Array 1 533233-536263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022387.1 Capnocytophaga stomatis strain H2177 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 533233 36 100.0 30 .................................... GTTAGCTTCTGTAGAAGCACAGATTAGAAA 533299 36 69.4 84 ...................TGCT.T...T.CATG.G TTCCTTTGAAAAACAAATAAAAAACTCACGAATAAAATGAGAGCAGTTCCAACTGCGAACACGTACATCATACCCCCATTGGTC 533419 36 100.0 30 .................................... CTCAATTGATGCTCGTTATTTTGGAGCGAA 533485 36 100.0 30 .................................... ATAAAATATTTGATTATCTTTATGATTAAT 533551 36 66.7 82 ...................TGCTTT...T.CATG.G TTCCTTTGAAAAACAAATAAAACTTCACGAATAAAATGAGAGCAGTTCCAACTTTCCTGTGCGAGGGCAATTTGTAACGCCA 533669 36 100.0 30 .................................... AAAATGAGTTTTATGCTGAATTAGGACATT 533735 36 100.0 30 .................................... ACAATCACGTAGCTTCTCTAGTAGCTAGTT 533801 36 100.0 30 .................................... ATGCTGGTTTAATTACTATTACTAATTATA 533867 36 100.0 30 .................................... TTGTTGGCAGAAAACGAACAAATCAAGACG 533933 36 100.0 30 .................................... GCAAATGGCTTAAAGACTACGAAGAGGAGA 533999 36 69.4 82 ...................TGCT.T...T.CATG.G TTCCTTTAAAAAACAAATGAAAACTCACGAATAAAATGAGAGCAGTTCCAACTGAATGATATACTGACTGTGAATGAAAGTA 534117 36 100.0 30 .................................... CCAAAGAAATATCAATGTTGCAAAGGTCGG 534183 36 100.0 30 .................................... GTCATACCTCTACCTTTGCTTACTCTATCC 534249 36 100.0 30 .................................... GTATGAAGAAAATCCTTTTATGGTAGAACT 534315 36 100.0 30 .................................... AATTTTTTGTTCCTTTAGAGATAGAAAAAG 534381 36 100.0 30 .................................... AACAATTTGTACAAGAACATACAGGGCTTT 534447 36 100.0 30 .................................... AGTAGAAAGAAAAAGTCCGACAGATTTGAA 534513 36 100.0 30 .................................... TAAAATTCTTTCTTCTTCACTCATATCAGT 534579 36 100.0 30 .................................... GAAGAAATGCTTGGTTTGTAAAAAACTCTA 534645 36 100.0 29 .................................... TTCTTCGGTAAGTGGTTTAAAGTTGTCAA 534710 36 100.0 30 .................................... GGCAGCGGTTTGGGTATCAGCCGCCTGGGC 534776 36 100.0 30 .................................... CTAATTCGTTTTTTTTTCAAAAATAAAATA 534842 36 100.0 30 .................................... CAGAAGCTAAGAGTCTAAGAAGTGTTATTG 534908 36 100.0 30 .................................... GGGGCTGATGATGTGTTAGATAAAAAAATT 534974 36 100.0 30 .................................... TCGAGTGCTGTAATGGTGGTATGTCCTGTG 535040 36 100.0 30 .................................... TTAAAGACTTTTTTAATCTTTTCGATTTCT 535106 36 100.0 30 .................................... CGATTTTGGCTTTTAGTTCCTTGTTTTTTA 535172 36 100.0 30 .................................... CATTGAGCGGATTTTCTCAAACGAATCCTT 535238 36 100.0 30 .................................... CTTGTCTTGTTCGTTCCAATCGACTGTATT 535304 36 100.0 30 .................................... ATATATTCTGTTTTTCCGCCGTAATGTCTT 535370 36 100.0 30 .................................... TTTCTTTCGGATATAACGAAATAGCCATTA 535436 36 100.0 30 .................................... TTTTTCATCTCTTGAACAAAGGTCTTTTCT 535502 36 100.0 30 .................................... CTTTCTGCCATCGAAACTATGGGTTTCGGT 535568 36 100.0 30 .................................... TCGATAAAGCTTCGTTAAATTTATTGTAAT 535634 36 100.0 30 .................................... ATTGGCTTTCGCGTACAATGAGCTTTGCTC 535700 36 100.0 30 .................................... TAGACTACACAAGAGACCCAATCAAATCTA 535766 36 100.0 30 .................................... ACATCACACGAACGATTGTTTAATTTTTTG 535832 36 100.0 30 .................................... ATCTGCATTAGTGATGTATCACTCGCCTTT 535898 36 100.0 30 .................................... GAGTACACCTGCAACGGCTAAACCATTAGA 535964 36 100.0 30 .................................... TATTTGTTTTGTGGTGCAAAAGTAGTGCTA 536030 36 100.0 30 .................................... ATCTGGGCTTATATATTATTCCGACACCTT 536096 36 100.0 30 .................................... TACCACAAGAGGCATATTACTCAATTATGG 536162 36 100.0 30 .................................... GTTAGGCACTTTTGCATCCTTTACAGTTAC 536228 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 44 36 97.9 34 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : AACAGGTCCGGGGGTTCGAATCCCTCTCTCTCCGCAGTAAAGGGTGTAAATCAAGTAGTTACGAGATTTACACCCTTTTTTACACCCAAAAATATCGAATGATTTTTATTCCTTCCTCACATTCTTCATATTTTTTCCCAGATTTATGGTTTTAAATTTTCAGATTGGCTCAGAACTAAGCTTTTGAGTTGGAAACCTCAATTCACACTTCACACAAAACACTAAAAATCAAATAATTAAAAATAAAATTCTTATTAATTTCCGCACGTGTTGTCCCAATAATATAAATTCAAAAACATAATTTGTAACACTTTTCACACAAAAACAGAAAAATAAAAACCTCCCGATGAAGTACATCGGGAGGTTTTGCGTTAAATAAAATGTTGTGATTACCCTTCAAATGCTTGCATTCATAAGTTCCTTTGAAAAAACAAATAAAATTTCACGAATAAAATGAGAGCAGTTCCAACACAGAGGTAACCTTGTAACCTTGACCACTT # Right flank : CCTCAATGCCAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCCTATATTTTACTTTATCAGTGCTTCTTTTTCCCTTTTAAATATCTCGGAAAAGTACTCGGCATAGGTTTTTTCTTTTTCTATTTTGCCGTATTTTTCTTGACAATAGTCCCAAAATTCTCTTTTAGGCAACTGATTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAAGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGTTAATGTTCACATCTTCAGGTTCAGTATTTAAGTTGAATACCTTATAGCTCTCCACATCTTCATTTTTAAGTTGCTTTAAAAGTCCGTTGAGAATATAGTACTTGAAATTTTGATTATCCCCTTTTTTTAATATTTCCTTATCTTTTACCTTTTCCAAAATATACTCCTCTATAAGATGGACTTCCTTCAGCAGTTCTTCCCTTCTCACTTTTTCATATTGTTCTATTTCTCTTTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2673212-2677800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022387.1 Capnocytophaga stomatis strain H2177 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2673212 47 100.0 30 ............................................... AAAGAATTACGCATTGAAAATTTCAAAGGC 2673289 47 100.0 30 ............................................... TGTTTTGTTTAAATTTATTTCTAATCCTTT 2673366 47 100.0 30 ............................................... CCACGAAATACCCGTTCCGATAAATTTCAC 2673443 47 100.0 30 ............................................... TCAATATAGTTAGTTAAAAATAAAAAAAAC 2673520 47 100.0 30 ............................................... TGCAGAAGAAAAAGTACAAGCACCAGCAGA 2673597 47 100.0 30 ............................................... GTTCCATACGTCATAATAAATTATCCGATT 2673674 47 100.0 30 ............................................... CCCGTTCGTGCTACTGACAAAAATTATTCT 2673751 47 100.0 30 ............................................... TGTAGGATTTGTAGGAAAATTTTTTGTCTT 2673828 47 100.0 30 ............................................... TATATCGCTAGCGGCATCATCTCTGCTGAC 2673905 47 100.0 30 ............................................... GAGTGCGGAGGCTTGATTCATCGTCAAGTC 2673982 47 100.0 30 ............................................... ATTTAGTAAGGACAAATGAAAGTAAAACCC 2674059 47 100.0 30 ............................................... TTCTACACTTAGTCCATTAAAAGTATGTTC 2674136 47 100.0 30 ............................................... GGAGATATGGAGATTATAGATTTATAAATT 2674213 47 100.0 30 ............................................... AAACATTCATATAATCAACGAAGCGGCCTT 2674290 47 100.0 30 ............................................... GGCCGGGACGCCTTCTTTAGTCACGGCTGC 2674367 47 100.0 30 ............................................... GAAAATCAGCCTGTACCTATACAAGATTCC 2674444 47 100.0 30 ............................................... GATTTATATCAGTTACACTTTTATTTTCTT 2674521 47 100.0 30 ............................................... TAGGATTTTAAAAGAGGAATTTGAGCGGCG 2674598 47 100.0 30 ............................................... CCCATCGGCTCTGGTAAGTTGTCAACAACT 2674675 47 100.0 30 ............................................... GAAGAGCAACAAAAGCAATTACAAATTCAG 2674752 47 100.0 30 ............................................... TATTTATTTTCGCATTAATTGCGATTGTTG 2674829 47 100.0 30 ............................................... GAAGCACAATTAGTTAATAAACCAACAAAA 2674906 47 100.0 30 ............................................... TGCCTTATTTAAAAAATTACTTTGAGCTTG 2674983 47 100.0 30 ............................................... GAAGCACAATTAGTTAATAAACCAACAAAA 2675060 47 100.0 30 ............................................... TGCCTTATTTAAAAAATTACTTTGAGCTTG 2675137 47 100.0 30 ............................................... GAAATGATTTTCTGTTTTTTAGATACCCCA 2675214 47 100.0 30 ............................................... GACTTTGGCGTACGGCAAGCCTGAACGTAT 2675291 47 100.0 30 ............................................... ATGTAAAATGTGTGGTAATAAAAAAACACA 2675368 47 100.0 30 ............................................... GACTTTGGCGTACGGCAAGCCTGAACGTAT 2675445 47 100.0 30 ............................................... ATGTAAAATGTGTGGTAATAAAAAAACACA 2675522 47 100.0 30 ............................................... AAGTATCTTAATTATGACAGACTTTTTTTA 2675599 47 100.0 30 ............................................... TTACTTATACGTGTTCTTTATACACTATTT 2675676 47 100.0 30 ............................................... AAATAATATACTTGCGTCTATTTCGGATTT 2675753 47 100.0 30 ............................................... ATTCAAAATTAAAGGATACATTTAACAATC 2675830 47 100.0 30 ............................................... GGAAGTGCTATACACGTTTACGCTGGTAAT 2675907 47 100.0 30 ............................................... GGAAGTGCTATACACGTTTACGCTGGTAAT 2675984 47 100.0 30 ............................................... GCCAATGATTTACATCAAGAACTTGTGTAA 2676061 47 100.0 30 ............................................... GAGATATTAATAGCAAAAAAAACAATCAAC 2676138 47 100.0 30 ............................................... ATGTGCCTCGTGCGTCTTCAAATCCTCGTC 2676215 47 100.0 30 ............................................... CCGGAACTTCACTAACAGCAAGCCCCATAA 2676292 47 100.0 30 ............................................... TAATTACTCTTTCAGATTGGTCTTTGAGAT 2676369 47 100.0 30 ............................................... TTATAAACTCACGGCGTGAGGGTGTCGTAT 2676446 47 100.0 30 ............................................... TAACAATACCCGCTAATGCGCACATAATTC 2676523 47 100.0 30 ............................................... TAGCGAACAAGAATTTCGATAAAGAACGTG 2676600 47 100.0 30 ............................................... CTTCTTTAGCTTCTAAATATTCGCCTTCGT 2676677 47 100.0 30 ............................................... TGTCCGTAGTTTCTCTAATTGTATGCCAAC 2676754 47 100.0 30 ............................................... TAAAGAACTAATTGATAAGTTAAAAGAAAA 2676831 47 100.0 30 ............................................... ATTCAGGAGCAGGATAAGAAACATAAAGAA 2676908 47 100.0 30 ............................................... CACGATGTTCTCCTTACCGAACTGCTCCTC 2676985 47 100.0 30 ............................................... ATTGGGCGTTGTTGGTTCTGGCGAAAAGTG 2677062 47 100.0 30 ............................................... AGAAAAAAAATATGGACTTGCAGCTCCCAT 2677139 47 100.0 30 ............................................... AGAAAAAAAATATGGACTTGCAGCTCCCAT 2677216 47 100.0 30 ............................................... CTACATCTTTTCTACTCAAAAATAACTTAC 2677293 47 100.0 30 ............................................... ATCTCCAGCAGGACAAAAAAGCACATATTT 2677370 47 100.0 30 ............................................... CACGATGTTCTCCTTACCGAACTGCTCCTC 2677447 47 100.0 30 ............................................... ATTGGGCGTTGTTGGTTCTGGCGAAAAGTG 2677524 47 100.0 30 ............................................... TTATAAACTCACGGCGTGAGGGTGTCGTAT 2677601 47 100.0 30 ............................................... TTTATTTTGCATTGTTTTTAAGGCGTTTTG 2677678 47 100.0 30 ............................................... CACGATGTTCTCCTTACCGAACTGCTCCTC 2677755 46 91.5 0 .....................................-CG......T | ========== ====== ====== ====== =============================================== ============================== ================== 60 47 99.9 30 GTTGTAACCAATCACAAAGTTACGAAAATTTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAAACTAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTTCATTCTAAAGTACGCGAAGATCCGCCACCTACTTTTCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTATCCAATCCAGTTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAATAAAAATAATCCCCTGAAAAACAGGGGATTATTTTTTGAG # Right flank : TAATTTTTGTCAATCTACAAATACTTTATATCTTCGCGTAGTTTTGGTGGGGAATTTGTATTTTCGTTAAAAATAATCGGAAAGGCACAAATTTAAAAAATGTAGAAAAATGTATTCAACAACTAAGGCAATTGTAATTTCAGCTTTGAAATATGGAGATAATAGCTTGATAGTTAAATGTTTTACCGAAGATTTGGGTGTTCGTTCGTACTTGCTTCAAGGCGTTTTATCCTCAAAAAAAACAACATTAAAACCAGCTCTTTTTCAGCCTTTTATGCAACTGGAATTGGTGGTAAGTAACAGAAACACAGCCTCTTTGGAACGCATCAAGGAAGCAAAAGTAACCAAAGTTTATCAGTCCATACACACAGATATTTACAAAAGTTCCGTAACAATGCTCTTAGCCGAAATTTGTTCTTTTGCCTGTGCTAATGAGTATGCAGAACCTGATTTGTATCAATTTTTAGAGGAAAAATTATGTTTTTTTGATGAAAATGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACCAATCACAAAGTTACGAAAATTTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //