Array 1 710132-709203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033599.1 Pasteurella multocida strain CQ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 710131 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 710071 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 710010 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 709950 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 709890 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 709830 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 709770 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 709710 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 709650 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 709590 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 709530 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 709470 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 709410 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 709350 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 709290 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 709230 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1630918-1627650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033599.1 Pasteurella multocida strain CQ2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1630917 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 1630857 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 1630797 28 100.0 32 ............................ GGATGGATTGCTTCTAAGTAGCCTTTGCCTTC 1630737 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 1630677 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 1630617 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 1630557 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 1630497 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 1630437 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 1630377 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 1630317 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 1630257 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 1630197 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 1630137 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 1630077 28 100.0 32 ............................ GCTCCAGTCGCTTTTAGTTGCGCTTCGGTGCG 1630017 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 1629957 28 100.0 32 ............................ TCGCCAATATAAGCATTAACATTCACATCAAC 1629897 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 1629837 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 1629777 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1629717 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1629657 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1629597 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1629537 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1629477 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1629417 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1629356 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 1629296 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 1629236 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1629176 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1629116 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1629056 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1628996 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1628936 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1628876 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 1628816 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 1628756 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1628696 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1628636 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 1628576 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1628516 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1628456 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1628396 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1628336 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1628276 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1628216 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1628156 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 1628096 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1628036 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1627976 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1627916 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1627856 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1627796 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1627736 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1627676 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //