Array 1 47044-55946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSWZ01000001.1 Rathayibacter toxicus strain FH81 FH81_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 47044 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 47105 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 47167 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 47231 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 47292 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 47354 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 47416 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 47477 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 47539 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 47600 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 47661 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 47722 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 47784 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 47845 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 47906 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 47967 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 48028 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 48089 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 48150 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 48211 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 48272 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 48334 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 48395 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 48457 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 48518 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 48579 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 48640 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 48701 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 48762 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 48823 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 48884 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 48945 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 49007 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 49068 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 49129 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 49190 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 49251 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 49312 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 49374 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 49435 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 49496 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 49557 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 49618 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 49680 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 49741 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 49802 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 49863 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 49924 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 49985 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 50047 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 50108 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 50170 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 50231 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 50292 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 50353 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 50414 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 50475 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 50536 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 50597 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 50658 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 50720 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 50781 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 50842 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 50904 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 50966 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 51027 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 51088 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 51149 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 51211 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 51272 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 51333 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 51394 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 51455 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 51516 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 51577 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 51638 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 51699 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 51760 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 51821 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 51882 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 51943 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 52005 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 52066 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 52127 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 52188 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 52249 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 52310 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 52371 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 52432 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 52493 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 52554 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 52615 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 52676 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 52737 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 52799 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 52861 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 52922 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 52984 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 53045 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 53106 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 53167 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 53228 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 53289 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 53350 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 53411 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 53472 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 53533 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 53594 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 53655 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 53716 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 53777 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 53838 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 53899 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 53960 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 54021 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 54082 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 54143 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 54204 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 54266 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 54327 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 54388 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 54450 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 54511 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 54572 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 54633 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 54694 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 54756 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 54817 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 54879 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 54940 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 55002 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 55063 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 55124 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 55185 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 55246 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 55307 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 55368 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 55429 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 55490 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 55551 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 55613 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 55674 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 55735 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 55796 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 55857 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 55918 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 146 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //