Array 1 548227-549206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 548227 37 100.0 33 ..................................... GCTGCAACCATACTCTTTTGCGATGCTTCTTGT 548297 37 100.0 34 ..................................... ATTGGGAGGGGCGGCACTTGAGAACATTATTCTC 548368 37 100.0 36 ..................................... TTAATCTCAAGCCATATAAGTAAAAATAATACCCTG 548441 37 100.0 33 ..................................... TGGATCGAGTGCAAGTGATCCGGCTGGTTTTTG 548511 37 100.0 35 ..................................... ATCAAAACGGTGTGCTGCTATCTACTTTCAAGGTA 548583 37 100.0 35 ..................................... GTTGTAATCAACTTGGTAAGCTTTCCCAACTGCGA 548655 37 100.0 35 ..................................... ATGTAAAATAACCTCATACAACACATTAGACGCAG 548727 37 100.0 38 ..................................... TATTTTGAGGATATCAACCCTTCAATGCTGGTGGTAGA 548802 37 100.0 39 ..................................... CTGGTAAGGATGAACGGCACTTTATGCCGATACCAGTAA 548878 37 100.0 34 ..................................... TTCACTGTGCCGCCCGGAGCTAGCATCTCAAGTC 548949 37 100.0 35 ..................................... ACTGCACGAATATTTGAATGTTTTTGTGTGGGATA 549021 37 100.0 37 ..................................... ACCCAGGGAGTGAGACAAAGTATGTACGGGTAAAAGG 549095 37 100.0 38 ..................................... GATTTTTCTATCAACTCAAAATCTATAGATTCCAATTG 549170 37 94.6 0 .......................C........T.... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.6 36 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCTTTCATCATCTCTACCTTAAATTGGCGGAAACTTTATTGTTGGTTATTAGTACAGTAGTACCGACAACAAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAATGTTTCTTCTGTGTGGCTGTTGTCAGAAAAAAGCCGCCTGTATTGGCAAAGAATAAGCCACGAGACTAAACAATGTTCTATATTGAGTTCCTTTCTGGCTAGGTTCCCATATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTAAAGTCCCTAAAAAGTGCTTCTATTCCAAGCACAGTAAGCCTTTCAACCCATTAGTTACCTAATCCTAATCCGCGCACTCTCTGAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCCCTTGAATAGCGCAACTGTACCTTGAAAATTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : CCAATGAAAAAAGGGTGGACAAGTAGCCCACCCTAAACCATTATTTAATTAGTATTACTTGACGGGTGCTTCAGTAGCAGACTTACCAACAAGCATTGCGGTATTTTCGTCGCTTTCGAGGATACCGAATTCAATCAGCAACTCTTCTAACTCTTCCATCTCAATAGGAGTGGGGACAGTGAGCTTGTCGTTGTTGATAATCTTGGTAGCCAATGTCCGATATTCGTTACTTTGATTGCTGTCAGGAGCGTACTCATTAACAGTCATCCGGCGCAATTCTGCGTGTTGAACGATGTTGTCACGAGGTACGTAATGAATCATTTGGGTGTTCAAACGTTTTGCCAAGGTTTCGATTAAGTCGATTTCCCGGTCAACGTTACGGCTGTTACAAATCAAACCACCCAAGCGCACGCCGCCAGTGTGAGCATATTTGAGAACACCACGAGCGATGTTGTTAGCTGCATACATCGCCATCATTTCACCAGAGGTAACGATGTAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 2177966-2178223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2177966 37 100.0 37 ..................................... TGCCTTCGATCGCTCCTTAGAAGTGCGGAATTTGTAA 2178040 37 100.0 40 ..................................... GTCCTTGGGCTTCTGTTTTGGGAATGGCAAAACCGTGCAA 2178117 37 100.0 33 ..................................... TCTCAATCGCGCAGAGTTTAGCAAGCATTACGG 2178187 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 37 CTTTCAACCCACCCCTAGCCGGAATGGTGGTTGAAAC # Left flank : CGTTACCGATGCGCTCACGCTGAGGTGCTTTTACCCGCAACCAGTCTGGTTTTACAGTCACAATCCGCTTTTACCACTAGAGTTATACAAATTTAATCGTAGCAAGCAAAGCCTTGGGTGAAGCGATCATATATATAGATGTAATTCTGTCATTTGGCACGGGTTGTGATATTCTTAATTTACAATGCCATTTTTATAGCGGGATGTGGCGCAGCTTGGTAGCGCACTTCGTTCGGGACGAAGGGGCCGCTGGTTCGAATCCAGTCATCCCGATTTTTTTTTGTAGAGCGACAAATTATTTGTCCGTGGCGACACATTATTTGTCAAAACGCTAAAACGACAAATTATTTGTCAATCTCTTTCCAGAGATGATTTGCCTAATTGAAGTCGCCTTGATCTCACTATACACAGTAGTGTCGGAATTATCCCGAACGAAGTGCGCCTTTCAACCCTCCTAATTGAAACAAATATCTCACCTACCTAGTAACAACAAAAATTTG # Right flank : CCCCTGCCGTCTAGACCCCTTGCAAATAAAGCTTTTCAGATACAAATTTGGCATATCCCTTAAAAAGCTTCTTTCGTCTCGCATCAAAAAACTAAATCAATTGACACACTAGTCTCTGAAATTAAGACATCACAAGGGTTTTAAAGTTTTGGCGGGACTCCAGGGATTTTGCCCCCGCTTTGACACGCCAAAAAAATATTTTGGAAGGTTCCCCCGATGAAGGGGGTGATTCAGTAGCCACCACTGTAGTAATCCACACCGTTATGAATAACGGCTACGGCTAAAAGCCTTACTCCTTATTGCTGGGAGCGCACCTATCCTATCTATAGAATTCAGAATTCTACAGATGGCAGCATCAGAAGCGGGCAGCTACCAGGGTCAGAAAGCATGACAGTCTGACAACCGCCAAACTAACCCAGATTTATCACAGCACATTGGCTCAAAAGAGCATGAACTGCGGCGCTGTTATAAAAATATTATATTGTCAAGGTTCGGATTAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCCCTAGCCGGAATGGTGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 2820100-2820713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2820100 37 100.0 35 ..................................... TTATTCAGATAACTATGACCAAATTACGCTGTCTT 2820172 37 100.0 37 ..................................... GCCAAATATTGCACACAGGATAAGACTTACATTATTC 2820246 37 100.0 34 ..................................... TTGTGGAGCAACGATTGATGGGAGCGATTGAAAC 2820317 37 100.0 35 ..................................... CTCAGAGAGAGAATCATCATGTCGGCTATTTCTTT 2820389 37 100.0 36 ..................................... CCTTTGAGGGTGTTTGCAACAAAACTTTACCTAAAA 2820462 37 100.0 35 ..................................... AATTTAGAAGGACATTCTAATAGTTTTGCCCTTTC 2820534 37 100.0 35 ..................................... CCAACAATTACGATTTCACGAGAAATTTCAATTGG 2820606 37 100.0 34 ..................................... AGTCTACACTAACACTTCTACCATATCCCCTATA 2820677 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 99.7 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCCTTCTTTTTCGATCCAAATTTCGATGTAGAAGTGAAGCCCATCGAATTAGATAATATAGTAGCGAATGACAATATAAGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTACGTGTTAAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACAGTATTATAGAGTTTAAAACCATTTATTCTTTGCTGAGTCACCTTTTCGTTAGATTCCTCTAGTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTACAGTCACCAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCTCACTAATCACCTTATGCTCATCCGCGCAATCTCTGAAATGTTTGCTATAAATGGGTTTTAGCTTTCAATCTGTCTCGGCACTCTTTCCAAACGAATTCTCTAATGCTATGATTGCTCTTGAACCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGCTTCAGGCTCCCGCC # Right flank : CTAGCTGTTTCTACTTTTTGCAATACCTTACGTTCTATATTGAAACCCAAAAATTGCTGGTAATACTGGGGAGGGAAGCAAAAATGTATGAGTCAATGGGTTTATAATTGGAAACTGTGACTCAGCGAGAAGTTTGATCTAAGGAATACCTGGCTAAAATCTCCTTCCAAGGGGAGATGCCAAAGGCGAACGGTGACAACTCATAATTGGAGCGAAGCGACCGGTGGGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGCGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAGCATCTAGGTTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACAGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGCGAAGCAGGGTTTCGCCAGATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCCACCGGTGGAGGCATTGTATTACGGCGAGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 5598075-5599265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5598075 37 100.0 36 ..................................... GAGGCTATTCAATTCAACGGACTAGATAGTTATTTA 5598148 37 100.0 31 ..................................... GAAAGATTTCCCCCTATTCTTAACTCTACAG 5598216 37 100.0 35 ..................................... TCTTGGATTCTAATTGTTTGCGAGTGTAGACTAGG 5598288 37 100.0 35 ..................................... TAGAAAAAGACTACCTATCAGCCTGTGCAACGTTT 5598360 37 100.0 39 ..................................... AGCTAGAGTTACTCCTTGATTTGCTTGACTATCGCCGGG 5598436 37 100.0 34 ..................................... GTGTGGTTTGTGGCTCTACTTCTACCCAAGTTGC 5598507 37 100.0 36 ..................................... CATCCTAAGTATTTGGAGGTGATTCACCGTGCAGAT 5598580 37 100.0 35 ..................................... TTTTGTTTGCAGCCTTTTGGTTGATAATATTTCTT 5598652 37 100.0 35 ..................................... GATTCAACGTAGCGACGCATCCCATTGATGCGATT 5598724 37 100.0 35 ..................................... GGGGGGATTGGTATTCTAATACCCTACACCCCCTC 5598796 37 100.0 33 ..................................... ATCTATCAACACGTGGTACTATATCGCAATAAC 5598866 37 100.0 34 ..................................... CTGTAGAAGATGAAGGATATCCGGCGCTAGGGTT 5598937 37 100.0 35 ..................................... GGGAGATCGCCCTTTACAAAGGCATTTACAAGAGT 5599009 37 100.0 35 ..................................... ATTGTACTCACAGGGCATTCCTAGCAACATTTCGG 5599081 37 100.0 36 ..................................... TTTAATCGGGCTACATAATCCCAGAGGTGGGCAGTC 5599154 37 100.0 38 ..................................... GAACATCCCCAGGATTTTATCAATATAAATATTCAAAT 5599229 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 99.8 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AAGAAGGTGTGGTGCATTATGGCGTACCTAATATGCCAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAATTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCTAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCGGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTCTGTAAGGATTAGGTGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGATGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGGCACTAGTATTTTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCCTCTAGCCGAATCACAATTCATCGTGTTATCATTTCAACATTCGCGCAACCGAACCTTGAAAACCAAATAGGACAAAGCTTTCAGAAGCCAGCG # Right flank : CAGTGCGACTCATTCTAAAGTAAAAAATATCAATAGATATATAACTTTAGGTGAGAATAACTTGGATAAAACCTAGGAAATTCGATAACTAAGTAGGTAGGTGGGAAAATTTACAACTATGTAACGAAAGTTTAACCAGAGCCATTAGAGCCAAATTTAATACGTTTTGTACTGTGGTTGGGGGCTTGCAAGAAAATAAAATACCAGTCATTCTAGAAGAATAGGAGGCGCGGATCTGCCCGCGTTTGCTCTGAATTTCTAGAATTGGAATCACAGGGTTCATGCTTACCGACACCATAAAATCTACCTTCAAAGATGCAGCCAAGAAACTAACTGGCAGCTGTAAAAGAGACTTCATGGCAAAAGTTACTGAAGATTACTTCGATAGTTCAGCACGCATTGCAGAAACAGTTTTAGGATGGAATCGCTCCTGTGTACAACTTGGCTTGCATGAACGGCGGACAGGGATAGTCTGTGTGGATAACTATCATGCAAGGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 5 6058705-6057793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 6058704 37 100.0 35 ..................................... CAAAGTCAGTCTGCACCAATATTCGTGCTTAATTT 6058632 37 100.0 34 ..................................... CGAGTTTTATCTGCCTATCAATTTATTCAAAAAA 6058561 37 100.0 38 ..................................... TTGCAAAGGGTCTATATAAATACTATTAGGCGCGTTGC 6058486 37 100.0 37 ..................................... CATTCCATGCGCGAACTGAATCAAACCTATAGTATCT 6058412 37 100.0 35 ..................................... TTCTTACCTGCATTGGCAAGCTTGCCACTACTTCT 6058340 37 100.0 35 ..................................... CCAATCCTTCGTAGTATGGACAGGATACAGGTAAA 6058268 37 100.0 34 ..................................... AAGCAGTCCTTTGTTTTCTAACTGTTGAACTTGG 6058197 37 100.0 31 ..................................... CACCAAAGGCAAAGATATTTACGCCTATAAG 6058129 37 100.0 43 ..................................... CTTCCCGTGTTGCGAAGGATGGAGCATTGATTACAACATTTCC 6058049 37 100.0 36 ..................................... CTTCCCGTGCCACTTCTGGCGCGATCTCAGCAAGCA 6057976 37 100.0 39 ..................................... CAGAGCATCCCTACCAACTTTGCCAAATCCCTTGGGATT 6057900 37 100.0 34 ..................................... GAAACCTTAAACCTCGACACAATACACAGCATTT 6057829 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 100.0 36 ATTGCAATCAAATAAAATCCCTATTAGGGATTGAAAC # Left flank : GCAGAACTCAATCAAGTTTCTGCAACTCCTACCCTTGTCAAAGTTTGGCCGCACCCAATTCGGCGAATCGTTGGAGAGTTGGATCATGTAGAAAAGATTTTACAGATGTTAGCTGCTAAGGAAAAATTTTAAGTTTTATAACGAAATTGGAGCGTTAAAAGTAAAATGCAGAGGTTTGAGAGGTGGCAATTGTTTTTGCTAGAAATCAAAGAAAGTCTGTAGTAAGCTCATGGCTCGTGAACCGCTTTGCAATCAGACTAGTTTTTTTGCCAAGTGCGCGAATGGGTAGGTGTTGGTGAAGAGGTGACTACAAACATGGCTGAATTGCCGTGTATGCAAAGACTTGACGACTGGAGAATCTTGAAGACATCCGCGCACCTTATGTGGACTGACTTTCAGCGATTTTCGTATGACACATTGCCACTCTTCATGTTATGATTTTTCTATTCGCGCTCTTGAACCTTGAAAACCAAATAACACAAAGCTTTCAAATGCCAGCG # Right flank : AACTGTCGCGGGCTTGACAGTAAACACTACTAGTAATCCCACATTTAAATTGCATAAGCTGGGCGGGCAATATGACCGCCCCACAAGAGCTACGTTTAATTAGGTTTATGCAATTTAGATGTTTTTTATCCCTCTTGTGCTTAAAAAGCGACAGCTTGGGCTGTCCCCTTGAGATGGATTATTGTATAAGTTTGTTTCTGCCCTTGGTTGAATTGAGGAATCGTAGAAAACCGATTTAATGTTGTGATTCCGTTAGTTACAATTTTGACTTCGTTGCTATATCCCAGGTTTACATGGGGGATGAGCAAGCTAAATGTGGTGAAACCAGTATCTACTGTCTTTTTAATAGTCACAGTCACCAGTGTACCAATTTCCATTTCGACAGTACGGATCTCATCTCCCTGAAAGTTTAATGTCTGTTTCTGATCTTGATAGTTGAAAAGGGGCTTGCCAGTAATGCTTGATGCTGAGTAATTAATACTGACTTTTTCACCTTTAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAATAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 6 6406494-6407581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 6406494 37 100.0 34 ..................................... AAGTTAGCTGGTGGCATATATCCAGGGCCATATA 6406565 37 100.0 35 ..................................... AAGGATTTTCGGATTGCAAATACTAGGATTTATTT 6406637 37 100.0 35 ..................................... AGTATCTAACAGGCTCAAGAACTTGGGAATCAAGC 6406709 37 100.0 35 ..................................... AACATCCCAAAATTGATTGGACATGATTTTATTAA 6406781 37 100.0 33 ..................................... GCATAAGTTTACCTAGCCTGCCTGATATCGCGT 6406851 37 100.0 37 ..................................... GCGCCATTGTTCGTGATTGCATAATCGGGATAACCAA 6406925 37 100.0 37 ..................................... GCTAGCTTCTTCTGGTGCTGTCGGCATCGGCGCACAC 6406999 37 100.0 34 ..................................... CAGCTAACACGTAGTACCCAACAGGGATAGCCCT 6407070 37 100.0 33 ..................................... CACAGTTATTGCAGATGTAGAAAAACAAGCAAC 6407140 37 100.0 34 ..................................... TCATAATCATTAAGATAATGAGCGACAATTTGGG 6407211 37 100.0 32 ..................................... TACGCCACTTGCAAGGAATACCTCAAGCTTGC 6407280 37 100.0 35 ..................................... AGAACTGAATTGGAGCAAACTTGCCAGGATATTGA 6407352 36 86.5 158 ............................C.A.-.C.G TTCAGTTAAGCATCTCTTTCTTCTCTCTGCGTTCTCTGCGCCTTGGCGGTTCGTTAAAAAAACGACTTTGGTAACAGAGTTTTAGCCTTAACTGAACCGTATTGCCCTATCAGGGATTGAAACTATTCCAATGCGAAAACCTATCAGAGGGATACGTA 6407546 36 86.5 0 .........A..C...........T....-......T | ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 14 37 98.1 44 ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTCGATTCTCAAGTCTTATGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCTACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATTAAACCCGATACCGATAGCGTTCGTTTTTATTTTCTCTGTGGCTGCTGTCAGCGAAAAGTCGAACGTATTGGCGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTCTGTATTTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGGTCTAAAAAAGTGCTTCTATCCCAAGTACAGTAAGCCTTTCAACCCATTCTTTACCTAATCATCATCCGCGCAATCTCTGAAATGCTTATCAAAATACGATTTCAGCCTTTAAATTTTCTTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCAGCGTCCCGCT # Right flank : TAGTTGCAACGGCTACCTGTCCACTGTCCCCTGTCCCCTGCCTCCTTTAATTTAGCTTAACGGTATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCCGCTTCAATACATTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCTGGTGTATTTTGTAACACGTTAATCCCCTCTCTGCCGTTTTCAGCGTATAACACTTGTATTTGATAACGCTCCAGCATACTTGTCAGCGCGAAAATATTACGCACATCGTCGTCTACAATTAGCGCTTTCTTGCCAGCGAGTAAGTAATCTATGGAATGCAATTGTTCAAGTATTTGTCGTTTGGGTGCAGGTAAATTTGCCTGGACTCG # Questionable array : NO Score: 8.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 7284191-7285017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040281.1 Nostoc sp. C057 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7284191 37 100.0 35 ..................................... AAATTAGTGTAGAAGAAGCCATCCGTCGCTACAAC 7284263 37 100.0 32 ..................................... TGAGAATTTTGCTCTGCTTAATTTGAGTAAAA 7284332 37 100.0 34 ..................................... GTCGAGGTTGAGTGGGAAAGATTCTGAGAATATC 7284403 37 100.0 34 ..................................... CATGAACACATTGGGATTAAAGTTGTCTAGTACC 7284474 37 100.0 34 ..................................... AGCCTTGGTGGGGGATACAAGTACAATCGCTCTT 7284545 37 100.0 34 ..................................... AATTTGCAGAAAATTTCTGCTTTGGGCCGATAAC 7284616 37 100.0 37 ..................................... ATTAGATAACCCTCTAAATCTGCCTCATGCTCGGAAA 7284690 37 100.0 38 ..................................... GGAAGTCTCAGAGCGCACAACACACTATGAATTGCCAT 7284765 37 100.0 35 ..................................... CTTTTTGAAATGGGAACAGATGCGGATTGAGTGCG 7284837 37 97.3 34 ....T................................ TCTTTGATAGGTTTGTCCCTCACAATCATTCCAC 7284908 37 94.6 34 ...................TT................ TGTATTTTATCAATTTCAGGGGGAAACAACTCTC 7284979 37 97.3 0 ....................................A | TG [7285010] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.1 35 ATTGCAATTATCTTAAATCCCTATTAGGGATTGAAAC # Left flank : CTCTACTGTTCATAGAATTAACAGACATGATACGTAATTCTTCGCTGGAAAGGGGAACGAAAGAGGTTTTGATTAAAACAGCTTTTAGAGAGTTTGCTTGTGCGATAACAGACTTTGAAGACGTTGGCAAATAAAGTTAATCATGGGGGTGCTGGTATTCTGTAGATGTAGCCCACCCCGGCATCACTCTAACTAATCGAGTAGGGTATTTATAAGTAAGCAGCTTTCCAATCAGATTAGTTTTTTTGCTAAATGCGCGGATGGGTAGGTGTTGGGGAAGGGGTAACTAGAAAAATGGCTGAACTGTGCTATATGCAAGAACTTGGGAGCGATGCCTGCGGCGGGCTACGCCTACGCATTTCAAACCATCCGCGCACCTTATGGAGACTAGTTTTCAGCCATTTGCCTCTAGCAAAATCACAATTCATCGTGTTATCATTTCAGCATTCGCGCAACCGAACCTTGAAAACTAAATAGGGCAAAGCTTTCAGAAGCCAGCG # Right flank : ATGAAAACACAGATGAACACTGATAATTTATCTGTATCCATCTGTGATTATCTGGTGTCAATACCTGGGAATTAAACCATTAGACTTGTTGTATTTCGGGACGACCATCTTCAACCACAAATGAAGCCCGCTTACTAATCGTGCCAAATGGGGTTGTGACATTTGACATAACCAAATAGTCTGTCTTCCAGTTTGTGGGAGTCAGGGAACAACGAACATAGCCCCGTTGATTATTGAAAAACTTAATGTGTGGGTTATCGGGTAAATAAGCTTCAACTGCGGGGGTGGTGTCTGATCCATCTCCACCGGAGCTAATTGAAGAACAGACGAATTCACTGCCAACTGTGGCGGATTGTGGATTATCAAAGTTAGCTTTGAGATTCATCGCCCAGTGGGAATGTACATCGCCTGCTAAGGATACTGGATTAGAGGGCTGGCGCTGTCCGAGGAAAGCCATGAGGCGATCGCGCGAAGCCACATAACCATCCCATTTATCCATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTATCTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //