Array 1 137332-138238 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 137332 35 100.0 39 ................................... TCACTTGTATCATATCTTTCATTATCTCTAATTCTTATC 137406 35 100.0 37 ................................... GCCATTTGAATCCTCCTTGCGAAAGCCTTGTGCTACC 137478 35 100.0 43 ................................... CCACTGAAGTGAGCGTTGATTTTAGCCGTTACTTCTTTTTTTG 137556 35 100.0 38 ................................... TTCAGGATTGAGGTCAGTAGATATATCTCGACCAACGA 137629 35 100.0 38 ................................... CCAGTTCCGCCGAATGAACCTTTTTTATAAGACTCAAG 137702 35 100.0 35 ................................... TGATTCATCTTTAGTAGATCTGCACAATTCAGAAA 137772 35 100.0 39 ................................... TAAATGATTGTTTTATCATTAGTGTGTCTAATGACGATA 137846 35 100.0 31 ................................... TATAATACATCGCCTTCTTTTAATTCTCCAT 137912 35 100.0 37 ................................... TATACAAACTATTTGATTTGTCTTAGATCTGCATAAC 137984 35 100.0 44 ................................... TCTCCCAAACCACGGATAAGACCTTTTAGTACTTCATTTGGAGT 138063 35 97.1 35 ...........A....................... TCGCATATCACGAATGTTATTCTCGATTTCTCTGA 138133 35 91.4 36 ...........A.....T.....T........... AATCGAACTAGCTTGCCGATATGAGAACGGCTTTTA 138204 34 80.0 0 ...........A.......-...T.A.....TCG. | A [138233] ========== ====== ====== ====== =================================== ============================================ ================== 13 35 97.6 38 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACTGGAGCTTTTATTAAAGATTACAATCTACGCATGGGTATATATGGTCTTGAAGGTGTAAAAATCCGAGGCTTTCGTGGGCAAGTCGTTATGCAATTTAAAAGGAATCCAGAGTTGCAAAGGATTTTGGCGTTGTTGAGTTACTATAGCGAATTTACTGGACTAGGTATTAAAACGGCACTTGGCATGGGCGGTGTGAAGAGCGAAATTATAGTTTAGTTTTATGAAAGTATCTAAATTAATATATTAATGGTAATACTGATAGCTAAGTGATTTAATTCTTTTTGAAAACAAATGAAAAGAAAATGAGTTTAATTATTGACGTAAAATCTATAAATCCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACTAGTATTTACCTATGCTCATCGACATTTTAGAGCCAATGGGAGCACAATTTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCCCATGAATACTGGCTTTCTAAGACACGCT # Right flank : CAGACTGTGAGATAGAAGTGGCACAGCGCAACGATGAAATCCCCATATTGCAGGTATCTATACAGATTGAAGGTAAATAAAGGTGATAAGGGGTTGCACTATATTTTTATATCTAATAGAAAACGAGTGAATTTTTTGATTCACTCGTTTTTTAGTCTTAGTTTTTTTGAATTTGGTTATATTAGATTTCATCCTATACTAAAGATGTAGCCGATAAGCGGTAATAATTTTAATATGCTTAGGGTATCTTAGTTTTGTATTAAATCATTGGTAGCTTGTTGGGGATTGTAGAAAATATGTATAGTGTTAGGTATAGGAGGTAGTATATGAACGTTAATTGGAATGGATTATTCTAATAATAGTATATTTAGTTGTAATGATAGGAGGGATGTTATGTCGCCTTTAGCAGTGGATTCTGCAGTAGCAGTGTTAGTAGCGGTGCTTGATGCACTTGAAGAGTAATTTTATTTATGTATGTTGATCGGTTAAAGTTTGTAAGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 146627-147242 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 146627 35 100.0 36 ................................... TAGCAAAAACTTCAGTATGACGAACACCAACAATCT 146698 35 100.0 39 ................................... TGTTCTGCTGTTCTATTGCTTGTTGTAATCACTTTTTTA 146772 35 100.0 38 ................................... TTAATAAACTAACGATAGATAGGTACTGCTATCTTGTC 146845 35 100.0 35 ................................... TTTAAGAATGTTAAGTTTGTCATGATTATATCCTC 146915 35 100.0 38 ................................... TATCAAATTCTTTGATATCTTTTCGTAGATATTTATCA 146988 35 100.0 37 ................................... CCACATGCAAAACCATGTGCTACAGCATAATAAGGCA 147060 35 100.0 38 ................................... TGAGACTGCCATATTAATAAATTGAGTCATGTTAGATT 147133 35 97.1 37 .......................T........... TCATAGCTCATGAATGCCATGCTATCGCCTTTGGATA 147205 35 85.7 0 ....T.....C.....T............C....G | G,C,G [147234,147237,147239] ========== ====== ====== ====== =================================== ======================================= ================== 9 35 98.1 37 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : TAGAAAGATTAGTCGTGTAGATATGTAATTGTACTTTTGTTGTTTCAAGCTTTTAGTATTGGAGGAGGTGTTTGTATGGCACTATTTGTTGAGTTTGGTTTAGTTCATGTTTGTGTTGAGGAGTAATTTTGATCATTATAATTGAATCTGATGTTAATTAGACCTATTCATATGATGTCTCATATGAGTAGGTCTTTTATATATGTAACATTTGGTCACAATCATTTTCTACTGTAATAAATGTATTATAAAATTTGCTGAATATAAGTTTTATCTGTATTTGGCTAAGATGATTAAAAAAGAAAATGATAAGGAATATTGACGCCAAATTCAAAAAACCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACCAGTATTTACCTATGTTCATGAGCATTTTTAATCTAAGGGGAGCACAAACTGACCGTTTTCGGTATGAGGTTTTCCAAAACCTATTTTTTAGCCCCATGAATACTGGCTTTCTGAGAGACACT # Right flank : GGGTGCTAGACTGCAGAGGAGAGAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACGAAGGTGACAAAGTAACAGTTTTTATCGTTTATAATTGTGTATTTTCATATTTAATGTAAAAGGGTGAATCTTTAGATTCACCCTTTTTTGCGTCTTAGTTTTTTTGAATATGGACTTGTCGATTTTCATTCTATAATTATTTTGTAGCCCAAAGGGAAATACTATGAATTATAAAGATGATAGTTCGCCTTAGTTTTTATGAATTCAATTGTATCTTTGATAAGGTTATACTATGGATAGTTAATTTAGTCATATGAGTTGGGAGGTAATGAATGACTTGTAGAATTGGATATTTGAAATTGTAAATGTCAAAGGATTTGTTTTGTTTATATGTATTTTAGGAGGAATTAATATGCTACCATTATTTGCAGCAGCAGCGGCCGCAGCCGCATGGGAAGGTTTTGCAGCAGGTGTATTATTAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 148523-149567 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================== ================== 148523 35 97.1 40 ...A............................... GAACATAATTAGAAATTTTACTCATAGGAGAACTCATTAA 148598 35 97.1 33 ...A............................... GTAGGGGCTTAGCCTCTATCCTTTCTTTGCTTA 148666 35 100.0 38 ................................... CGTAATGATGCTGCAGACATAGCGATTGTTGCATACTC 148739 35 100.0 40 ................................... CGATAGATAGGTACTGCAACCTTATCGCCAGGTTTAATAG 148814 35 100.0 39 ................................... ATAGCACATGAGCGAATTCACCCCTAGCGCTATGAGGGA 148888 35 100.0 41 ................................... CCTTCTAATTCTGCGCGTTTGCCTTTAGAGTTGATTCCTAA 148964 35 97.1 38 ...........A....................... TAGCTTCAGCCCATCTATAAGGAACTTGATATTTATCA 149037 35 97.1 36 ...........A....................... CCGACATACAGTTGCGTCGGCTTTCCGTATTTGTCA 149108 35 97.1 41 ...........A....................... AAAGTTTCTCTTTGCTGTATCATTACTTCACCTTAAGTCGA 149184 35 94.3 39 ...........A.C..................... GAGTCCCAGTACATCAGACCAGCCCCATCATTATTATAA 149258 35 91.4 40 .........A.AT...................... GCTCGGAGATAATTGGATCACCTACTATTTCGCAAATGTA 149333 35 74.3 88 ...........A.......G.....A.G.GCGC.G AAGGGTGCGAGACAACAGAGGCGCAAAGCGACGATGAGGTCCGCACATCTCAAATACCTGAACAAAGTGAAGGTGAAACAGATATGAT 149456 34 85.7 44 .AG.T..T...-....................... ACGTCAGAATTTGTATTTGCAGTGATTTCTTTTTTCCAGAAAAA 149534 34 77.1 0 ..........CA......A.....A....-.CGT. | ========== ====== ====== ====== =================================== ======================================================================================== ================== 14 35 93.5 43 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : GTTGATGAAGCAGTAGATTTTGTACTAGACGAATTATTTGATTGAGTATAGGAGAGGTGTACATGTCAACTCTAATAGGATTATTATTGCTGTATATATTCGCTTGGTATCTTGAGGCTTAATAGTAGAAATAATGATGGAATATAATTGTATATAGGCCTATTCATATGATGATGTATGGATAGGTCTTTTTATATGTAGTAGATAGACTAAATCCTTTTTTAGGTAGTCAAATTAAGTTAAAGGTTGTTAAACTTAGATACTATCTTCATTTAATTAAAAATAAGCCATAAGTCAGAAAGAAAACGATAAAGAATATTGACGTAAAATCGAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACTAGTATTTACTTATGCTTATCGGTATTTTTGATCTAATGGGAGCCCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACTTAATTTTAAGCCCCATGAATACTGGCTTTCTGAGGTATGCT # Right flank : CGAAGAATGTGAATATCTAACTTAAAAATTACATAATAATAAAGAACTGTGTTCTTGTGTATGTCACACAAAGATACAGTTCTTTTTTTTGTTCCTAGTTTTTCTGATTAGTTCACTTTCAGTATGATTCGTATAATGAACTCAACAAGTTTAATTGGTCTTATATAGGAGGTAGTATATGGCAATGTTGTTTTTAACTTTATTGGTGTGGTTTGTATTACCATCACGGAATGATTATTAAGGAGGGTATTATGGAAAATTTACAGCAAGAATTAAAGTCTATGTTGTCCTTATCAGGGCGTATGAATCGTCGCTCTTATTTTATGAATTTGTTGATGATTATTGGTATTGGCTATCTTGGGGGCCTTTGTATTAGTCTTGCCCCTGTATCAAAGTTTTTCTGGGTATTGGGTTGGTCAATCATAGGGTATTCTGTTGTTCGAGAGTTAGCTATTGCATCGCGACGTATTCATGATTTAAATGGACCAACTTATTTAGCA # Questionable array : NO Score: 8.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 166057-166303 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 166057 35 100.0 34 ................................... TTCTCGTCAGCTTCAAGTTGGAGACAGAGTTGCA 166126 35 100.0 38 ................................... TGGATTTTCCATGTAACGGTTGAGAACCTACTTTGATT 166199 35 100.0 35 ................................... CGCATCTTCGGCATTTTTAAAATTACCGACGACCA 166269 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 4 35 100.0 36 GTTGGAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACCTATAAAACGATAGAAGAATACAAAAAAGCATTAGATAAGTATGTATTTTATATGTATAAGTAGAGACTATATAGAAAAATTTATATACCTATTTTTATAAAGATTTCCATACAAAATTTTATTTATAGATTGAGGTTATGAGCCTAAAACATAACTATATAGTTATGATCTTTATGCCTTAAAGAATAAAAGAACTCGCCTAACAAAACGTTAGGAGGGTTCTTTTGTTTAAACTATTTATTGAAAAAAATTAACTATCAAAATTTTATTAATAGTATTTCCTTAAAATATAATGAAAAGAAAATGAATTAAATATTGACGTAAAATATGAAAAACCTTATAATTACTATAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATCGGCATTTTTAATCCCATGGGAGTCTAATCTGACCGTTTACGGTGTGAGGTTTGCTAAAACCTATTTTTAAGCCCCATGAATACTGGCCTTCTGAGGTATGCT # Right flank : CGGAATATTAACTTGATTTCTTTAATCTGACATATTTTACCTATTACAATAGCACTTACTATTTAGAGTATGTACGATATATTAATAGAATCATTAGCGTTAGTATGGTATCTTGATAGATCTATTGTATTAGAGCTAATGGTTCTATTTCTTTTGTTTGTGATATAATGTAGGTAGTTTTGATCCTTGCAAAAACAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATGTTATTTTAACTTGCTAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGGGTTAAATTAAATAATCCCCTGATGGGGACGGAAACGGTTTGCCGATAAAGGGAGAACGGACGCATGCTGTTTTTTTAAGTTAAATTAAATAATCCCCTGATGGGGACGGAAACAAATCATCTTCTTTGATATTATTATCAAACATGACTACATCAAGTTAAATTAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 5 166636-167598 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 166636 35 100.0 43 ................................... GGTTTGCCGATAAAGGGAGAACGGACGCATGCTGTTTTTTTAA 166714 35 100.0 43 ................................... AAATCATCTTCTTTGATATTATTATCAAACATGACTACATCAA 166792 35 100.0 42 ................................... TGGCTTGCAGCAATTCTCGATTGATAAAGATTTTCATTTCAA 166869 35 100.0 43 ................................... GTTTTAGATTTATTCCACTCAACGGGTACTGTAACAGTTAGTA 166947 35 100.0 42 ................................... CTTGCATAATACGCATAAGCATAGCATTCTGTGCTTTCATTT 167024 35 100.0 41 ................................... ATTGATATCAAAATATTGTATGAATGCTCTAATTACGAAGA 167100 35 100.0 42 ................................... AATAAAACACCAAGATTCATATTATCGTTTAGCTCCTCTAAA 167177 35 100.0 43 ................................... TATCCACCTTTTTCTAAAGTATTGATAGCCTCAGCCATAGAAC 167255 35 100.0 43 ................................... TCGACCTTTTGTTGAGCTGCAATCTTTGTTTCTACAGATGCAG 167333 35 100.0 44 ................................... CTATATCCCTCGTATCTAGTATAATCTACGCGTGGGCGTAGATC 167412 35 100.0 39 ................................... AATAGCACCACTTGTCGCAATACGGAAATGGAATACACG 167486 34 91.4 43 .......A............T.-............ TCTTTCGTAAATACAAGATTATTCATAATTTGTTGGCGCATCG A [167505] 167564 34 82.9 0 .......A.G........A.T.-..A......... | T [167582] ========== ====== ====== ====== =================================== ============================================ ================== 13 35 98.0 42 GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC # Left flank : TGCTTACCGTTTACGGTATTGAAACTGGATTTTCCATGTAACGGTTGAGAACCTACTTTGATTGTTGGAACAGTGCTTACCGTTTACGGTATTGAAACCGCATCTTCGGCATTTTTAAAATTACCGACGACCAGTTGGAACAGTGCTTACCGTTTACGGTATTGAAACGGAATATTAACTTGATTTCTTTAATCTGACATATTTTACCTATTACAATAGCACTTACTATTTAGAGTATGTACGATATATTAATAGAATCATTAGCGTTAGTATGGTATCTTGATAGATCTATTGTATTAGAGCTAATGGTTCTATTTCTTTTGTTTGTGATATAATGTAGGTAGTTTTGATCCTTGCAAAAACAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATGTTATTTTAACTTGCTAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGG # Right flank : CCCGCCACCACGAATACCCTTAGTGTTCGCCAACGGTACAAGTTAAAAAGATAATCCCCACTAGGAGTCGGTTTTTATCTCAAAAACTCATATGAGTACAAAAATATAACCAGTATATTCTTTTTAGTGAATATACTGGTTTTTTGTATAAATCTGGTAGTTTTCTATTGGATTAAATTGGAAATGAATATATAATGAAAAAAGAGAGCTTTAATTCTTAGTAGTGTTTGGCGGCGATGTGAAGGCTAAGACATTTGTACTACTGTAGAAATTTAATCGTTATCATCTTTAGACCTAAATTGATTCCTTAGCATATTCATTTGTATAAAAGGAGGCGACTATATGTCATCCTTATATGTTACAGAAGCAGGATCGTTTATCAAGCGTGACGGTGGTCATGTTGTAGTTGGTCGTAATAATGAAGTATTGTTTGAGGTCCCTTTAGAGCGAATCGAAGATATTACTGTTTTTGACTCAGTATCTATAACAAGCTCATTGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 6 169542-170185 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG770200.1 Veillonella sp. 3_1_44 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 169542 23 95.7 53 ........G.............. TCTATTACAAAAGATCTAATTGCTACATTCAAAGCATTAGAGTTAAATTAAAT 169618 23 100.0 55 ....................... GTATAGTCTTCTAAAATTATATCGTCAATTGAGAAATCATAGAGTTAAATTAAAT 169696 23 100.0 54 ....................... ACCAAAATATCTTTTAACCATTCGTTTATTTTGCATCGAAGAGTTAAATTAAAT 169773 23 100.0 54 ....................... AGAATAGCAATAACTGCAACTATGTTTTTTACATTTATTAAAGTTAAATTAAAT 169850 23 91.3 54 G.......G.............. TCAGCTGCAGTCTTGGGAATCATAAAGTGCATTCCGTTTACATGTTAAATTAAA 169928 22 91.3 56 ........T.-............ ATGGATCCAATAATCCATATGGACGCCGCCCATTTTAAAGCAGGTTAAATTAAATA A [169935] 170006 23 95.7 55 ........G.............. TTCCATGGATTATAAGTGTATACATGAGCCGTACCATCTGTATGTTAAATTAAAT 170084 22 82.6 56 ......A.T.-....T....... GAATTGGCTTGTAGCATTTTATTAGTGATGATGTTATTGTCAAAGTTAAATTAAAT T [170086] 170163 22 78.3 0 ..-.....TT.......C....G | A [170174] ========== ====== ====== ====== ======================= ======================================================== ================== 9 23 92.8 55 AATCCCCTAATGGGGACGGAAAC # Left flank : GCGTTTGAAGCATTGCTTAATAGGAAACAATATGATGCTATGATGCGGCGAGCTAGTAAGATGATTAATCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATCTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGTATCGTACTTTAAATATAAATAGTTACTCTCGATTAATACTGTTACGATGTAGAGGTGTAATTAATAATAATAGAATCATTAATATTGGTAAAAGTATTTCAGAGCTTGATGTTTTGTATTGATGATTCTATTATTGTATTATCTATTTTCTTATATGATATAATGGGTCTAGAATTTAACTCCTGAGAAATTAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATGTTATTTTAACTTGCTAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGGGTTAAATTAAAT # Right flank : GGCACTACCTTATTATTGTAGGTAGTGCCTTATGTATAATCTAAGGGTTTAATTGTTTTGTATTATAAATACTTAAGGTTTTGTTACTTTCTCTCTTAAAATGAGGGGTGGATTATTGAAATAAAATAAGTGATATTTATAATATATTAAGTAATTATATTTATTATTTAGTGTGTATAAGATTGGGGAGCTTTCAAAGGATAAATATCATTTGCTATTTCCTAAGATTTCATTATTTTCGAGATGTGCTCGACGTTACGACTCGTCTGATTATTTTTTAATATGATAGAGATAAAGGTATATCATCAAATTAAGATGAATATGTACAATTGTATTAGATTAGTATTCTTGAACGGATTTATTTTTGAGTACTGACAATTAAATTTAATAATAAGATGTATAATAAAGTATAGTGATTCAAGCAACATAATTTGCATTAGGTATACTCTTGGCAAACCGCATATGTGAATGTGTATGGTGTGCAATTCAATGATGTAGTT # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.76, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //