Array 1 51-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIN01000053.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_68 contig0052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 112 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 173 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 234 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGGCCACTTATCAGCAAACCGGGCATCCAGAACG # Right flank : CC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 184031-185034 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIN01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_68 contig0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184031 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 184092 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 184153 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 184214 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 184275 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 184336 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 184397 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 184458 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 184519 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 184580 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 184641 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 184702 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 184763 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 184824 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 184885 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 184946 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 185007 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 201658-204189 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIN01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_68 contig0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201658 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 201719 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 201780 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 201841 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 201902 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 201963 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 202024 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 202085 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 202146 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 202207 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 202268 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 202329 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 202390 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 202451 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 202512 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 202573 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 202634 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 202695 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 202756 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 202817 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 202878 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 202939 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 203000 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 203061 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 203122 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 203183 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 203244 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 203305 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 203366 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 203427 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 203488 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 203549 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 203610 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 203671 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 203732 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 203793 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 203854 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 203915 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 203976 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 204037 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 204099 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 204160 29 96.6 0 ............T................ | A [204187] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //