Array 1 87929-86309 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCHV01000052.1 Streptococcus thermophilus strain UC8547del3 gpvb3_seq57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87928 36 100.0 30 .................................... GTGAAATGCTTTTTCTAATTCATGTGGTCT 87862 36 100.0 30 .................................... TTAAGTGGTATTATTATATTATCGAAGAAG 87796 36 100.0 30 .................................... GCAACAGTAAAACGTTGCAAACGAAAACTT 87730 36 100.0 30 .................................... TTCCCGGCGTATATACTGGCTCGATTGTTT 87664 36 100.0 30 .................................... CAATAGTTACCCGAGTACCATCTTCAAGCA 87598 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 87532 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 87466 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 87400 36 100.0 30 .................................... TGTGACCAACTTCCACCAGCTTGGCCATTG 87334 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 87268 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 87202 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 87136 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 87070 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 87004 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 86938 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 86872 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 86806 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 86740 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 86674 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 86608 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 86542 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 86476 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 86410 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 86344 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGA # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //