Array 1 1141696-1140382 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJJ01000001.1 Listeria monocytogenes strain FSL L7-0411 NODE_1_length_1456564_cov_21.742136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1141695 29 100.0 35 ............................. ACATTATCATCAAGTAGTTGGCAAGAAAACAATTT 1141631 29 100.0 35 ............................. ATCGAACTCGAAAAATTACTTGCTTGGGTAGATGA 1141567 29 100.0 35 ............................. ATGACTGCAATTATTACTCCGAACGCGGCGGCAGC 1141503 29 100.0 34 ............................. AACCAAGTTGCCTTTTGTTTTCGAGACATCCACT 1141440 29 100.0 34 ............................. CCATTAAAATCCGAAACATCAAATCGTGAAACAC 1141377 29 100.0 37 ............................. AAAATCAGAATGGTCAGCTACTGGGAATATGGATTAG 1141311 29 100.0 36 ............................. AAAATTATTGGCTTATACAGACAAAGGAAAGACTTA 1141246 29 100.0 31 ............................. GAAAGTAACGGAAACGCCTTGGACTTCCACG 1141186 29 100.0 36 ............................. TATGAATGGGTGAATGAATATGTAGATAGTAAACGT 1141121 29 100.0 36 ............................. TATTGTTCCGTGGGCGAGGTTTTAAAAATGTTACAA 1141056 29 100.0 36 ............................. GAGCAATGGCAGTGCACGATGGTGAATGGCACGCTT 1140991 29 100.0 34 ............................. CCCATATAGCTTATTTTCGTTCGCGCTCCAACGG 1140928 29 100.0 38 ............................. TCCACTACTCGATTCCAGAACGCGTAACTTTGTATCTC 1140861 29 100.0 34 ............................. CGACGTTCTGGCTTACAAAGAGAGGTAAATGTTA 1140798 29 100.0 35 ............................. AAAGGAGAGTTGGAAAATGGGTTATACAGTATTAA 1140734 29 89.7 35 AG...T....................... TTTTCTATTAAGGCGGTAGACATCATTGCTTTTGC 1140670 29 100.0 36 ............................. CCTTCTCACTCTCGCCACGTATGCAAACTGCTTTCG 1140605 29 100.0 35 ............................. TTTGATTTTGCCGTTACTAAGTTTTGTGTTGTCCC 1140541 29 100.0 34 ............................. TAAAACATTACGGCTGATCAAATTTGTATAAATT 1140478 29 96.6 38 ..................A.......... AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 1140411 29 93.1 0 .......................C....C | A [1140386] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.0 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGATCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAATCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1159143-1158467 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJJ01000001.1 Listeria monocytogenes strain FSL L7-0411 NODE_1_length_1456564_cov_21.742136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1159142 29 100.0 37 ............................. TCCGGAATAGCCGTTGGTATTTTAGGAAATGCAAAAC 1159076 29 100.0 34 ............................. AGGATCGAAAGAAGATGCAAAAATTGTAAACAAT 1159013 29 100.0 34 ............................. AGGCTTTTTCAATCGTTATTTCTGTTCCTTTTTT 1158950 29 100.0 35 ............................. TGAGATAGCAAACAGACCTCGCGAGGTTTTAGACA 1158886 29 100.0 36 ............................. ACGGTTGAGCAAGAACTTGGCGGCTACACAGAAGGA 1158821 29 100.0 36 ............................. AAGGCAGATTTCAAAACAACGCCTGTGCAGATGTAC 1158756 29 96.6 37 ..............A.............. ACGGTTACAAAACCCTGAGGAGAGCCCGTCCAGCGTC 1158690 29 100.0 36 ............................. TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 1158625 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 1158560 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCATTGATAGCGCGCCAC 1158494 28 79.3 0 A.....A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 97.5 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGGCTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //