Array 1 88682-87626 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819161.1 Streptomyces sp. CS090A Scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88681 29 82.8 32 CA.GG.G...................... CCGCCCGGTCGGTCATGGCCGCGCTGTAGATG 88620 29 96.6 32 .................A........... TCCGGACCACCCTGGCGCTCATCCCGCCCAAG 88559 27 89.7 32 ............--..........G.... GGTGCCGAAGCGGTACGCGCCCATGGCGGCCT 88500 29 93.1 32 ........................TA... GGAACCTGGCAGATCCGCTTGACCAGGGCGCA 88439 29 79.3 32 ..A.......TT.AC..........C... GTCATTTGGAGCGCCATCTCGCCCGTGGTCTG 88378 29 93.1 23 ............A...T............ CGGCGCGGTCGTGCACTCCGCCG Deletion [88327] 88326 29 96.6 32 ............................A CCGAGCGCGCCGAGGTACGAGCCGTACCCTGG 88265 29 96.6 32 A............................ TAGTCGGTTCCCTCGGTCGTGAGGTTGGACGT 88204 29 100.0 32 ............................. TGGTACGGGATGCCGTCGCGGTACTCGACGGC 88143 29 100.0 32 ............................. GCGACGCTCCTGGAGCAGCAGCGTGCCCAGCT 88082 29 100.0 32 ............................. GGACGCTCGTGGAACTCGTGAGACCGCTCAAC 88021 29 100.0 32 ............................. GGACGCTCGTGGAACTCGTGAGACCGCTCAAC 87960 29 100.0 32 ............................. CTGGCCGAACGCGTCGGCCGTAGCCGCACCCT 87899 29 100.0 33 ............................. GGTCGCGGTCGTCATGCCGCCACCCCCCCAACC 87837 29 100.0 32 ............................. TGCCCGTGGGGTGACGCGCTCGAACTCATCAC 87776 29 100.0 32 ............................. CCGAGGAGGACGACGAGGCCCATGCCGAGGAA 87715 29 100.0 32 ............................. ACCGCGAAGGGCCAGTTCAATGCCCTGATGCG 87654 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 18 29 95.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGATCTCGCCTGGATCCTGGCGGTGGCGCAGCAGGTCCCGGGGGATCCGCAGGTCGTCGACTACGGGGTGCCGGTAGCAGCCGAAGCACGTCATCGGGCGGAGGTCTTGGACCACGAGGTATATCCCGAGCCCCATCACAAGGCTGCGGCTCTGTTGTGCGAGCTGGCGCGAAACCCGAGCTTGGAGAAGCGGAATCTGCTGTTCGCGGCCACGGTGACCGGGGCCTACCTGTCAGCGTGCGGGATGCCGGTGAGCGCTGGCCTGGACACCGTCCTCCCCCTGGCCCGCGCCGCCCGGGACGGTCTCCCGGTGCGCGAGGTCGCTGCTCAGATCAAGACCTGGACGAGCTGACCTTCTCATCGGGTGGCATCGCTCCGGACGCACAGGCCGGCCCGGATGCCGTCGCGACTCTGCTGGTCGACGGCTTCGGGGCACCGGGTGCAGTGGCTTTCCCGGTGTCGGCATCGGTCCGGTCCGCTGGATAGGGCAGGTGCTCTAC # Right flank : CCAGGATTACCGCGACGAAGTGTTTGTCCACGGCCGGAGGTTGCCCCTCCCGTGGGGAGGCCGGGAGGGACGTTCGGGCCCTGCCCGCTCTACAGGCAGGCAGGGCTCGATGGATGCGGGAAACGGGGAATCCCGCAAGACCAACGATGCACCTGATCAGGCCACATAGACAGTGTCATGACTGAAATCAATTCACCACACTTCTCCCCCTCGACAGCCTGACGGGCCGCCCGGTCAGGGGCTGATGGTGAACTGGGCGGCGCCGACGATCGGTGCGCGGCGGCGGGCGGGCAGGGGTTGGATGGCGCGGTCGACTCCGGCGACGAGGTCGGGGACGGGGATGCCGTAGTGGGCGGAGAGCCGGTCGAGGTCGTCCAGTGTCCAGGTGGCGGCACTGAACAGCTTGCGGCTGATCCGGATTCCGGCGGCCAGGTCGGTCTGCCGCGAGCCGCGACGGTGAGGGCTAATGTCTGCGCTGCGCTGGTCATATGCGTACTCCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90284-89761 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819161.1 Streptomyces sp. CS090A Scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 90283 29 100.0 32 ............................. GCGACTGAATGGAGGATCCTTGAGGACCAGGA 90222 29 100.0 32 ............................. GCGGAGTATTACCACCAGCTCGCCGCCACCAC 90161 29 100.0 38 ............................. TCCCGGTACGCGGACGAGGACGAGGACGAGATCATGGT 90094 29 100.0 32 ............................. ACCAGCGCAACCTGACCGGCACCTCGACGGTC 90033 29 100.0 32 ............................. CCCCTCTGCACCGTCTGCAACACCCCCCTCAA 89972 29 100.0 32 ............................. CCCGCCAGGTCCCCATGGCCGACGGGACCCCG 89911 29 100.0 32 ............................. ATCCTGTATCAGCGGCCAGCACTGCTGGAGGT 89850 29 96.6 32 .......................A..... AACCGCTGGACGAACGCCCGGACTTCCGGGTC 89789 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.2 33 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCGGGCGGAAGTCCTGGACCACGAGGTATACCCCGAACCCCATCACAAGGCCGCGGCTCTGCTGTGCGAGCTGGCGCGAAACCCGAGCCTGGAGAAACGGAACCTGCTGTTCGCGGCCACAGTGACCGCGGCCTACCTGTCAGCGTGCGGGATGCCGGTAAATCCTGGCCCGGACACCGTCCTCCCCCTGGCCCGCGCCGCCCGGGACGGTCTCCCGGTGCGGGAGGTCGCTGCTCAGATCAAGACCTGGACGAGCTGACCTTCTCGTCGGGCGGACGTTCAGGCTGACGCGGATGCCGTCGCGACCCTGCCGGTCGACGGCGGGGGCGCCGGGTGGCGTGGCTAGAGATGGCACCTCCTCCTGACACCGGCCTCAAATAGCCCAAGGCGGCACTGAGATGACGGGCGCGCCCTTACACTCGCTGCGCGACGGCAACGAAGCGGGATCCATGATCTGCAAAGAGATGGCAAAGCGTCCGAGTAAGGGCAGGTCGCGAAGG # Right flank : TACAGGCCCAGGGTGTGGCCGGGCTGGCCCGGTGCTCTCCGCGCGAGCGATCCGTTCCTGGCGGACCATGGCCTCGCTGTCCAGACGGATCTGGTGCACCTACCAGCGGAGGACTGGCGTCCCGGTCCGCGGAGGCCATGCCGTGCTGCCATCGGACGACGAGGGAGCCCAGAGGCCCCGGAGCGGGTACAGGTGACGGTGGCCTGCTACCTCCCAGGTCGTCTGAGAGGTGCTCGTGCGTGGCGGCAGGAGCTTCGAAACCAACTGCTAGCTGTTGGTATCAGGGAATAGCTATGATGGTGGGTATGGCAAAGCAGACGAATATCCGATTGGACGACGCGGTCAAGGCGGCGGCCGAGGACCGGGCCAAGCGCCGCGGTCTGACGTTGCAGGGGTACGTGGCTGACTTGATCGAGGCCGATGTGAATCAGGCACGTGCCGCGTTCATGGCCGGCGCTGCGACGTTCCTGGCTCAGTACTCGGACGAGTTCGAGGCGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 92772-91625 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819161.1 Streptomyces sp. CS090A Scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92771 29 72.4 32 .A...T..TA.A...A...GC........ GTCGTCGCAACGTTAGCGAGGAATTCCGCGGT 92710 29 75.9 21 .....A.G.A.AG........C...T... TTCGTCAATGACTACACCGCG Deletion [92661] 92660 29 79.3 32 CA......A...AA.........A..... ACGGAGGCGGCGCTGTTCGCGGCGTCGCTGCT 92599 29 100.0 32 ............................. TACCCGATCTGGGTGAGGGTGGCGCCGATGTC 92538 29 96.6 32 T............................ ATCTTGGTGAGCGGGCCGGGTGCCAACACGGC C [92534] 92476 29 100.0 8 ............................. TCCAGAAG Deletion [92509] 92439 22 75.9 32 -------...................... CGTGTGAGTGCGGCGGCCGGGGTGGTGCTGGC 92385 29 100.0 32 ............................. TCGTCGACGAGGGTGTCTTCGTCAATCCACTC 92324 29 100.0 32 ............................. GTCCTGGCGGAGGGACCGATCATCTGCGGACT 92263 29 100.0 32 ............................. GCGATCAGCGCGGCAACCTTCGTCGCGGTGCC 92202 29 100.0 32 ............................. CCGTACATGGTGTCAAGGCCGATGGTGTCGGC 92141 29 100.0 32 ............................. CGGTGTGCGGGCCCGCCCCCTGGTGGGGCGCC 92080 29 100.0 32 ............................. GCCGGCGAGGGGTCCGTCACACAGGTTCTCCA 92019 29 100.0 32 ............................. CAGTGGCACGAGAACAACGAGGCCGCGTTCAG 91958 29 100.0 32 ............................. CGGCCGATCGGTGACGGGTGGGGCTGGGCCCG 91897 29 100.0 32 ............................. TACCTGCTCGCGGACCTGGGGGCCGAGTTCGC 91836 29 100.0 32 ............................. GTGACGTCTGGGGCGGGCGCGGCGTCGGCCGA 91775 29 100.0 32 ............................. CAGATGGAACCCGATATGCCCGAGACGAACGC 91714 29 100.0 32 ............................. TTGACCAACTCCGGGCCCTCCTCACCGACCCA 91653 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 94.8 30 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AACGCAAGCGGGCTGGAGCCGCTGCACATCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCAGGGTTCCAAGGGTCCTGTTGCAAAACAGAGAGTTCAGCATGCCCGCACGCAATTCGATGGGACGGCTCGAATCCTCGACGCCGAACTGCTTCGCGAGAAGCTAGCTACCGGCATCGGGCGCGGCAAGGCATACGGATGTGGACTTCTCAGCATTGCTCCCGCTCGATGAATTCGACTGTGCACCGATCAGACCCGTATTAGACTCCTAGTCGCAGGGATTCTGCGCAGGGACTTCTATATTTCTCCATGACCACCCAGGCAGGGAAGTGAGACTAAGTCGCCACCAAGTCAGTATCAGAAGGGGGTGTCGCCGTCCGCGTGCGAATTCCGCGAACTGCTAACCGCCCGATACTCTGCGTGACCACCTCCGGTCAAATTCCGCTCTCGCGGAAATCAGCGGAATGACGCGAGGCTCGTAAGCGGAGGCAGCGAAGA # Right flank : CAGGTCACGCTCACCAAGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCAAGGAGATCCGGGGGGCGGGCCTGGGGTGCTCTCCGCGCGAGCGGAGGTGAGCCGATCACGGGCGGTGTCCTCGCGGCCCTCCTCGAGTCCTCTACGCGCGGGCGGAGGTGAGCCGCCCTGGACCCCCGCGAACGGCGATCCCAGCGACTGCTCTCCGCCCGAGCGGAGGTGAGCCGAGCTGGATCATGGGCAGGGTGGCCTGCTCTCTACCAGGTTGTCTGAGAGGTGCTGGTGCGTTGCGGTGGGAGCCTTGAAGCCGATTGCTAGTCGCTGGTATCAGATACTAGCTATGGTGGTGGGTATGGCAAAGCAGACGAATATCCGATT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 104796-106959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819161.1 Streptomyces sp. CS090A Scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104796 29 100.0 32 ............................. CGCCACCCCCAGCGCACTTGCGCCGCGACACT 104857 29 100.0 32 ............................. CGTCACCGCTCCGGCCTGTCGCCCGAATTGCC 104918 29 100.0 32 ............................. CTCGACGGGCGCCGGTCATCTGCGCTACCTCC 104979 29 100.0 32 ............................. ATCGACCCCCGCCTGCTCGACATCGACCGGAC 105040 29 100.0 32 ............................. CTGACGCCAGACCCGCGGCGGGATGAACTGGC 105101 29 100.0 32 ............................. GGAGATCCAATCTTCACAGTCTGGTCACCAAA 105162 29 100.0 32 ............................. CGTGTGAGCGAGCTCGAAGGGTCGGTGGCCGC 105223 29 100.0 32 ............................. GAGGCGGGCGGGGACAACATGACGCCCTTCGA 105284 29 100.0 32 ............................. GCGGCCCCGGCCCGAAAGCGGGCACCACGGCA 105345 29 100.0 32 ............................. CCGCGGGCCGGTCCGCCGGCCAAAGTGCGCGG 105406 29 100.0 32 ............................. CCTCGGGGAGTGCGGGCGCGGCACGCACGACG 105467 29 100.0 32 ............................. TCTCTGTGGTCCGGGGTGAAGACGCAGTTCGG 105528 29 100.0 32 ............................. AAAACGGATGGCCTATCAAGGCCGAGTTCCCT 105589 29 100.0 32 ............................. CGGAACCCCGCGCTCACTCGTTCATGCGTTCG 105650 29 96.6 32 ..................A.......... GCGGACTACCCGAGCACGCTGTTCGCGACGGC 105711 29 100.0 32 ............................. CGTGGGAGGCCGGTCACCAGGTGACAGACATC 105772 29 100.0 32 ............................. CCGCGCAAGGTCCTCCGTCCCTTCGGGGGGCT 105833 29 100.0 32 ............................. TTCAGAGTCCAACCCGGTCTTCCGCACAGGGT 105894 29 100.0 32 ............................. TGCGACTGCTCTACCCGGACGAGGAGATCCAG 105955 29 93.1 32 .....T...............A....... CGCCCGTAGCTCTTTCGGGTTGGTCAGACCCG 106016 29 100.0 32 ............................. ACGACGGTCTTCCCGGCGCCGGTCGGGAGGAC 106077 29 100.0 32 ............................. ATTGAGCCGGGGAGGATCCAGCTGACGTTCTA 106138 29 100.0 32 ............................. CACCACCGCAAGGCCCAGCTCCACCACCTCGG 106199 29 100.0 32 ............................. CCACGATCAGCCACCCCCGCCCGTGAGTACCT 106260 29 100.0 32 ............................. CTGATCACGTCGTGCAGGCCGCTGGTTTGGCC 106321 29 100.0 32 ............................. AGGCGGACACTGGCCCTGGGGGGAGCAAGAGT 106382 29 100.0 32 ............................. CTCTTGAGCCAGTAGGCGACGAACAGGCGGTT 106443 29 100.0 32 ............................. GCGGCCATGCCTGCATAGCCGGCCAGGAGCAC 106504 29 100.0 32 ............................. TACGCCCTGCCCGCTACGGTGAAGTTCGGAGG 106565 29 100.0 32 ............................. TCCCGGTCCACCGGGCCGCGACTCACTGTTCC 106626 29 100.0 32 ............................. ACTGCCCCGCTGCGCTGGCTGGCCGCTGGCGG 106687 29 100.0 32 ............................. CTGGGGCCGTACGTCGCCGATCGAGCAATGGA 106748 29 100.0 32 ............................. CGGTTCGAGCGGGCCTGGGGCTTCCCGCCGCT 106809 29 100.0 32 ............................. TCGACCATCACACCCGTCCTCGCTCTCGTCAC 106870 29 100.0 32 ............................. ATGGGCCCGCCGGTCGTGACGAAGGCCAAGGT 106931 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCCACGCGTCGTCACCGACATCCAGCAACTCCTCGACCCCGACCACACCTACGAAGCACCCGACCCCGCAGAACAAATGGTCGACCTCTGGGACCCCGTCAGCGGCTCCGTACCCGCCGGCATCAACCACGGAAATCAGCCGTGACCCTCCATGCGGAAGAACACCGACCATGTCCTCGATGATCGTCATCTCAGCCACCGCCGTGCCCGACCACCTCCGCGGGGCCCTCACCCGCTGGCTCCTCGAAGTCACACCCGAGCTCTACGTCGGCACCGTCTCTGCCAAAGTCCGCGACGAACTTTGGACCGCCGTTACCGCCTGCACCAACGACGGTCTGGCAGTTCTCGCCCACCCCGACGACAACGAGCAAGGCTTCCAGCTACGCACAGCCGGCACCCGCCGTCGCGAACCTATCGACTTCGACGGACTTACCCTGATCGCCTTCCATCGAGAAGGTCAAGAAATGGCAAACCCCCTCTAACGGTGCAGGTCACGAAGG # Right flank : TTCGTCCACGGTGACGTCCCCGGCCTGGCTACCGACCGGCAGCTGCACGAGACCGTGACGGCCAGGGCGTGGGCTAAGGCGTCCGAGTGGGAGCAGTACCGGGCACGGAAGGCCGAAGCGAAGGCGGCCCGCGCCGAAGCAGCCGCCGCGCAGCGGGACGCCATTGACACCGGGCCCACGTGGCCCGCCGGCCCGCGCCCTGACACCCCTGCCGTACCCCCGGCGGTCTCCCGCCAGGTCTGCCGTGGCGCGGAGCCGGCCGAGACTGCGCAAGCGGGGGCGGAACCAACGCCGGGTCGGCATATTGCCGAGCACTGACGGCACGTCACCGGACACGGTTGTCCGCCGACGGACCAACCACCTGACGCCGGGATGAGACCGCCGCCATGTGCATGGCGTTCGACATCGTGCCGCACGTCGGTGACGGCACTTCGCCTGCGGATTCGCGTAGGGTGGTCGATCGCTGGCGGCAGCTAGTCCATGCCCAGATGAGGGTCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4272665-4271967 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819159.1 Streptomyces sp. CS090A Scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4272664 29 100.0 32 ............................. CGTCGAGCTCTACCCGGACCCGGAGCCCGACG 4272603 29 100.0 32 ............................. CTCAATTTTGCTGAACCTGCCACGGAATCCGG 4272542 29 100.0 32 ............................. GCCCAGGTCCACGTTGCTTGCGTCGAACCAGC 4272481 29 100.0 32 ............................. TCGTAGGGGTCGTCGCTGACTTTCCCCAGGTA 4272420 28 96.6 32 .................-........... CCTGCCAGACCTGGCGTACAGGATGACGGTGT 4272360 29 100.0 32 ............................. GGCAGGATCGCAGGCAGCAACTGGATCAGGAA 4272299 29 100.0 32 ............................. GTCTTCGCCTCGGCGATCCGAGCCGACCAGAC 4272238 29 93.1 32 ...............CT............ AAGGTTGGCCAGGCAATGGCCTTCATCTACTG 4272177 29 100.0 32 ............................. TGCGGGCAGATGCGCCCGGCCCGGTCGATCCA 4272116 29 96.6 32 ........................G.... AGGCCCAGCCGGGCGAGGGAAGAGCGGGCCCG 4272055 29 89.7 31 ..A..............A...A....... GGCATCCGCGCCGCCAGGGCCTCGTGGCACG 4271995 29 79.3 0 T...C...............A...C.G.G | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : GTCTGCGCCCGCGACGCGGACAAGCTGGAGTGCCTGCTCCAGGGCATCGAGTACAAGACACAGGGCTACGAGAACGCCCAGCGATGGATCGACAACAGCCGCAGCCGCCTCACCACCGCGACGGCAAAGCGACTGGCCGACGAGCTCCTGGCCCAAGGGTCTCTCGACTGGCTGCGCACAGCTCTCGGAGAGGGCAAGAAGTAGATCCCTGGGGCGCGGCGGATGTGAAGTCCGGCCGCGTCTGAGGGTTGTGCCTTCTCAGGGTGGGCGAGGGCCTGCGCGTTGTTGCCTTGGGCGGTTTTGGAAGCCCACCCAGGTTGACTGCGCTGCGGGGGGTATCGAGATCTCCCGAGCACTGATGGCGAGCAGATGGCGTAGCTGTGCATCGAGGTAATGAGGGCTGCACGACTTCTGAACGGGGGCCACTGGGAGATATGTCCGTTTCTCAAGAAGTGCGTAAAAACGAGCCTCCGGCCACCTAAACCCGCAGGTCACGAACT # Right flank : CTCTGGGTTGGTCTTGCTCAGCGGCCTCTGCGCCCGGCAGAGACGGGCAGGCGGGCGTGCCCGGCGCTTGGGGCCTGGGGCTTGGGGCTTGGGGCTTGAGCTTCGGGCGACGAGCTTCGGGGGCCGGTCGGTTCGCTCTTTCGGGGGTACGTGGGCGGGGTCCGGCCCGAGGCTCGGGTCCCGGGACGCGGGTGTCGGGATGCGGGCTTCGGGGTTCGAGCGCCTTCTTTAACTGGCGGGTGGGATTGGGGGGTTAGGGGAAACCTCCCCTACCTCCCTGACCCCGTAACGGCGAGCAAGTATGACTAATCGTGACAGCTTGCGGCGGAGCGTCACGAGTGCTTACGGTTCGAGAACTAATCGACCCCGACGCGGTGTTGGAAGCACCAGGCCGGGGTCTGACCGCAAGATCGATCCCGTGGAAGGCGATCCCGTGGCTATCCAGCACACTAGCTCTGCCCTGCCCGCCCCTGCACGCTCCGCCCCGTACCCGATGGCGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //