCCCACGGGTG 7667782 30 93.3 31 ............T................G TCGTGGACGTCCGGGCATGGGACCAGTGGGA 7667843 30 93.3 31 ............T................G TGGGCCTCTACAAGATCGAGCAGGGCACGCT 7667904 30 100.0 32 .............................. GGGCGGCGTGGCCACCGCACACCAGCGCCTCA 7667966 30 96.7 31 .....T........................ ATCGGACGTGGACGAGCGAGGGCAAGGCTGC 7668027 30 93.3 31 ............................AC ACCCGCGTACGACCCTGAAGGGAGTCACCGT 7668088 30 93.3 31 ....................A........G GCAACAACTCGGGGGCGGGCGGCCAGGGCGG 7668149 30 96.7 31 .............................A CCAGCCCGCCGCCGAGCATGACCTTGACGAT 7668210 30 96.7 31 .............................A GCCACCGGTTCAGGCGGCCCGCGGTGTCGTT 7668271 30 93.3 34 ..............T..............C GATGATGATGGACGACATGAGCGACCGCGAACTC 7668335 30 100.0 31 .............................. ACCACCCGCACCTCAAGACGCAGACACGCGA 7668396 30 93.3 31 ............................TG GTTCAGTCATCCACGCGACGTCGATCGTTCT 7668457 30 96.7 31 .............................G GCAACGTGACGAGCTCCGGCCCTTCCTCGCC 7668518 30 96.7 31 .............................C ATTCGGCCCACTTATCGACCTTGGTGTTCTT 7668579 30 96.7 31 .........A.................... GCCGCCCTTGCGGTGGAACCGGACGCATACC 7668640 30 93.3 31 ........................A....A CCTCGGGGACCACGATGCGGCCCTTGCCAAG 7668701 30 90.0 31 ..............T.........A....C TCAAACCGGGCACCGGCAAGACCACGTCGGC 7668762 30 86.7 31 ..........T...T.........A....A GCATCGCTGCTCCCCGAGGTGTCTCCACCTG 7668823 29 83.3 31 ............-TT.........A....G TGGGGTTGCAGATCGACCTCAGCGGCTTCGT 7668883 30 90.0 31 ...G..........T.........C..... CGCCCGGCGTTTCGGCATTGGCTAGACCACG 7668944 30 86.7 0 ..............T.......G..G...A | G [7668966] ========== ====== ====== ====== ============================== ================================== ================== 29 30 94.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ATCGTGAGTGGTCGCCAGCCATACCGCGAGCCGCCGGCCGTCCGCCAAGCCTCCGGGGAGCCCTTCAGCGATTACCTTCTTCACTTGTATTGGCAACCACTGATCCCATAGAAGACCGGCCACTGCGCCGCTGTCAGCGAAGTGCCTCCACAACGGCAACCACCCATCGGTGTCCCGATCATGCTTCGCCCAGACAGACCTTGCCCCTTCGGACAAATCACTAAAATGGGATATTTTCGATGCCTCCTCGCTGAGCACAGGGGTCATTAAAGTGCATAGGACCGCCAAGCGAAAGACACTCCCACAGAAAAGAGCCGTAAAACGCATACGACCAGGCCAGCGGATGATGCGGAAGAAGTTGCACGACAGGCAGCGATGATGCAGCCTAGAGCGACTGGATTGCAGCTTGACTACCTAAATACCCCTTATGCCCTTTATGTCGCTTCTTATGAAAGTGCTCCAAACCGCGCCCGTCGGCTGACATCGTTGCAGGTCAGCGA # Right flank : AAGAAGCCATGGTTACGAGCCACCATGCGCTTTGCATCCTTGAGTGGCCGGAGCAGCCGGTGGTTCGGTCCATCAATTCGCCGACGGCAGCCAGCCGGCGGTAAGGGTCCACAGAGGCGGCCACGGCCATCACGCGACCTCCAGAGATGCTCACGAACCCCGAATGATCACGTGGTGGCCGTCTTCATCCGATCAGGGACTACAGCATGGCCTTCATCGAGTCGCCGGCCGACAGCACGTACGGCTGCTCCGCCATGATCGACTCCCAGTTGTCCGCGATGGCCTCCGGCGTGATGTCGTCGGTCTTCCAGCCGGGCCCCTCGGCCACGAACACCCGCGCCACCCGCCCCGCGCCGACCGTGAACACCTCGCCGCTGACCTCGCACGAGTCGTGCGTCAGGTACGCCACCAGCGCGCTCACCCGCTCCGGCGTGAACTTGGCCTCGAACTCGGCCGGCAGCAGCGACTCGGTCATCCGGGTCCAGGCGACCGGGGCGATG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //