Array 1 225270-226899 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 225270 24 100.0 42 ........................ AATAGCTGGATGGGGATTGGCGCATGCGCTTGGCTGGAACCC 225336 24 100.0 44 ........................ CTTGCTCATAGTCGAAGCAATACATCTTGGGACGGCGACCTCCT 225404 24 100.0 42 ........................ CTCGACTGCGTCGAACTTCATATCGCGCTCAACGCGCACGTA 225470 24 100.0 41 ........................ CGCTCGGTTGGACACGTGGACTCGATAGCTTGGCGCATCTG 225535 24 100.0 43 ........................ AGATCCATGTGCCGATCTTCGTGTTGCCCGTCTCGTCGAATAT 225602 24 100.0 44 ........................ ATAACAAGATCAACCTTGTCGCCAATGAGCTCGCTAAGCAAGGG 225670 24 100.0 39 ........................ GAGAACATCGCAATAAAGATAACGGAGGAACAGCTACGC 225733 24 100.0 43 ........................ CGCCGTACTTCTTCAGCACCTCCTTCACCCGTTCCTTCAGAAA 225800 24 100.0 45 ........................ GTGCAGATATGTGAACAAGCCGTACGCGAAGCCGGTCAGGATAAG 225869 24 100.0 42 ........................ GGTCCGTCTCGATTCGGGATTGGCTGTGATAGTGACAAAAGA 225935 24 100.0 44 ........................ CAGAAGAGCTCGAACTTTACGACCTTGCGTCCGATATATTCGTA 226003 24 100.0 41 ........................ GGCGATTTCAAATACCGCTATGAGGCGATATCCTACTGGGT 226068 24 100.0 50 ........................ GAGTAGAGGTACCCTCCGTCGACGACCGCCCCCTGCGTGATGCTCAGTTG 226142 24 100.0 43 ........................ AGGTGTAGTCGGTATAGCTGATGCCGTTGCACTGCACCTGGTA 226209 24 100.0 42 ........................ ACGATCTCGCCATGCTTGAGACGAAGCTTAGGTTGGGCTTTC 226275 24 100.0 44 ........................ TGGAGCGTATTTCGCAATACGAGGATGCCGCACATATATCCAAT 226343 24 100.0 42 ........................ AGCAATCCGCCGCGGGTCGGCGCATGCCAACACAGCGTCCAA 226409 24 100.0 41 ........................ AATTGGAGGGAAACCACGGCCGTGCTGACAGACGCCGGCAA 226474 24 100.0 42 ........................ CCTGTATTGCCGGCCGTCCGGCCCCTCCACGACGAAGAAGTT 226540 24 100.0 45 ........................ ATTGCTGATAGTGTTCCTGCTAGTTGTCATTTGGCCTATACTAAG 226609 24 100.0 46 ........................ CCAGAGTGCTCGATGAGGCGGGCATAGACAGGTACTCCATCACCGA 226679 24 100.0 42 ........................ GTATAGCCGCTCACAGGGGTGAACGATACAGACTGTGCGCCG 226745 24 100.0 40 ........................ TGTTTAGGGAGAAGATTAGGGAGAAAAATTGAAAGAGAAA 226809 24 100.0 43 ........................ ACTATCTCGATGTGAACAACATATGCATCAATGTCGGCGCCGG 226876 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 25 24 100.0 43 CCTTCAAATCTCTATCTGAGATTC # Left flank : ACAGTCCTGTGCCTGGCGTAGTTCCCCACAGTCTCGACCATGTTGAGGGCCTCGACCTCCACTCGGAACCGGAAGGCGAACGACACAAACATAGCTACCTCGCCGCAGACGCCCGTCCCTTCACCGCCTGCCGCTCACCACCCACCGCCTTCGCAAGCGCCTTAAACGCCACCTCCTTCGCCACAGCCGGTCTCCTCTTAACCAACGCGGCGAAGGCGCGGACAGCCTCATCCAGCCCCTCCGGACGGGCACAGCCCTCCAGTGTGCCGAAGTACCTCAACGCATCGTAGAGGGCCTCCATAGCTGTCGTGACGTAGAACTCGTCGTTGTCCTCAACGCGGGCTAGGCGGTCAAGCGGGCCATAGTACTTCTCACGCGCCAGACACGACAAGACGTGAACCAACGGTTCCAAGGATAGTTTCTTTTGTTCAGTTTTGTTATTCATAAAAAATGTAGAACAAATGTTCTTAAATATTTTGATCTTTCCAAATCTATATCCC # Right flank : CCGGGTATTGTTGTCTTTGTTTCTACGAGCTTTTAAGCTTTTTTCTCACGAGACTGACGTTGATCTCGGCGGACTCTTGAGGTGGCATGATAGCAGTTTTGTCTATTTTCCGCGGCCGGCTTCTGTCTCAGATAGTTGAAAGTGTGTCTTTGGGGTTCGGCGCCGCCATCCGCCGCGCCTCCGCACGACGATTTATATGCGGGATCCCCGCTTGACAAAAACACAACGGCGGAGGAGTAGAACGATTTTACAGAAGGAAAGGGCAAGTTGCACGACGATTTATAAACGCCGTGGTCTATATAGATCTCCTTTCAGTTATCTAGGTTTCTGGTCTTGAAACTCAGTGTTGAGAGGATGTAGTGCTAGTTGTGGTGTGTTATGGTTTTGTATGTTGGCGCTGTTGGGTCTGGGTTTTTGCGGGTGTTGGTGGACGTTCTAGGCCGGTGGTGTTGCGCTTTACATCGCCTCTGGTAGTGTTTTTATTTGGAGGGGGTGAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAAATCTCTATCTGAGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 317075-317508 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 317075 25 100.0 43 ......................... TGTACTTTAGGAATAATATACTCGTCAAGTATCTTGTAATACA 317143 25 100.0 42 ......................... TTGCCCTTCAGAAGGTCGCCCTCCTTTACGTTGCAACCCCAA 317210 25 100.0 42 ......................... ATTAGACGTTGTAGCACTAACGCCTCTTTCACAACATTTATA 317277 25 100.0 42 ......................... GCCGGGCATGTGAGCCCCCGTTCGATGTGCTCATAAGTCTGC 317344 25 100.0 46 ......................... GATCAAAAAAGGAGGTGGACGTTCAACGTCCTCTGCACGTACCTAG 317415 25 100.0 43 ......................... ATACACATCGGCACCCCATGCTATGTATTTTTCTCGCGTGGTA T [317432] 317484 25 96.0 0 .............T........... | ========== ====== ====== ====== ========================= ============================================== ================== 7 25 99.4 43 GTGGAAATCAAAAGATAGTAGAAAC # Left flank : CGTAGTAGGCCTTCTTGAGGGCGTCGACGAGGGCGACGACGAGCTGCCTAACGGGCAGGGGCCTCGGCAGAAGCCTCCTAACCCTCACCGCAACCCCCAGGAGGTCGTCCACAGAGCCGAGGTAGACGGTGTCGCGGGGGCGCCAGCCCAGCTTGAGGTACAGCCGACGGCCCAAAAGCCAGAGGTATCCCGCCAAGGGGCCTACCCTAACGCGGCCGAAGTAGAGGTACACATCGATCACAACAAAGGGCGAATCGCGCCGCTACATATATGTCAGTAAAGGACATAATCGACATTTAAAGAACGCGTTGGAAAGGCAAGGCGAAGAACGGCGCTGGGTCGCGCCTTCTCTAGGGCGCAGTCGTAAAGGCGAAGAACGGCGCATGCCGTAGCCCGGTCAGAGGAATATATGAATGTAAATGGGCGTTTGAAGGCGACCGCCGGGCGGGCGGAGGATCTGGGCAAAATTTAAATAGCCGGGGCCGCAATCGACGTGGGCG # Right flank : CAGATTTCCGCATCAACACAAAATAGAAACAGAAACCCCTATATTGCCGGCTAAGCGCGGCGCCGGATATATTTCAGGAGCGTTCTCCCCGCCTCCGTGAGTCCGGCGTCGTTTAAAAGTCCGTGTTCTGCAAATTCCCTGAGAATCCTTCTGTCGTACCGCCCGAGGTCCTCTAGAGGGCCTTTGGCCAGCTCCCTCCTCCTGGCGCTCGCGTTGGAGCGCGTGAGCTCGTTGACGTAGAGTATCGGCATTATCTGGGCTATCCTCTCGGCGTGCTCCGCCATAGGCCTCTATCTCCGCGTCCCACAGTCTGACCGCCAGCAGCGCGGCGGTGTAGAGGCAGAGGCCCCTCGCCCCTCCGCCTATGTCGAGGCAGTACTCGCCGCCTCTTTCGCTGAACAGCTCGGCGGCGTCGCCGACGCGCCTCCAGAAGTCCTCGGGGTTCAGGTAGGCCTCCTCCAGCGCCGCTCCTCGCGTAGAGCCGCACCTCTCCCACGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 345853-345345 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 345852 25 100.0 45 ......................... CTTCCACAAAGTGAGCACCGCCAGTCTTAGAAATGTAGCCTAGCT 345782 25 100.0 43 ......................... GTTATCTCCGATGGACTGGCCACACACAGAGAGAGGTAGGTGC 345714 25 100.0 46 ......................... ATCACGTTTGACTTCCACAGTTACGTGGTCGGAAGAAAAAGCGGGG 345643 25 100.0 48 ......................... TACGGGAGGGGATATTTTAGCTCCCCAGCCGCTCCAGAGACCTCTTCG 345570 25 96.0 43 ........................T GTGAGCCATGGCACTACAGGCCCCCACGCTGTATCGCCATTGA 345502 25 96.0 43 ........................T ATCGCGATGCTATATAGCCTCGCGTGGACGGCGTAGAGCGCGT 345434 25 96.0 41 ........................C GTTCTAATTCTCGTCTTGATCCTCTCCTCTGCTCCTCAGGG 345368 24 84.0 0 A........G..........-..C. | ========== ====== ====== ====== ========================= ================================================ ================== 8 25 96.5 44 GTGGAAATCAAAAGATAGTAGAAAG # Left flank : GTAGTAGGCCTTTTTGAGGGCGTCCGCCAGCGCAGCCACGAGCTGCCTAACGGGCAGAGGCCTCGGCAGAAGCCTCCTAACCCTCACCGCAACCCCCAGGAGGTCGTCCACAGAGCCCAGGTATACCGTATCACGCGGGCGCCAGCCCAGCTTGAGGTAGAGCCGCCTGCCCAAAAGCCAGAGGTATCCCGCCAAGGGGCCTACCTTCACACGGCCGAAGTACACGCCCACGATATCCCACGAGCATTAAAACATTCCAATATATGTCGGTAAAGGATGTAATATACTCCAGACAAGGGGCTAGATGGCCAAATGCGAAGAACGGCGCTGGGTAGCCGCCGTCTCTAAGGCATTGTCGCGATCGTAAAGGCGAAGAACGGCGCACGCCGTAGCCCGGACAGGAGAATGTGTGAATGTAAAGGGCAGCGGAAAAGCGGCCGCCGGGCGGGCGGAGGATCTGGGCAAAATTTAAATACCCGAGGCCGCAGTCAACGTGGGCG # Right flank : GCACATACGGCTACACCTGCGTTCCTTAGTAGGGTCGCTAAAAACAGCGCAACGCATGTCATAATAATTGAACGTAGAGACAGCCCTCGTCCAGCGTTGTAGCCGTTATCCTCTGCCGTGGAGGCGGCTACATTGCATTTGCGTCCACCCGGGACGGCGGACTGATGTGCGCCTCTCCTGGGCGTCGCCAGAGGCCGCAGACCTGAGCCCCAGCGGGCCGCGCCGGTTCAGCCGCGTGCCCCATCCAAACGACGGCGTGCCCCTCTGCGTCTATGCTAATATACGGGTGGCCGTCAATCTCTGTGGCCATCGAAGAGCTGAGGATGTTCGTCGTGCCTCTGTTGGCCTCTGGAAAAAACGTCTTGTTCGTGGGGGCGCCCGGAGTCGGCAAAACCAAGCTCGCGCTTGAGTCGGCCGAGTTCATGACCGCCTGCGCGCCGGCGCTCGTCGTGGGCAGGGACGGCCTCTCCCACGAGGATCTTGTGGCAAAATACGAGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCAAAAGATAGTAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1078209-1075974 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================================= ================== 1078208 24 100.0 46 ........................ TGTATTGAGAGATGTAGTTGATTATTCGTGCGGCGCAAATGTCCGC 1078138 24 100.0 50 ........................ CTCGCCGCTCACGGGGAGGAGGAGGAAGAGGCCCACGTAGGCGTCGTATA 1078064 24 100.0 39 ........................ AAGTACATCCGCGATCGTTAACCTCTTTTTTCTCATCTT 1078001 24 100.0 39 ........................ TGACACAAAGGGCGTTGACGTCACCGACATCCCCGACGC 1077938 24 100.0 42 ........................ TCTTCGCCCCGGCCGTCTGGGGAGCCGACTGGCTCCTTCCCA 1077872 24 100.0 37 ........................ CGTATTTAACATCACAGCTGTGTTTCAGAGCGCCTCA 1077811 24 100.0 45 ........................ CGAAGTCGGATATGCGATCGCATGCCTGACCACGTAGATCCGCGT 1077742 24 100.0 41 ........................ CTATATACACGTATATACACAGAGGGGCCCTTTGAAGGCGG 1077677 24 100.0 43 ........................ TCGCGGGGGAGCGGATACAAGACATCCTGGCGTGGTACGTCGC 1077610 24 100.0 40 ........................ TGCTTAACCACTCGCCCGGTATTTCCTCGATCTTTTCTTC 1077546 24 100.0 40 ........................ TCGAGTCGCTCTGCGGCGGTGAGCCGCTGTCCGAATGTGT 1077482 24 100.0 38 ........................ CCACTGCGCTATATGTTCCAGGACGTGCTGGAGGATGT 1077420 24 100.0 41 ........................ GCTCGTGTACACGCAGCGCAAGCACTCACAGTGTCTCGTCG 1077355 24 100.0 42 ........................ TAGAGTACCACCCAGACGGCCGCATGCTGAGCAAGTGCGACA 1077289 24 100.0 49 ........................ CCTTGCGGGGCACGCTCCTCAACCCCTCCGTCAGCCCCCTCCAGTCGAT 1077216 24 100.0 43 ........................ ACTGGCGGATACACGTTATGCCGATTGGAGAGTCAATATACTT 1077149 24 100.0 44 ........................ GCAGTTCGCCTTGTGGGCCTACTTGATAAACGTGTTCTTCACAG 1077081 24 100.0 42 ........................ TCTTGACTAGATAGCCCTTCTTGCGCTTTTTCTCCGATGGCT 1077015 24 100.0 43 ........................ AATCCCTGTACAGCTCCTCAATATAGCGCACATATTCGCGCCA 1076948 24 100.0 42 ........................ TTGAGAATATTCTATAAAGAATTGCTGAATTTTCTGATGGGC 1076882 24 100.0 43 ........................ CGATTTGAGGAAAAAACCTTTAGGCGCGGCGGCTATGTACTAT 1076815 24 100.0 43 ........................ TCTTCTCGAGGTATCCCAATCTGCCAGCAAAGAGCTCGAATCT 1076748 24 100.0 46 ........................ CTTTTCCCTCATTCTGTCGACGAGGATCTCCTGGCTTTCTTCCTGG 1076678 24 100.0 40 ........................ AGTCGTGTCCGCTACCACCTCCTAATCCCTTCTTTTTTCG 1076614 24 100.0 45 ........................ GCGACGATCAACATCGGCACAATTAACATCGATACCATCGTGAAG 1076545 24 100.0 46 ........................ ATCTATTGATGACGAAGCTAACAATATCAGCTTGAACACACCATTG 1076475 24 100.0 42 ........................ GGCCTGACGGACAGCACTGAGCCGTCAAAGAGGACGGACAAC 1076409 24 100.0 44 ........................ CATGTCACAGGATCATGCTGATAAGAGAAAACATGGAATATACG 1076341 24 100.0 57 ........................ GTAAGTGACAATCTTACAGAGTACTTCTCTATTGCTCTCCATAGAGCTTAAGCACTC 1076260 24 100.0 39 ........................ TAAGACTTGGGCCACAAGTCTTAAGAATGAGGAATAGAA 1076197 24 100.0 45 ........................ TTTTCTCTACATAGCTTTTCTTTATCGTTATCTCAACACTGAACT 1076128 24 100.0 41 ........................ CAACTTCTTTTTCTGTATACTCTAATTTGTATGCAAGCGAT 1076063 24 100.0 42 ........................ TACCAGGAGTTCTGGCTACTCTACTTCCAGGCGCCGTTTTGG 1075997 24 95.8 0 ..........A............. | ========== ====== ====== ====== ======================== ========================================================= ================== 34 24 99.9 43 GAATCTCAAAGAGAGGATTGAAAG # Left flank : CTCCGTAGCGCGAGGAGCGTGTTCAGCTCGGCGCTCGCTCTGCGGGGGTTCTCGAGGGCGTAGCTTAAGAGGTCGGTGGCCCCATCCCTCTGCGCGTTGGTCAGAAGCGATGTGCCCACAGTGACTCCGAAGAAGGTCTCCCTCATGGGCAGACCGGCGGAGCTCAATTTATGCGTTTCGGGCCCGACCTATATATCCTAAATAATTCTCAGCGTTTAAAAATCGTCGTGCAGCTCGCCCTTTCCTTCTGTAAAATCGTTCAACTGCCGCGCCGTTGTATCTCTGTAAAGCGGGGATCCCGTTTAAAAAACGGCGGACAGAAGTACGGCGTTCGGCGGCGCCGACCTCCAGCCGCACGCTTTCAACTGCCGGAGGCGGGATCCGACCGCGTAGAACAGACAAAGCCCTCCCCGGGGCAACACAAGGTCGCGCCGGGACTAACACAAAGACCCACAGAGGAAAACTTAAAAATCGGCAAAAACTAAAGACCAGAAGGCCCG # Right flank : AGGGCGCTTGATTGTTGGTCTCCTCCTTGGTTGCGAATCTCAGGGCGTATTGAAGGCGCATTGATGTTGCTTATGGTGGGGCCTAGTAAGGCGTTGGGGTTCGGCGTGGCGCTGTGTGGTGTGGGCGTTCGGCCTGCGCTGGGGCTATGGGCACTGGGTTAGTGCGAAGCAGAGGCATCTGTCGTCGATTGTGGCGATGCAGCCCCCCGTGGTTGCCCCTTCTCTGTAGTCTATTTGGCATTCCGCGTGTCGGTAGGTGCAGTCGTGTTTCGCAATTAGGAAGAGGTCGTCCCGTTGGCACTGGCAGAGGGCGGCGTAGAGCTCGTGGTATTGGTAGACTGCGTGTTGGCAGTGGCCATCTTCCACGGCCCAGAGGCAGGTGGGCTGCATCCCCATATATCTGATGAATCTTACGGCGGCTTCCGCGTCTTGGGGGTGTCTATGCCGTCGCAGCGACGGCCTTTGGCGCTGGCGTTTTTCCCGTCTACTAGGATGCCGAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAGAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 1081877-1084117 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================================================================================== ================== 1081877 24 100.0 43 ........................ TCTGGACTGTGTGTTGCAACAGCGAAGTCGCGAACACCTCGAC 1081944 24 100.0 40 ........................ CGTTGATGTGGCCGGGACTGGCTGACTCAGCTATTACGTT 1082008 24 100.0 42 ........................ ACTTCAAGGCGTGCTTGCTGGCGTTTTAGGCGACGATGAGCT 1082074 24 100.0 41 ........................ CTCTTTTTCCTGCCCCGTTCTTCCAACTCTTCGCCGGTCGT 1082139 24 100.0 39 ........................ CCGAGTAGCCGACGGCGCGTCCGCTCACTTAAGATCTCA 1082202 24 100.0 41 ........................ TGTGATAGATGAGATAGACAAAATCAAGTTCAGCACCACGT 1082267 24 100.0 51 ........................ GCGCACTAATTACCGCCCCGGCGCAGGATTACCAATCTTGCCGGGCCGGTT 1082342 24 100.0 47 ........................ TTGGTCTCAGGCGCGCGGTAGCCTTCCAGCTGTACGACCAACTCGAT 1082413 24 100.0 44 ........................ TCCGGAGGAGGCGGCGAAGAGGATGATAGAGTTGGCCAGGCTGG 1082481 24 100.0 43 ........................ GGCATGATTGGTTGCGCCGGGAGCTCTGGGATGTGATCCGCCA 1082548 24 100.0 46 ........................ CTACTTGGAGTATGCCGGTCAAATTCGGTGGGGCGGACGTCGTACC 1082618 24 100.0 43 ........................ TTTGTTGAAATAATCACCGTAACCCAGGCTTTCCAACCATCTT 1082685 24 100.0 46 ........................ ATCGCTTGTCCAACCGGGCTCCTCTATAATTGTCGTCATTAGCTTA 1082755 24 100.0 43 ........................ ACTGGATCATCGATGGGCAGAATGCGGGCGTGTCGGCTATATG 1082822 24 100.0 46 ........................ CAAGTCGTCGAGAAGTATTTTGGTCTGCTGAAGCAGTACGGTTTCG 1082892 24 100.0 45 ........................ GTACCACGACATCAGCCATGTGACTGTTGCGCCTAGCTCAATCTC 1082961 24 100.0 44 ........................ ACTTGAATTTCAACAATGTCACCAGCACATATGTCCAGGCTAGG 1083029 24 100.0 44 ........................ ATTTTTATTCCTCATAAACATGGTCTCAAGGTCAGAACTAAGCC 1083097 24 100.0 43 ........................ AATGGCTCCAAGGGATCGTTCTCTAGACTCCAATTTTTCTAAT 1083164 24 100.0 43 ........................ TTTGTCGACGGGATCTTGCGACATGCGGTACGCTGCAGTGTCG 1083231 24 100.0 44 ........................ GCTCCACCGACCAGTACCCATATAGCGTGAACTCTTTCGCCGGA 1083299 24 100.0 40 ........................ AGTGCGCAGACCCCTGCACAGGCCGGCGTCCTTCACAAAA 1083363 24 100.0 42 ........................ ATGTAGAGCTTGACCGGCGCCCCAGGATAGGGCACCGGGCCG 1083429 24 100.0 51 ........................ TCTGTATCCCGCCGGCGCGTGGAGAAGGCGTTTCTCCACAACGTCGTCCTC 1083504 24 100.0 43 ........................ TCGAGGACGATGTAGTCGGGATTGCTCGCGTTTATCAGCTTGA 1083571 24 100.0 43 ........................ CTCGTGGATACTCCAAGCGAAAGAGTTCACGTTATACGGCTAC 1083638 24 100.0 46 ........................ TCCACAAGCCTCACGGCCGTCTTCACGGCGCGGCCCGGTCTGACGG 1083708 24 100.0 46 ........................ GGGATATACTACACGGCCCTGCGCGTCATCGGGAACAAGCGCATGG 1083778 24 100.0 39 ........................ TATTCCGTAGATTCCGGCGTAAAAGGTCTGGGCGGCGAT 1083841 24 100.0 38 ........................ CCGTGCACCTATGACTTTCAAGTACTCAAGGACGTTAG 1083903 24 100.0 41 ........................ AACGCTTGGACAAATACCGTACCGCTACCCTCATATTGATA 1083968 24 100.0 100 ........................ GGGATATACGTCTCGGATTAAGCATAGCAGCTTCACCTCTGCGGAATCTATATGGTTTGAAAGGTCTCGAGTATAGACTACACGCCGAACTTTACATACT 1084092 24 79.2 0 ..GC.......C...CG....... | CT [1084107] ========== ====== ====== ====== ======================== ==================================================================================================== ================== 33 24 99.4 45 GAATCTCAAAGAGAGGATTGAAAG # Left flank : GCTGTCTAGGGCCACTACTACGCGGGCGTCGGCCTCGGCGCAGACAGACGATGTGAAGCTCCTCGCCCTCCGCCCGTCTCCACAGTCATACTCTACCTCAGACCAAGCCAGCGGGTTGCCCCACGTCGCAATGTAGAGCCTAGCCATGCTACCACCAACGGACTGTATTAAAGATATACTTCACCGACCTATATATCCTAAATAATTCTCGGCGTTTAAAAATCGTCGTGCAACTTGCCCTTTCCTTCTGTAAAATAGTTCTACTCCTCCGCCGTTGTATCTCTGTAAAGCGGGGATCCCGCATATAAATCGCCGTGCGGAAGCACGGCGCTCGGCGATGCCGAGGGTCGGACGCACGCTTTCAACTGCCGGACGCAGGACCCAACCGTGTAGAACAGGCAAAGCCCTCCCCGGGGCAACACAAGGTCGCGCCGGGACCAAGACAAAGACCCGCAGAGGAAAACTTAAAAATCGGCAGAAACTAAAGACCAGGAGGCCCG # Right flank : GCCGGCGTGCGGCGCTTGTTCCAACGTGAGTTGGTCTAATGGAGGTCGGGGGCGTTGAAGGGAGTTTAGGCCGGCGCCGTGAGGGGCTAGATTTTTTCCACTGTTGTTGGCAGGTGGCTGCACCATTTTCTGTACCAACAGTTTTGGCATTTCGCCGGATTTGGGTTTAGGACCGGCGGCTTCCCCTGGAGTATCTGTTGTAGCCTCGAGACTGCGTAGTTGAGGAGCTCCTGTAGGTCTTTGGCCATGCGTATCTGGGCTATCTGGCCGCTCTCAGCGTAGTATATATAGGCTGTGGCGACAGCCCTTCCGTACGCCCTCTGCACCATGGCGATGTAGGCGGCGGCTTGCGCCTTGTGGTGTATGGGGATGCGGCGGGGCCTCGCCGCGGCCTTCACCTCGAGGGGGCTCGGCCTTCCGTTGATCCAGAGTACGGCGTCCACTGTGCCGCATAAGGGCGGGGCGGTTATGTGGACGGAGTATTCGGCCCTCTCGGCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAGAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 6 1096998-1095240 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1096997 24 100.0 44 ........................ ATAGCTATCTAAGCGCAATAGTAGAAATTCCAATTCTAAGCTTT 1096929 24 100.0 45 ........................ AGCTCTGGGTATTTGACAATTACTTCGGGCTTGGGGATGCTCGTG 1096860 24 100.0 41 ........................ CCTCGTTCCTTTTCGCTATCACTACATCTCCTAATTTGTTT 1096795 24 100.0 43 ........................ CCGCAAGGCCAGTGCATGGATTCTCCGTACCTCTCAGTGAACC 1096728 24 100.0 51 ........................ TCAGAGCAAGGGGTACAAGGTCTACCAGTACGGGGACGGTCTCATAACAGT 1096653 24 100.0 49 ........................ TCGCAGTTCTCTATTGTTATTAAGGCCTTATAATTTGTATATGTTCCCT 1096580 24 100.0 42 ........................ GGGAATACATTAAGACCAATAAAAATTGTTCACCTCGGCTTT 1096514 24 100.0 43 ........................ TTGAACGTCACGCCGGCGCTGTCTCAACTACTTCGCGGTGGCT 1096447 24 100.0 41 ........................ TTCATCGTGGCGGCCTTCCTATTCTGGTGGTGGCTGAAGAA 1096382 24 100.0 40 ........................ GGGACAGGTTCAAGGGGTTCCTCGGCCTCCTCATCGTGCT 1096318 24 100.0 37 ........................ GTTGACCAGGTACTTCGACAACCTTTACACAGCCAGG 1096257 24 100.0 40 ........................ GCCGGCCTTCGTCGCATGCTCCGACGAGTGGAGCCACGCT 1096193 24 100.0 37 ........................ ACCTGCATCTCCGACGTTGGGGATGACGCGGGCGTCG 1096132 24 100.0 44 ........................ TAATGGATCAATATAGAACTCAGTCTCGTGGTTGGTCTCATATA 1096064 24 100.0 43 ........................ CAGGGCATAAAGCCTATTGCGTTGAAGTGCTTAACTACCTCTT 1095997 24 100.0 47 ........................ ATCTCCGCCTTTATCGCCAGAATTCTGCTGTCCATTTGGGTTTCGGG 1095926 24 100.0 37 ........................ ATGAGATCCCACCAGTTGAACGTGCCCGCCTGGCTCG 1095865 24 100.0 43 ........................ TATCGACAAAGCATCTAATGCCACGCTCAACGATATGTATCTC 1095798 24 100.0 41 ........................ ATCAGCCGGCTCAAGTCGTTTGGTACGACAACGTAACGATA 1095733 24 100.0 44 ........................ TGAACTTTCTACAAATACCTGCATTATATTATCCGTAGAACCTA 1095665 24 100.0 39 ........................ CGACAGCCTGACGCGATGATGGCCGCGGGGAGCCCGGCG 1095602 24 100.0 45 ........................ GCGGAGAACGAGTACGTGATAGTTGTCCCGGCCGGAAGTAGCACG 1095533 24 100.0 41 ........................ ATTTATTTTTATTCTTTTCTGGATCTGAGTTTGGGCCTTCA 1095468 24 100.0 41 ........................ ACCCAAGTACAAAGTCAATGAGGCCGGGGAAATTGAGCTCG 1095403 24 100.0 47 ........................ CGATGGGCGACCTCGAGACGAACTCCTCAAGGACGCGCCTGACCGGC 1095332 24 87.5 45 .........GTT............ CTTCAATCTCATCTAGTGCGTCCTCAAGCCGCATCAGCACATATA 1095263 24 83.3 0 ..G...T...T...A......... | ========== ====== ====== ====== ======================== =================================================== ================== 27 24 98.9 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AAGGGACTGCAAGTATTTCTCCGCGCTAAACTATACCGCCGACTATTTCCCGTTGGAGAGCCCCTCCTGGTACTACCGCCTAATTGCAGAGACGCCGTGCCGGCGGGCGATGGGGCGCAGTTGGGGCCCCGGCCCTCCCGCGTTGGTCCGTTAGACGTCCGGTCAGCGGGTCCACGAAATTGGAGAACCTATATATCCTAAATAATTCCCGGCGTTTAAAAATCGTCGTGCAACTTGCCCTTTCTTTCTGTAAAATCGTTCTACTCCTCCGCCGTTGTGTTTTTGTCAAGCGGGGATCCCGCATATAAATCGCCGTGCAGAACAACGGCGGACGGCGTCGCCGACAGTCAAACACGCGCCTTCAACTGCGGGACGCAGGGGGCCAGTTCTAGAGAAATCAGCAGTCCGGGGAGAGCTATCTCAAGAACACGCTGCAATCAACGCAAAACCCACCAGAGAAAAACTTAAAAACAGCCAAAAACCAAAACCCAGAAGGCCCG # Right flank : AGCATGTATGGAACTATGTCCTCGCTTGGCATGTATTCGGCGTTGAATCTCGTGATGGCGGTTGAGGGGGCAGGTCGCTGTGGAGGAGGGGTTGGTGCCGCGTCGGCGGTGGGGAGTGCGTTGGGATGTATAATAACTTCTGTGTTGAGGGGGGTATGAGGGTTGTTGTTGAGAATTTTGGCGTTATTAGGGAGCTCAATGTGGAGCTTCCTGAGGTTTTTCTGCTCTTTGGGCCGAATGGGGTGGGGAAGACCACGATATATACCGCGATTACGGCGTTTGGCTACTTGGAGTGGGGGAGGGGGCTGTACCTGGGGAGACGTGTCAGCGCTTGGAGGAGGACGCCTCGGGGTCGTGTAAGCGTGTCTGTGGAGGGCTTGCCGTTTCCTAGGTCGAAGTGCTACGGCGTGCCGTTTCCCCATGACGTGGTGGAGGAGCTTCGGAAGGTTTCTGCGGATCACGCCAACAGGTTGGCCCAGTGCGACTATGGGAGGGTGACC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 7 1103070-1104118 **** Predicted by CRISPRDetect 2.4 *** >NC_016070.1 Thermoproteus tenax Kra 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================= ================== 1103070 24 100.0 42 ........................ TCAAATTCACAATCAACTTTCTACTGAACTTCCCGTCATGGA 1103136 24 100.0 46 ........................ GCGCGCTGTATACAGCGCGCCTTTCGCGGCAGATATCGCCCTCAGC 1103206 24 100.0 45 ........................ CTTCGTCGAGAAGTCCTCGACGCTCAGAGACATATTCTACAACAA 1103275 24 100.0 44 ........................ CTTCTTACTTCCTCAAGTCTCCTGGCTATCTCCTGAATTTTTTC 1103343 24 100.0 44 ........................ AGGCTACGCGATGTGCTAATTCAGTTGCGCGACGTGGCCGACTC 1103411 24 100.0 45 ........................ TCGACGACGATGAAGTCCGGATTGCTCGCGCTTATCAGCCTGAAC 1103480 24 100.0 49 ........................ GTAGATCTCGACTGCCACCGCCGGCTTGGCGCCGCGCCACGTGTAAATT 1103553 24 100.0 43 ........................ GGATAGACACGGCGGAAGCAATATGGACATCTGATCTCATCGA 1103620 24 100.0 39 ........................ CTTTTATACATCTTTCTTTTTCGGCTATGTGCGACAACT 1103683 24 100.0 44 ........................ TCTAGCTCAACTACCTTTTCGCCCATGTCCAAAGGCCCAGACCT 1103751 24 100.0 40 ........................ AACAATAATGATATCGTGTGCAAAGATAGACAAAAGCGGC 1103815 24 100.0 46 ........................ CTTGGGCGTTGGAGCGGACAGAGCCCGCGCGCTCTTGAGGGAGAGG 1103885 24 100.0 40 ........................ CTTCCTCACTGCGCACTCTCTCGTACTTGCACAGTTTGGC 1103949 24 100.0 43 ........................ ACCGCCAGCTTGAGCATGTGCGTAGTCCCGCCGGTCTCCCACG 1104016 24 100.0 55 ........................ TCTGGTGGAACCATAAACGGCAAAACCAATTCATCGTCCCAGACTTTGATTTTGT 1104095 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================================= ================== 16 24 100.0 45 GAATCTCAAAGAGAGGATTGAAAG # Left flank : GACCTCCCTCACCTTGGCCAGCCACTTCCTCCCGCCGCCCTCAACGACTAGGTACGACCCCACCGGCGCCTCGCACGTAAGAAGGGCGTAGGCGGCGGCCTCCTCGGAGCTCACCGAGCTTTTGAACTGGCGCGAGACAAAGCCGCAGGCCACGCGAAGAGGCGCAGGACAGTTAAAAAGCGTAAATCTATATATCCTAAATAATTCCCGGCGTTTAAAAATCGTCGTGCAACTTGCCCTTTCTTTCTGTAAAATCGTTCAACTGCTGCGCCGTTGTACCTTTGTCAAGCGGGGATCCCGTTTAAAAAACGGCGGACAGAAGTACGGCGGACGGCGGCGCCGACAGTAAAACACGCGCTTTCAACTGCCGGAGGCAGAAGGCCAGCTGTGGAAAAGAGACAACCCCACCCCTTAGCCAACACGAGAACACGCCAGAACTAACACAAAACCCACCAGAGAAAAACTTAAAAACAGCCAAAAGCCAAAACCCAGAAGGCCCG # Right flank : GTCCATTGGCGCTTAGCCGGCCTTTGAAGCGCTCTCCGCCTACACTTTAATCGATGGGCGGGGGCCTCGCCGGCAGGCATGCCCCCGGTACCGCATTACTTGGCTCTGACAGTTTCTGGCAGTTGGGTGGCCGATAGAAGGACTATCGTAGAGGATATTAGGGCGGTCAACGAGAGATCTCTCTCTAGGCCGAAAGGCAGCAGCAGGGCTAACGTGACTCCGAAGCCCCCTCCCAACAATCTGCCTAGAAATAACGTTATATTGGTCCCCGTGGCTTTGAAGTTGGCGGGGTAGACCTCGCTCATCCAGACCCCAAAGTAGGCGAAGAAGGAGGAGCCGAACATTAGGAGTATGAAAGATGTTGCCACCAAGTTGGGGTTATTTACGCCGAAGAGGAAGAGCAGCGAGGCCAAAACGCTTATCCCGGCGAACACATAGCTCGCCCTCTTCCTCCCGATTCTGTCGGAAATGCTGCCCGCGGCTGTGAATCCAATCATCCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAGAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //