Array 1 748-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYC01000027.1 Pseudoalteromonas luteoviolacea CPMOR-1 contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 747 28 100.0 32 ............................ TTCATATACAGCGTCTTGACTTTCAAAAAACT 687 28 100.0 32 ............................ TTCAAGTATTTCTTGGCATTCTTTTTGGAATT 627 28 100.0 32 ............................ AGTATTAGAATTTGCTAATAACGCGCTTCGTC 567 28 100.0 32 ............................ ACACAATATTCCAGCGCTCACAAGAGGTACCA 507 28 100.0 32 ............................ ACAACACAGGCGTTTGCTACTTTTTGCTGTAG 447 28 100.0 32 ............................ TAAACGAGTTTGACCAGGATTAAATTGTGGTT 387 28 100.0 32 ............................ TGAGATTTGCGAGAGCTAGAACTGGTGTGCTC 327 28 100.0 32 ............................ TATAAATGATTTTTTAATGCATCGATAATGCG 267 28 100.0 32 ............................ AAATCCAGACATTGCATCGAGCGAGTCACCTG 207 28 100.0 32 ............................ ATATTTCTCGGATCGACTTAGCGCGTGATTGC 147 28 100.0 32 ............................ TTAGCTAGAGTTGCTAAAGCGCTGAACCCTGC 87 28 85.7 0 .C.......................GTG | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAATCATGAAAAAAGTACTACTCACTGCGATTAGCTGTTTAGGAATGAGCGTTGCTACTATTGCAGCCGATACGCAATCGACCACTGTAAATAAAACGTTAACAGTGGATGGTGTGACTTCTGCTACTTATCCAGCTCAGCCTAATGTGTTAGCGTTGCTGACGCCGTCAAATGCGTGTGAGGCGCGCTGTCAAAGTCACTACGAGGCGTGCGTGAAATGGGCGCCACCTTGGACAAACTGTAATGATTTTATTAGAAGTTGTATGAACAACTGCGCAAATAAATAAAGTTAAACCTTGTTGTTAAATAATAGGTGATATGAAAGGCCGGTGCAGCGGCCTTTTTGGTGGGTGCAAAAATACTAAAATACCTTTTTATTTTTGTTTAGTATCATAATATTTAAAATCAATGAGTTACAAACCATCTAAAAAAACATGGTGTTTTTTGAATTATTTAGTTAGGTGTTTGTATTCACATGTTTTTGTGTTAAAAACTCATA # Right flank : GATGAGTGACCGAAACGAAGTTTCGCAGCACAAGGAGTGAGGTCATGGATGACCGATGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10130-12198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYC01000062.1 Pseudoalteromonas luteoviolacea CPMOR-1 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10130 28 100.0 32 ............................ GTCACTCGCATCAATAGAAATGGAATTTTACC 10190 28 100.0 32 ............................ TGTCATGATCTCGTCAGCAATAAATTTACCAC 10250 28 100.0 32 ............................ TACCAAATCCCAAAGCAAAAGACGAGGAAACA 10310 28 100.0 32 ............................ TCCAAAGTGGCCTTTTCAACGTCTGGGTTTTT 10370 28 100.0 32 ............................ CCAAGTGAAAGCCTCAGCTATGCCAAGGCTGT 10430 28 100.0 32 ............................ ACCTCCAAGAGTAAACGTTAAACCCGTTTTGC 10490 28 100.0 32 ............................ AACCTCGCGGGCTTCTGCAAGTGCACTAACAG 10550 28 100.0 32 ............................ TCAACAAACCATTCAATTAATCCACCCATGAT 10610 28 100.0 32 ............................ TCAACATCCTGATACAAGGATTTAAGTACTCA 10670 28 100.0 32 ............................ AGTTACAACGCCGCTGTCTACAACAACAGAGC 10730 28 100.0 32 ............................ AAGCTAAAGCGATCACTAATACACTCGCTATT 10790 28 100.0 32 ............................ AAAGTTTAAGCGCAAATCCGCTGGAAAAACAA 10850 28 100.0 32 ............................ AATCACATGGATATATGCAATGAAACTCTTCT 10910 28 100.0 32 ............................ AGTATTGTCTTCTCGATAAGTGCTGATAACTT 10970 28 100.0 32 ............................ CAGAAGCCGGCTCACTAACTGTTACATAACCT 11030 28 100.0 32 ............................ TGCGTGGGTACTTGCAATACTTGTCGCTGATA 11090 28 100.0 32 ............................ GCTTATTTTGGTAAAGGTAGCCGACATAAACG 11150 28 100.0 32 ............................ AATCACATCTAGCGCCCAAATCCAAAGTTCTA 11210 28 100.0 32 ............................ TCAAAGAGTTTCAAAGCCAGTTTATTGAAATT 11270 28 100.0 32 ............................ ACGCCAAAAAACTCAAGAGAGGCTCTTCGTTT 11330 28 100.0 32 ............................ ATCAGGCGTCAAACTGTAATTGTCATTTTCAT 11390 28 100.0 32 ............................ CAAATTCAGGGTTTAATCTATTTGCAGCGGCA 11450 28 100.0 32 ............................ TTACTAAGTGAACAGGAAGTATTGCCCCACGT 11510 28 100.0 32 ............................ TAATTTCGAATCTACATTATGTTGAGAAAGGC 11570 28 100.0 32 ............................ AATTGAAGCCAATGAGCTAATTAAAAGCCTTT 11630 28 100.0 32 ............................ TGCCAAATCACACGTTAAAACTAAATGCTACT 11690 28 100.0 32 ............................ TGATATAAGCATAAGTGTCCGAGCCTGTGACT 11750 28 100.0 33 ............................ CCACGACAATTCACAAAGGCGACACAACGAAAT 11811 28 100.0 32 ............................ TCTCTAAGATAATCCAACACATCACGTTGATT 11871 28 100.0 32 ............................ ATGAAGATAAAGGGGCTACTTGATTCACCCCG 11931 28 100.0 32 ............................ ATCAAGGAACGGCAGCAGTTCAAAGCAATCAT 11991 28 82.1 32 G.........GAA........A...... AGTATGTTTGTCTTTCCAGCTATCTGTTGTTG 12051 28 89.3 32 ..........GAA............... AAGGGTAATGTTTTCCCCTTGGGTTAGTTTTG 12111 28 89.3 32 ..........GAA............... GCAGAGGTGAAGGAAATACTATTCTGCAAAAG 12171 28 89.3 0 ..........GA.......A........ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.6 32 CTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : CCAGATGAGGTCAGTTATGTGAGCTTTACGAGAAAAAACGTCAAAAGCCCTGAACGCATTGAGCGTGAAATGACAGAAAAAGCGCAGCGATGGTCTCAAAAAAGTGGCAAGTCTTTAGAGGAATGTTTAGCTGAACTTGAACAAACTAAACCTGATCTAAATACCAAACACGCCTTTATCTTTTTGCATAGCCAACAGACCAAAGTGCGCTCTCCGGATAAAAACAATAAGTACCCGTTATTTATTGCTATGCAAGAACGCGAAAGTGATACACATGGCACATTTGACTGCTATGGATTGAGTGCAAAGGCAAATGATAAAAATTCGTTTGGGTGTGTCCCTCAGTTCTAACAAATAAAGGGTATTTTTACCTTTTATTTTTGCTCTTTTAAAATTTGTATAAAATACAATGAGTTGTGATAGGCTGTTTTTAACAAGGTAAAAATAGGTTTTTTTGCCTTAGTAGCTGTTGCAACTTATCTTTTTTCATTTATTCTATA # Right flank : ATTCAAAATGGCTCGTGCTTGATTAGGGAAAATCTTCACTGTCGCACCGTAGGTGTATGTATTCGTGATGGGTTGTTGAGTCTAACGAGGAGCTGCTTGTGTAACGCAGTAAAAATGGATCCTGATATTCATCAGGATGACGGGGTGAGGTAGGTGTGTTGATTTGAAATTGGCCCATTTAATTTTGTGTTTATTGAAGAGCTATTTTTTGGTGCATAGAAAATGAATCCTGATGTTCATTAGGATGACGGGGTGAGGTCGGTGTGTTGATTTGAAATTGACCCACTTAATGTTGTGTCTACTGAAGAACTATTTTTAGGTGCATAGAAAATGGATCCTGATATTCATCAGGATGACTAGGGTGAGGTAGGTGTGTTGATTTATCTTAAGTGGCGCGTATTAATCGTCGTAATAGCTGTGTTTTCTGCTTTTGCTAACAAACGAATCACATGCACAAATCCCAAAACTGGATCCTGATGTTCATCAGGATGACGTGGGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //