Array 1 1819216-1818598 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576033.1 Propionibacterium freudenreichii isolate PFRJS4 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1819215 36 100.0 34 .................................... AGGCTTCAGGTCCGGCCTCGGCCCACAGGATCGG 1819145 36 100.0 36 .................................... CAGGGCCTGATCGAGCTTATTTATCGAGCAGGTGCC 1819073 36 100.0 35 .................................... CCTGCACCGCCGCTCACCTCACGCCATTTCGACAG G [1819056] 1819001 36 100.0 39 .................................... GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 1818926 36 97.2 37 ......................A............. TCGTCGTGGACGCCGGCACGTCCATCTATCTGGCAAA 1818853 36 100.0 39 .................................... ATGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGGGTG G [1818836] 1818777 36 97.2 37 ..............................C..... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATT 1818704 36 97.2 35 ...................................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 1818633 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 99.1 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : GCCATCGACAGGTGGCCGACGACGATCCCGACCAGACCCCACCGCAGGCCGGCGCGGGAGATCTTGGCCCGCGGCGGCGCCGCAGCGGTGGTGTCCTGACGCCACACGTGCGAGCACTCCTTGCAGCGGTAGCGGCGCACGGTGAGCACCAGCGTGGTAGGGCGCCACCCGAACGGCTCGTGCGCCAACTCCCTGCTCACCGTGTCACGGGGCACGCCCTGGCAGCCGCACCGCCTGCACCAGTCGTCCGGCTCCACGACCCGGCACGCCAGCACGGACCGGTCAGGCTCGAGCAGCTGGCCGGTGACCTCCAGACCGAGGCCGTCGAGGCGGGTGAAGGTAGTCAGGTCAGGGCGCGTGAAGGTAGCGTCAGGCACGTCGAGGTCTTCCGGACGGGTTGTGTGAGAACTCCCATCATCGGAAGACCTCGACCCTCACCCCGACACCGACGCGCCGCCCCAGGTCGCACCACAGCTACACCCTCATCTGTGAAGAGCCAC # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1823698-1823162 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576033.1 Propionibacterium freudenreichii isolate PFRJS4 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1823697 36 100.0 36 .................................... CATGAGATTGGGACACTTTCCTCCAGCGTTGTTCTG 1823625 36 100.0 34 .................................... CGCGATGTCGCTCACATTGACATTGGCACATGGA 1823555 36 100.0 35 .................................... TATCCGCGCCGACACCGGAAGACGTAGCTGTGGTT 1823484 36 100.0 36 .................................... ATTGGGGAGGCAGCACCACCACCGCCCCACACGGCA 1823412 36 100.0 36 .................................... GTCATCATCGGCTGGCCGTTGCTGAACGTTCTCGGT 1823340 36 97.2 35 ....A............................... TGCGACACCGATTCGCTGCACCTGATCACCGACGA 1823269 36 91.7 36 .......................AA......A.... AGCCCGATCAGATCGCAGAGGACCGCACCCTACGCA 1823197 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 98.3 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CACGATGCCCTCCAGCGCCCACCGCATCCCGCGACGAGACAGCTTCGCTCGCGCGGGCGCCGCCGCGGTGAGGTCTTCCCGCCAGGAACGCCCGCAGCCGGAACACTTGTATCGGCGGATCCGGACCAGCAGCGTCGTCGGGCGGTGTCCGAACGGCTCGTGCGCGAGCAACCGCGTATCAGTCCCGCGAGAAAGCCCCTGGCTGCCACAACCCCGACACCACGGATCCGGCTCCGCAACCCGGCACTCGATCACCGCCCGGTCCGACTCAAGACACTGCCCCACCGCGACGAGACCGAGCTCGTCCAGTCGGCAGAACACGGTCAGATCAGGGGTCGCAAAGGTAGCGTGGAGCACGTCGAGGTCTTCCGGCAGATGGTCAGTGTGAGAACTTCCATCATCGGGAGACCTCGACCCTCACCCCCGCAACGACGCGCTCAACCACCTACCCCCTCAACTGCGAAGAGCCACTTAACCAGACCAGCCGCCAATTCCTGAAC # Right flank : TCGTTGAACATTCTAGAATTGGCAATCCCGACATGACATTGCGGCTCTTCACAGATGACGGTGTAGTTCGGTTCTGAATCCTCCGGTGTCCAGTAGGGCGCGGATGACGTAGTGGGCAAGGTTGCGGAAGCCCAGCGCGGTGCCGCGGAGGTGCTCGAGTCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGGTGGTCGAAATAGGCCAGCACATCGAGGGCTCGGCGTTTCAGTGTCCGGCCGAGGGTGATGAGTTCTTTGAGCTGCTTGGGCACCCCGTCGGTGAGGTCGTCGATCACTGCCTGCAGTTCTCGCTTCCCGGCAGCGCGGTCGGGATGGCGGTAGGCGGCGACGATCCGCTGGTAGACGTTCCAGGTCGCCTCGACCTCGACGTGCTCATCACTGGCGAACACGGCCTTCAGGCGGGTGATCTGCTTGTCGGTGGGCAGGTCAGCGCCGGTGTGCAGCACGCGGCGGATCCCGTAGAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 1825170-1827746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576033.1 Propionibacterium freudenreichii isolate PFRJS4 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1825170 36 100.0 36 .................................... GCGAATGTCAGGGATCGGGTCTTGAACGCCACCGAT 1825242 36 100.0 34 .................................... CAGCCCGCAACCGCTCGACCTCACTCGACGCCAT 1825312 36 100.0 39 .................................... ACGAGCCAGCGAATACCACTGGCCGCGATTGGGGTTGAT 1825387 36 100.0 36 .................................... GGCCTGCGCCTGGGGGTCGCCCCCGCGCATGAAGTG 1825459 36 100.0 35 .................................... ACCTGGACAGTGCGGGTGATCTTGCCACCCAGCTT 1825530 36 100.0 38 .................................... ATGCGCGCATTGGCGCAGAACTTGAAATGCTTGGACGT 1825604 36 100.0 37 .................................... AGGCGCCTGTGGTGACACCGCGATCACGAGCCAGCGA 1825677 36 100.0 34 .................................... CGACCTCACTCGACGCCATGCACACACCCCACAG 1825747 36 100.0 38 .................................... AACGGCAAGGAGCAGATCCTCGCCAAGAACTTGGCGCA 1825821 36 100.0 37 .................................... TCGAACGCTTACTCCTGGTTTCCACGGGAACCTCGCG 1825894 36 100.0 38 .................................... TTTGCTTACTCAGGGCTTGTCTCTTTTGGTCGTTTTGC 1825968 36 100.0 39 .................................... TCCCCGCACGATCGCCGGAATGGTCACCGCTTCGGATGC 1826043 36 100.0 37 .................................... TTATGGCGCTGCTTGGGACGCCGCTCAGATCGCCGCT 1826116 36 100.0 34 .................................... CGTTCTCGTGCTGAGCTACGGCATACGGGGTGTC 1826186 36 100.0 38 .................................... AGTCGGGTGTAATCATTGACCTCCGCACCCGGCAAGCA 1826260 36 100.0 34 .................................... CGTCCATGTGTGAGCGAACCCACGCATCCTGACT 1826330 36 100.0 35 .................................... ACTTCGAGGATGCCGGCGAGGAAGCCGGTAGGAGT 1826401 36 100.0 35 .................................... GCGATCTCGGCGCTGGTGGGGGCGTTCTCGATTGC 1826472 36 100.0 37 .................................... CAGATGAGCGAACTGGATTTTTACCAATTGCTAGATG 1826545 36 100.0 38 .................................... GCGAGCCAATCGACATCGCCCGGAAGGTTAGCGAGAAA 1826619 36 100.0 40 .................................... CGGCATCATGTGATCACCCGACCCATGACCTGCTCCCACG 1826695 36 100.0 35 .................................... CGTTACTCATTGTGTTTCTCCTAGAACTTTAACGT 1826766 36 100.0 38 .................................... GGTGAGAATCCCGTCGCCCGTACCGGGCGCGAGCGTGA 1826840 36 100.0 38 .................................... GGTCATAGGTCGGATTATATCCGCCCCATGTGATTAAA 1826914 36 100.0 38 .................................... CTTGATATTGGGTCTGAGCTTGAGATTCAAGATATCAA 1826988 36 100.0 34 .................................... CTGTGCAGTCCGTCTCCACCGTGGAAGCCGACAA 1827058 36 100.0 34 .................................... AATCCGGACCAGTAATGTCAGGAATCTTGATCTT 1827128 36 100.0 37 .................................... CACGCGCTCAGGGTGAGGGCCCGTGGGATGGCTGGGT 1827201 36 100.0 36 .................................... CATTACTCATCGTGTTTCTCCCTAGAACTTTAGTGT 1827273 36 100.0 38 .................................... CGGCTCGTTCACCGCATCCTTCGGGGGTGTCGGGGCAG 1827347 36 100.0 37 .................................... GGCAGCCGCGATGGCTCTGGTTGTCTTGCGCATGCAA 1827420 36 100.0 37 .................................... TTCAAGAATTTTGTTGAAACTTTTGTCGATTTCTACA 1827493 36 100.0 36 .................................... CCGAATCGACGTAGACAAGCCAGGTCTTCTTTCCGG 1827565 36 100.0 38 .................................... ACGCCCCCAGACAAAGCCGAACCTAGCGGAACTTGACC 1827639 36 100.0 36 .................................... ATTGCCATTCGCTGCATCCCGCCAAGGGTGTCGGTA 1827711 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 36 36 100.0 37 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : TCGGGCGCCGCGGAAGGAAGGAGGATCCGCTCTACAAGGCCCGCCGCACCCTCCACACCGGAGCCGGGCTGCTCACCGAGAAGCAGCAGACCCGCCTCGAGGAGCTGTTCGCCGACGAGCAGCATGTCGAGGTCGAGGCGACCTGGGGCATCTATCAGCGGATGGTCACCGCCTACCGGGAACCTGACCGGGGACTCGGGAAGTTCGTCATGCAGCAACTCATCGACTCCCTCACAAGCGGCATCCCGGCCGGACTTGTCGAACTGCGCAAGCTCGGCCGGACACTGAAGCAACGCGCCATCGACGTGCTCGCGTTCTTCGACCGGCCCGGCACCAGCAACGGTCCCACGGAGGCGATCAACGGGCGCCTCGAACACCTCCGCGGCTCCGCCCTGGGCTTCCGGAACCTGACGAACTACATCTCACGGAGTCTGCTCGAAGCCGGCGGCTTCAGACCCCACCTACACCCTTGATTACGAAGAGCCGGTTAAGTCAATGGA # Right flank : TGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCCGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //