Array 1 120-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCK01000018.1 Bacillus safensis strain B4107 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 120 32 96.9 34 ...........T.................... AAATCCTTGTCAATTTGCTTTGTATCAAATTTAG 186 32 100.0 34 ................................ TTATATGGCTGCCAAACGTACTCATCAAACCATT 252 32 100.0 35 ................................ TCTATCTTCTTAAAGGTTTTCCAGTCATGACTATC 319 32 87.5 0 ..............T....GA......A.... | T [348] ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTTACAATTATTTCCTAAAAAATGTTATAATTAGGGCGGAAATCGCCG # Right flank : TGAGAAAACATAACTCTGACTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGA # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 539-241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCK01000023.1 Bacillus safensis strain B4107 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 538 32 100.0 35 ................................ TCTGTAGTATTTCGGTAATCTAGGGCAACCCAGGT 471 32 100.0 34 ................................ TCATCACGCTGAAAGGGACTCAAAAAGAAGCTGA 405 32 100.0 36 ................................ AAATAGGTAGCTGTCACTCTCTTTTAGAGCGGTTAA 337 32 96.9 32 ...........T.................... ATTGATTCTCTATGTTCTGGTATTTCAATGGC 273 32 87.5 0 .......A...........T..A....A.... | T [244] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAATCGC # Right flank : TTGCGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTT # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 92735-93229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCK01000009.1 Bacillus safensis strain B4107 NODE_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 92735 32 87.5 33 .............T.....C..TT........ TCCCTCGTCTAAGCGGGTTGGCCAGATAAGAAG 92800 32 87.5 35 .............T.....C..TT........ CGAATCTCCTGAAACAGAAATCCCCGAATATCCAA 92867 32 93.8 34 ......T............C............ ACATAACGGTATGTGTATTCACCATCCTTAATTG 92933 32 90.6 33 .............T.G...C............ AATTGATCAAGATAATTAAACCCATCTTGGTTT 92998 32 100.0 34 ................................ GATAATAGCCGGCAAGCTGCTTCGTTTGGTACTC 93064 32 93.8 36 ...................C...T........ ATCGCTTGCATCGAGATTTACGTCCTGTCTCAAGAA 93132 32 100.0 34 ................................ GATAATAGCCGGCAAGCTGCTTCGTTTGGTACTC 93198 32 87.5 0 .............T.....T.A...C...... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 92.6 34 GTCGCACTCTACAAGAGTGGGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATACACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAAAGGCTTATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGGATGTTTTATGAAAGGGAAAACAAAATTCTTTATTGAAATTTGTGGATTCTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTCGTCAGTAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCATTAGTCATGTTTTTAAATGAATTCAAAACTTTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAAGAAAAGTTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCATCTTTTCATTCGATAAAAATGAGAAAGAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGAGTGGGTGGATTGAAATAATTTCTAAGAATGTATCAGCGCTTATAACGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATGGTATAGAATCATCAAGATTAGCAAAAGCTTCCCGTCGCACTCTACATGAGTGCGTGG # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACAAGAGTGGGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTTTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 93574-93872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCK01000009.1 Bacillus safensis strain B4107 NODE_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 93574 32 93.8 33 ...........T.......G............ AATTTCTAAGAATGTATCAGCGCTTATAACGAA 93639 32 100.0 34 ................................ GGTATAGAATCATCAAGATTAGCAAAAGCTTCCC 93705 32 100.0 34 ................................ TGTCGGCTGCGGCACGTTTAGATATTCCGCTGGC 93771 32 93.8 34 ...................T....C....... ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 93837 32 84.4 0 .......C...T............T..TC... | A,G,CA [93846,93854,93860] ========== ====== ====== ====== ================================ ================================== ================== 5 32 94.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACAAGAGTGCGTGTATTGAAATATCGCTTGCATCGAGATTTACGTCCTGTCTCAAGAAGTCGCACTCTACAAGAGTGGGTGGATTGAAATGATAATAGCCGGCAAGCTGCTTCGTTTGGTACTCGTCGCACTCTACATGAGTGTGAGGACTGAAATTCTCGTCAGTAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCATTAGTCATGTTTTTAAATGAATTCAAAACTTTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAAGAAAAGTTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCATCTTTTCATTCGATAAAAATGAGAAAGAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TGATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAGAATTTACTGTTCATTTGTAAAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAATCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCAATAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //