Array 1 1398-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZND01000191.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_192_20_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1397 28 96.4 32 ............T............... TCGTACTGGTCGAGATTTCCGAGTCGGAAGCC 1337 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1277 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1217 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1157 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1097 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1037 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 977 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 917 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 857 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 797 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 737 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 677 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 617 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 557 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 496 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 436 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 376 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 316 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 256 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 196 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 136 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TAGGCAGCTAAGAAATACAAGCACGTCGGCGAGCTGAGCTGCAAAG # Right flank : ATCGTACTGGTCGAGATTTCCGATTCGGAAGCCGTTCACTGCCGTGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22094-22361 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZND01000218.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_219_12_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22094 28 100.0 32 ............................ ATCGATCCCCGCCGATGGCGTAAAGGAAATCC 22154 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 22214 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 22274 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 22334 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZND01000284.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_286_16_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 79 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 139 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 199 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAGGACGTGGCCACCGTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6391-5463 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZND01000003.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_3_17_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6390 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 6330 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 6270 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 6210 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 6150 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 6090 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 6030 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 5970 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 5910 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 5850 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 5790 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 5730 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 5670 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 5610 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 5550 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 5490 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 869-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZND01000164.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_165_28_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 868 27 96.4 32 -........................... GCCCAGGACGATCTACTACTACGGCATCCCGG 809 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 749 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 689 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 629 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 569 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 509 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 449 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 388 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 328 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 268 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 208 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 148 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 88 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //