Array 1 52026-52720 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQO01000007.1 Treponema pectinovorum strain Marseille-3-CSURP7641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52026 36 86.1 30 A..TT.A.........................G... CCACTTGCGATTACTGTTGTATTAACAGTT 52092 36 100.0 30 .................................... CGAAACAATCGCAGGCAACCAACTTTTGAA 52158 36 100.0 30 .................................... ACACCCAGAAAACAGTCCGACTTCCTGTTC 52224 36 100.0 29 .................................... TCTACCTTTTAATCGCCTTTACACGTTAT 52289 36 100.0 30 .................................... AAATAAATAAGCGTTGTCGCAAACGACTTT 52355 36 100.0 30 .................................... CGATACGTTTTTCGTTAATGTCATTCTCAA 52421 36 100.0 30 .................................... TGAATTGTCCTGTATTCAAGGTTCTCACCT 52487 36 100.0 30 .................................... TGTTATACGCCTATTGTCAACAATCCTTTT 52553 36 100.0 30 .................................... AACATTGCGTAACGCAACATACGCAAGTCA 52619 36 100.0 30 .................................... CCTATTTTTATCAATGAAAACGACTTAACA 52685 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : CCCTTGCACTGTCTCGTGTTATTCCTGTTTGCTTTGTAAAATCTCGTGCGGCTGCCTGCCATTCACCTATCTTTTGCCTTGCTCTTGTGTTGTCTACTCCTGCCGCTTCCTGCGTTAATGCTTGCCGTTTATATCGCCTTATGTTTCGTTCTATGCCTCTAAGTTTTTGCTCATCGTCATAGTATGATAGTTCCTCGCCGTTGCAGGTTACTGTCTTGCTTGCCATTTCGTCTAAGTCGTCTCCTGTGTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGGCGGCAGTTTATTCCGCACAATCCTGTCGTACTCCCCAGTCCGCAAATGCTGTACAATCCTTTCTTTGTGAAAATCTTCCCTTGCCATTCTTCGTATTCTGGTCTTGAGCCGATATGAGCGGAAACTTCAAACTTTTCAACTCCCAATTCTTCAGCATTATTTAATGTCTGGTTTGCTGCCGTTTGGTTTATCGATGTGAGGATAAAAT # Right flank : TCCGTCTGATGTATTTTCTTTTTTTGTATGGAAATACAACTCATCAGGCGGATTTTTTTTGTGCGATTATCAGAATAAAAGGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATTTTATAGTATTTTTCACAGGCATCCTTTCCAGAAAATAGTTTTGTATAAATTGAATATTGAACCATGGAAAATCCGTTATCTAATAAAAAATTCCTATAAGCAGTCGCTGCCTTTTGATCAGATTTTTCAACAACAGGTAAATCAAAAAAAACTAAAATCCACATAAGCTCATACCTACTCAATAATGGTAATTCCATTTAAATTGTCCTCCCACTCTGGCAGTTCAATAACAGGTTTCCCTTCTTCCAATGCATGAACATAAGAAGCCACTAGATATTGCATACTCTGGCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 132635-129965 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQO01000001.1 Treponema pectinovorum strain Marseille-3-CSURP7641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 132634 36 100.0 30 .................................... GCGTAGCGCACCGCGTCCATCGTGTGGTCG 132568 36 100.0 30 .................................... ATGAAATAGAAAATAAACTCTACGAAGCGA 132502 36 100.0 30 .................................... CTTTAATTGTTGCTGGGTTTTTGATTGTGG 132436 36 100.0 30 .................................... AAGGAGTGTTTGATTATGGAAAAAATCTAC 132370 36 100.0 30 .................................... TAAAATTAAAAGCGGTGTTAACATAGTCGG 132304 36 100.0 30 .................................... GATACCTTTTTTATTATTATTTTTGTTATT 132238 36 100.0 29 .................................... CGTTCTCCAGCAATCACAAACTACTGACG 132173 36 100.0 30 .................................... TGTAAACCTGACAAGGATATTTTATTTGGT 132107 36 100.0 30 .................................... TGATGGGCAAGACTACATATCTGAAATTAA 132041 36 100.0 30 .................................... AGCGTCAACGGTCGTAAAAAATGTTTAAGG 131975 36 100.0 30 .................................... ATACCGTGTATAATATAGAAAGTTTTTTTA 131909 36 100.0 30 .................................... ACGCCTGTTAATAACAATCATTTTAACTTC 131843 36 100.0 29 .................................... CAGCAATCGTTTCAGCGGTTGGGGCAATA 131778 36 100.0 30 .................................... GGGTTTGTTCATTTATTTTCTATGAAAGAA 131712 36 100.0 30 .................................... CAGGTGTGTTCAGTGGACGATAGATTTTTT 131646 36 100.0 30 .................................... TATTTTGGGTTCGTTGCGTACATTCAAGGA 131580 36 100.0 30 .................................... CGTCGCTTGCTTTTGAAAAACCGCCTGCTT 131514 36 100.0 30 .................................... TATAAAAACCGCCGTCGAAAAAGCGATAGA 131448 36 100.0 30 .................................... CAGGTGAGTTGTTGCCTGATGGAAGCCGTG 131382 36 100.0 29 .................................... GATTTTTGATACCTTTTTTGATACCTTTT 131317 36 100.0 30 .................................... CAGGTGTGTTCAGTGGACGATAGATTTTTT 131251 36 100.0 30 .................................... TATTTTGGGTTCGTTGCGTACATTCAAGGA 131185 36 100.0 30 .................................... CGTCGCTTGCTTTTGAAAAACCGCCTGCTT 131119 36 100.0 30 .................................... CGTCGCTTGCTTTTGAAAAACCGCCTGCTT 131053 36 100.0 30 .................................... CTTGAGTATTTGAATATGGGTTATATCGAA 130987 36 100.0 30 .................................... ATTTCTGCGATTTCAGTTATTCATATTCAG 130921 36 100.0 30 .................................... CTTTAATTGTCGCTGGTCTTTTAATTGTGG 130855 36 100.0 30 .................................... TCTGCTAAGTATGAGGTTGACGCCGATGCG 130789 36 100.0 29 .................................... TACATTCACTCAAGCACGTTGGTTTGATG 130724 36 100.0 30 .................................... CATAGTTTTCTAAAGCATTTTTTACCGCTC 130658 36 100.0 30 .................................... AGTTGTTCCATTTCTTCTGTGGTCCACTCG 130592 36 100.0 30 .................................... CTTCCAGCGCCCTCTCTTGCTCCGCCCCTA 130526 36 100.0 30 .................................... ATACCTTTTTATTAATTTTTTATTGTTTTT 130460 36 100.0 30 .................................... CATATCCGGTATATGGTCACATAACTGTCG 130394 36 100.0 29 .................................... CAGTAGGAATATCTTTAATAATTCCATAA 130329 36 97.2 30 ..............................T..... ACTACTATGTTACGGACTCTTAATTCTTCG 130263 36 100.0 29 .................................... TATTGTTTTGTACGCATTACAAAAAGTGC 130198 36 100.0 30 .................................... ATACGACTTACACATTCGTTGCAGGTGGTC 130132 36 100.0 30 .................................... CTTTTTACGTTCCCAGATTCAGATGTTACG 130066 36 100.0 30 .................................... CGTATTTATATTTATTCCGCCTGATTTTTG 130000 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.9 30 ATTATTTTACATCAAAGATAGAAATCAAACCACAAC # Left flank : TTTTGTATGATATGAGTTTTGACCGGATAAACGCTTATAAGATAATGTGGATTTTCTGTATGTTTGATTTACCGACAAACACAAAACCTCAGCGCAAACGAGCGAGCGAGTTTCGTAAGAACTTGTTGGAAGATGGTTTTGAGATGATGCAGTTCAGCGTTTACAAAAGATTCTGCGGAAGCAGAGAATCGTGCGAAGTTCACGAAAATCGAATAAAAAAATGGCTTCCGAGGGAAGGAACTGTAAGCATTTTGAAATTTACAGACAAACAGTTCGGTGAAATTCTGACATTTATCGGTGAAATCCCCCAAAAAAAAGAAAAAACACCGCAACAACTCCAATTGTTTTAACGTCGGCACTTGAAAAAGCTAAAAAGCAGAAAAAACAGGCTACGGCGTAAAAAAAACAAAGAAAAGCGCATAAAAACGTAACTTTTCCTCATTTTTTTTACACTGTAAACCAGTCTAAATCTTTGCATAATATGGTTTTATAAAACTCAT # Right flank : TAAAATGCTATTGACAGTGGTTGGCTTGTATCGGTTATCAGCAATTTTCAGATCCCCGACACGACAATTCTCCTGTTACATAGATAAGTTCCCAAATATGAGATACAATGAATGCGATATCGCATATTTTCGTAAAATGGGTTATTGAGCAGATGTCCCCATCTTAAGCTTTTCTGCAAACACCTGCAAAAATATTTTATGGAGAACTGTTATGAAAATCGAACACATCGCCATGTATGTAAATGATTTAGAAAAAGCAAAAGATTTTTTTATCGAATATTTTGGCGGACGAGCAAATGCCGGTTACCACAATAAAACTACAGATTTTCGTTCGTATTTTATAAGTTTTGATGGTGGTGCTCGGCTGGAAATAATGAACAAGCCCGAAATATCGGATCCAAAAAAACTTCCGACACGCACTGGGTATGCGCACATCGCTTTTTCAGTCGGCAGCAAAGAGGCAGTAGATGAACTGACCGAAAAGCTAAGACATGCGGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATTTTACATCAAAGATAGAAATCAAACCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //