Array 1 10516-9292 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGRR01000278.1 Neisseria meningitidis NM220 ntnm06c.contig.325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10515 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 10449 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 10383 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 10317 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 10251 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 10185 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 10119 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 10053 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 9987 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 9921 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 9855 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 9789 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 9723 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 9657 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 9591 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 9525 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 9459 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 9393 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 9327 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //