Array 1 42893-43348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCH01000017.1 Escherichia coli strain MOD1-EC5805 MOD1-EC5805_17_length_109666_cov_38.6673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 42954 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 43015 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 43076 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 43137 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 43198 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43259 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43320 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69048-70235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCH01000017.1 Escherichia coli strain MOD1-EC5805 MOD1-EC5805_17_length_109666_cov_38.6673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69048 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 69109 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 69170 29 100.0 32 ............................. ACGCATTCGAACTGGGCGACATAGAGCCAGGC 69231 29 100.0 32 ............................. GGCGCTGCAAAATGGGGTGGAAGAGCGGCGCT 69292 29 100.0 32 ............................. CCGCCAGCATATTGCGCTGCTCGATTGGGGGT 69353 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 69414 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 69475 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 69536 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 69597 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 69658 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 69719 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 69780 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 69841 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 69902 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 69963 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 70024 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 70085 29 96.6 32 .A........................... CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 70146 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 70207 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68182-69111 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCH01000012.1 Escherichia coli strain MOD1-EC5805 MOD1-EC5805_12_length_134089_cov_38.5206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68182 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 68242 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68302 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 68362 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 68422 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68482 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68542 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68602 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68662 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68722 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68782 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 68842 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68902 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68962 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 69022 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 69082 28 85.7 0 ....................A...C.CT | T,C [69102,69106] ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 74448-75616 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCH01000012.1 Escherichia coli strain MOD1-EC5805 MOD1-EC5805_12_length_134089_cov_38.5206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74448 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 74508 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 74568 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 74628 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 74688 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 74748 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 74808 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 74868 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 74928 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 74988 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 75048 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 75109 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 75169 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 75229 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 75289 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 75349 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 75409 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 75469 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 75529 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 75589 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //