Array 1 2088-1460 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHX01000044.1 Vibrio cholerae strain N2794 NODE_278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2087 28 100.0 32 ............................ AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG 2027 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCTTTATTAG 1967 28 100.0 32 ............................ TGCACGATACTATCACCAACGCCGATGATTGT 1907 28 100.0 32 ............................ TTTTAGGGCGATAGGGATAAAATTCTCGTATT 1847 28 100.0 32 ............................ TTTCAGGCCGATAGTGAAGTCGTACTCACCCT 1787 28 100.0 32 ............................ TAGCACGCTAGATGATGAGTTGTAATAGCTAA 1727 28 100.0 32 ............................ CGTAGATTTATTAAAAATGGTGATCTTGCTGG 1667 28 100.0 32 ............................ GTTAACTAAATACATAGAAGAGTGAGGGGGGA 1607 28 100.0 32 ............................ AATCCTCAGTGCGTAAAATTTCATCAATCTGC 1547 28 100.0 32 ............................ GTCAGAGTTTCGACATCACGATTGAGTATTTC 1487 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAACTAGAGTCTTATATACTCAAGCCCATGTCGGAACGGACTATTTAGTAAGGTTTTTGACCTTTGATATTGCCTTACATGAATTTTTTAAGTCTATCAAAATCAATAGGTTCTCTCCAATTTTCAATGGATATGAAAGCGGAGTGTTCACGGATCTCGGTTTTAGTAAAAAAATATTCTCTGAAATTGATGATCAGGAATTTGAAGAGCTATCACGTATTATTTTAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTGTTACTATGCGTTGGTTTTTGTTGTTACGGTGTTATGCGGTAATTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATATTTCTTTTCAGTTCAACCATCAAAAGGATTCATCATGAACGTGGATAAGGCGAAAAAACGCATATTGAAACGAGTACAAAGAGGTTTCAGAGGTTATCCGCAAATATCATTAGAGTATTTCGGTGAAACGACCGATTTGGCGACCGAAGTAGTCATCACTTTTGTTCCTGAAGAAAATGCCGAACCACAAATTCAGAGATTTACGAGTGACAAAGATGTCCGTGAAGATGAAGCGATTCAATCGGTATTGCTAAAAATCATTGAACGAGCAGAAGCTGCGACTGTTTTAGAGAGCCGAGAAATATCGGTTATTTAATGATTTTTGGCAATGCTCAACGTTCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3295-2847 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHX01000021.1 Vibrio cholerae strain N2794 NODE_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3294 28 100.0 32 ............................ AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG 3234 28 100.0 32 ............................ TTTTAGGGCGATAGGGATAAAATTCTCGTATT 3174 28 100.0 32 ............................ TTTCAGGCCGATAGTGAAGTCGTACTCACCCT 3114 28 100.0 32 ............................ TAGCACGCTAGATGATGAGTTGTAATAGCTAA 3054 28 100.0 32 ............................ CGTAGATTTATTAAAAATGGTGATCTTGCTGG 2994 28 100.0 32 ............................ AATCCTCAGTGCGTAAAATTTCATCAATCTGC 2934 28 100.0 32 ............................ GTCAGAGTTTCGACATCACGATTGAGTATTTC 2874 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAGCCGCGGTGGTTACGGCTGTTGTGTTTGAGTTTAGTGATAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGTTTATAAAAGGATGGCGAGTATGAGTTGGCAATTTTTATTTCCGGTTATAGTATCGATATTATTGGCAGTGTTTGGATGGGTTGTTGGACATAAACTAACATCACAAAGAGACATTAGAAATAAGCAAAGAGAATTGAGGGTTAAGTATTTATTGGAAGCTTATGAGGTTCTGATGGTTTTAGGGAGAAATGGAAAGATTTTATTAAATTACAAAGAAGTAGAGAGAGCAGTTTTTATTATTGAGGTTTTTGGAACTAAAGAGCAAATTGAATTAACAAGAAGGTTTACAAAAGAAATGGCAGAAAATAGCAACTCAAACTTTACTGAGCTTGTTGTTTGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //