Array 1 1152-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000290.1 Pseudomonas aeruginosa strain 134 scaffold_289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1151 28 100.0 32 ............................ TTTGTCTATCTCGATAGAGTCTTCGTGTTTGC 1091 28 100.0 32 ............................ ACCGGAGGACCAACCGTGGACAACGACAACGA 1031 28 100.0 32 ............................ TTGACCGGGCAGCGGCGAGTCAGGGAGGGCCA 971 28 100.0 32 ............................ GCCTGCTGAAAGCGAAAGCATCCGCGCAGATC 911 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 851 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 791 28 100.0 32 ............................ TAGATGTAAATCACGACGGAACGCGCCGAGTA 731 28 100.0 32 ............................ AGCCAGTTGCAGCTATCCAGCATGCGCATTGC 671 28 100.0 32 ............................ TGGGAGCTTGCGCCCCTTGGCGTATACCCACT 611 28 100.0 32 ............................ ACAGGCGATCACCATGCGGCCGATGTGCGCTG 551 28 100.0 32 ............................ TGGACGTCCCGAAGGTTCTGGAGACTGGCGGC 491 28 100.0 32 ............................ AAGGTGTTGCAGCCCGGACAAGGCCAAGACTC 431 28 100.0 32 ............................ TCGTCGACCGTCGCCTCGTAGTCGGCCTTCAC 371 28 100.0 32 ............................ AGACCACTCCCCCATACAGCCACCACGCAATC 311 28 100.0 33 ............................ TGATTGGCACCCGCTGGCCCCGCGTCGACTTCA 250 28 100.0 32 ............................ ATGCGACAACTGGCCGGCGCTATGCTGAACCA 190 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGAGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16879-15951 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000005.1 Pseudomonas aeruginosa strain 134 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16878 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 16818 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 16758 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 16698 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 16638 28 100.0 32 ............................ GATGACGAAAGAGCCACCGCCGCCCTCCACCG 16578 28 100.0 32 ............................ TCCCATAGACTTGCCGATCTCGGCTGCGGCGC 16518 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 16458 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 16398 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 16338 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 16278 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 16218 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 16158 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 16098 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 16038 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 15978 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCMCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9210-8448 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000078.1 Pseudomonas aeruginosa strain 134 scaffold_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9209 29 100.0 32 ............................. GCCGGCAGCGAAGTCGCGGCAGTGACGGAACC 9148 29 100.0 33 ............................. GCGTCATACATGCCCTCCCGAGAGAGCACACGG 9086 29 100.0 32 ............................. CCATTTGAGTAACAGTTACTCATGAGTGAATA 9025 29 100.0 32 ............................. AGCCGGATCGGATCGCGAAAAATGATCGTGAT 8964 29 100.0 32 ............................. ACCAGTGAGGTGACTTGCCTGTTCGTGCTGGG 8903 29 100.0 32 ............................. GCTACGCCGCCGACAGTTCGCCCATGGCCGAG 8842 29 100.0 32 ............................. GTGGCGCCAGGGCAAACGTACCCAGAGGCGCT 8781 29 96.6 32 ..............T.............. GCGCTGGCCGCAACGGCCAATGCTGCTGCGGC 8720 29 96.6 32 ..............T.............. ATGGGAGGCGTTTCCAGGAGCAACGAGCGGGA 8659 29 96.6 32 ..............G.............. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 8598 29 96.6 32 ..............T.............. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 8537 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 8476 28 79.3 0 A..........A..C.....-..A....T | C [8467] ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.6 32 GTGTTCCCCACGGGAGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAACATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACTGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGAGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8698-8370 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000130.1 Pseudomonas aeruginosa strain 134 scaffold_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8697 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 8637 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 8577 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 8517 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 8457 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 8397 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGTGGTGTGGCGATATCACCTACATCTGGGCGCAAGGCCGCTGGCATTACCTGGCCGCGGTGCTGGATCTGCACACACGGCGGGTAATCGGCTGGGCGTTCTCGGCCAAGCCGGACGCCGAGTTGGTGATCAAGGCGCTGGACATGGCCTACGAACAACGCGGCCAGCCACAGCAGGTGCTGTTTCATTCAGATCAGGGCGCCCAGTACGCCAGTCGTCTGTTCCGGCAGCGACTTTGGCGCTACCGGATGCAGCAGAGCATGAGCCGTCGAGGGAACTGTTGGGACAATTCGCCAATGGAGCGCCTGTTCCGCAGCCTGAAGTCGGAGTGGATCCCGTCGACGGGCTACCTGACGGCGCAAGAAGCCCAGCGGGACATTAGCCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTACAG # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10657-9969 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000130.1 Pseudomonas aeruginosa strain 134 scaffold_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10656 28 100.0 32 ............................ TTGCGCGCAGTGTCGCGACTTCCTCCCTGAGC 10596 28 100.0 32 ............................ CGCGTAACGTATCTTTCTGAGGTCGGAAACCA 10536 28 100.0 32 ............................ GTGACCTTGCGCCCCTGGACACTGATAGAAAT 10476 28 100.0 32 ............................ TTGGCCCGCTCCCACAGCGCCAAGCGCTCCGC 10416 28 100.0 32 ............................ AACGATGCAAAGCAGAACAAGCCGAGCGTCAA 10356 28 100.0 32 ............................ TCCAGCGCCATCAAGGAACTGGCGGACACCAT 10296 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 10236 28 100.0 32 ............................ ATCCCGACGTGGGGCTGATCGACGCGAGCGCA 10176 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGAGG 10116 28 100.0 32 ............................ GCCATCACCACCAGGGTCTTTCGGGTCGGTCG 10056 28 100.0 32 ............................ TTCCCGGCGCACCTCGAGGCGCTGCGCGAGTG 9996 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : TGGGCGATCCGCCGTAGGCGGCCCCGGAGACGGTTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAGAGTCCTCGCCCTGAGAGAGGTGTCTGATGAGCAAGCAACGACGTACATTTTCCGCCGAGTTCAAGCGAGAGGCCGCCGCCCTGGTGCTGGACCAGGGCTACAGCCATATCGAGGCCTGCCGTTCGCTGGGGGTGGTGGATTCGGCCTTGCGCCGTTGGGTGAAACAGCTCCAGGCGGAACGCCAAGGCGTGACCCCGAAGAGCAAGGCGCTGACGCCCGAACAGCAGAAGATCCAGGAACTGGAAGCCCGGATCAACCGGCTGGAGCGGGAGAAAGCGATCCTAAAAAAGGCTACCGCTCTCTTGATGTCGGACGAACTCGATCGTACGCGCTGATAGACCAGTTGAGTGAGCAGGAATCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 702-1828 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXT01000151.1 Pseudomonas aeruginosa strain 134 scaffold_150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 702 29 100.0 32 ............................. CGCTCTCGATCTGGTCGATATCGACAGTCAGG 763 29 100.0 32 ............................. ACCGCCTGCGAGCAGAACGGCGCGGTGCGGAA 824 29 100.0 32 ............................. GTCGAGGGCGACCGGAACGGGGAGGCTACCGG 885 29 100.0 32 ............................. TCTGATCTGGGCGGTGTCCTCCAGACGAACCA 946 29 100.0 32 ............................. CTCGACAATCCAGTGTCCAATCGCGCTGCTGA 1007 29 100.0 32 ............................. GCAGCGAGCACCCTTACCTGCAGCGCAAAGGC 1068 29 100.0 32 ............................. GTGCTGGAAGTTCTGGAAGAGGCCGGCGCCGA 1129 29 100.0 32 ............................. ACATTATCCCCACAGTCGATGCCGAGAAGACG 1190 29 100.0 32 ............................. AGTTGCGGAAATGACAGAGATGTTGCGGAAAT 1251 29 100.0 32 ............................. ATCCAATTTCGCCCCGATGCCGGGTTCGACGG 1312 29 100.0 32 ............................. AACAGAGTGAGTTCGCCATTCGGAACGTGAGC 1373 29 100.0 32 ............................. GCCCTCAACAGGGCCTTTTATTTTGCCCGGAG 1434 29 100.0 32 ............................. CACGGCTTCTCCATCAGCTTCCGCATGCCGCG 1495 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 1556 29 100.0 32 ............................. TAGTAGCGGAACCCGACCGTCTGTGCCTTCGG 1617 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 1678 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 1739 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 1800 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //