Array 1 187177-188399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLB010000007.1 Listeria seeligeri strain FSL W9-0488 NODE_7_length_193707_cov_53.891752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187177 36 100.0 30 .................................... AGTTCCTTAATTAGGTTTAGTATGTGGATG 187243 36 100.0 30 .................................... TTTGTAATTATGTGAGTGTAAATACTTTTG 187309 36 100.0 30 .................................... ACACATATATTGACGGGAAGCTAGTATCAT 187375 36 100.0 30 .................................... TAAGTGATTTAGAAGAATCAATAAACACGG 187441 36 100.0 30 .................................... TATAAAGATAGTGATACCAATGGATTTCAG 187507 36 100.0 30 .................................... TTTTACCACCCCCACTATGGCATATTTACC 187573 36 100.0 30 .................................... TGACCTGTCATAACGAAAAATCGACCGTCC 187639 36 100.0 30 .................................... CATCGAAGAATTGCATGCTATATCCATCTA 187705 36 100.0 30 .................................... TTCTCATTCTAATCATATTAAGTCTTGCGT 187771 36 100.0 30 .................................... TAATGTCATTAGATTTTTTAGACAGTGTCA 187837 36 100.0 30 .................................... TATCTGCTCCCTTTTGTATGTACCAATCCG 187903 36 100.0 30 .................................... ACTTTCTCTTGTGATCATTGTGAAAAGTTT 187969 36 100.0 30 .................................... TCTCCTTAGCGTGTTCTAGTTCAGAATACT 188035 36 100.0 29 .................................... CTCTAAATGTAATGTATAATTGACATAAA 188100 36 100.0 30 .................................... TGGAAATCCTTGCAACCTCCAGCACTCTCG 188166 36 100.0 30 .................................... TTGTCTAGTTACACAGAATACAGTGTGAGT 188232 36 100.0 30 .................................... TGGTGCAATAATAATTTCTTTGTCCCAAGT 188298 36 100.0 30 .................................... AAAAGATAGTTTGGACTTTCCGGAATTTTA 188364 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACAGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 12708-11900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLB010000003.1 Listeria seeligeri strain FSL W9-0488 NODE_3_length_256975_cov_49.454752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 12707 29 100.0 34 ............................. TTCTTTCTCTACAAATTCCTTGAAGGTGAGCTTA 12644 29 100.0 37 ............................. AATGGTTTGAATTTAGATTATTGGGATGAGCACGAAG 12578 29 100.0 36 ............................. AGTGAAGAATTTAGAACAGCAATTAGAGTTAGCAAA 12513 29 100.0 36 ............................. ACCACTCTTGAAACGATGGCAAACAGCGCTCGTTTC 12448 29 100.0 36 ............................. ATATGTAATCAGTATACCAAACGATTATGCTTGGGA 12383 29 100.0 36 ............................. ACACCCACTTACCATTCTCATCTCGTTCATAGTCCC 12318 29 100.0 35 ............................. CAAGTAAAGCGATTTTACTTGGTGCCCCCGCTTGC 12254 29 96.6 35 A............................ ATTAAACGAGGACGCAATCGACTCGCTAAAATTTG 12190 29 100.0 37 ............................. TGTCTAGCTGATTACCAGCCAGAATCAGGGTGTAAGG 12124 29 100.0 35 ............................. TTTTTTCAGTAAACGTAATTACTCTCGCCCTTGCG 12060 29 100.0 37 ............................. ATTTATGGATTGCGGCGGCATCTTCTTTTCTGTCAAC 11994 29 100.0 37 ............................. GTGATCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 11928 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGAACGACAGAAATGTGGGAAGCCTTGGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 24520-21316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLB010000003.1 Listeria seeligeri strain FSL W9-0488 NODE_3_length_256975_cov_49.454752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24519 29 100.0 36 ............................. GAGTAAAGAAGTTTGTGAAATTTGGGTGTCAACAAA 24454 29 100.0 34 ............................. CCACAAGAGAAACAGCTAAACACATTGAGATCAT 24391 29 100.0 36 ............................. GGAAATGGGCAAAAGTTAGATATTAGAGCTTGTGAG 24326 29 100.0 34 ............................. CACTGAGCCGATATGAAGGAGGAGCTTTACAAAC 24263 29 100.0 34 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTT 24200 29 100.0 34 ............................. AAAATTTACTATCAAATAAAAAATGATTATCTTT 24137 29 100.0 36 ............................. TCATCCGCCGCTTTAATATTACTACCTGTTGGTTGA 24072 29 100.0 36 ............................. TATGTTTCTCGCATTTCAACAAACCAATTGACCACA 24007 29 100.0 35 ............................. TGATTAGGAGGATGTTAACAATGACTAAGAAGAAA 23943 29 100.0 34 ............................. CATACAATGTTGGCTTACTTCCTAAGTCATCTTC 23880 29 96.6 37 ................A............ GAACTAGTAAATGAAGCTACTAAAGCAACGCAGGATG 23814 29 100.0 36 ............................. CGGAATGTGGGGATGCCCTCTACTGGCTTAGGTATT 23749 29 100.0 37 ............................. CGTGATAACATGTATACATAGCCAAGAGACCTAATGT 23683 29 100.0 38 ............................. CAACATATGTTAATTGTGAATCAGGATTTAAGAGATAT 23616 29 100.0 34 ............................. GCGACACTTTCGTTTGTACTTCGATTTCATGTAA 23553 29 100.0 37 ............................. TAATGAGCGGTGCTACTGCTGTAGTGGAAGCTTGATT 23487 29 100.0 36 ............................. AGTGCTACCAGTACAAGGAAATGAAGAAGGAGATGC 23422 29 100.0 36 ............................. ATATACTCACAATTAACAGACTTATTGGAGGAATGG 23357 29 100.0 35 ............................. GTGAATGATAAATTAACACCGTGAGTGACAATACC 23293 29 100.0 36 ............................. CAAGGTGTATGAACTCAATCGTTTATGCCTTGTGAG 23228 29 100.0 37 ............................. TCGTTTAGGTAGTCTTGTGGAATTCGAGGTGACGTTA 23162 29 100.0 36 ............................. AGCGGTGAAGCCATAACCCGACGCAAATCCATACAT 23097 29 100.0 34 ............................. ATGAGTAAAATAGTTTTATCTCAATCTCTAGATA 23034 29 100.0 36 ............................. TTGTTAGAGCCTATAAGCGCGTCTATGGGGTTTACT 22969 29 100.0 38 ............................. AGGGTCTTGATTTGAGAATATCATTCAAAGTAATAACT 22902 29 100.0 36 ............................. TTCCTATCTGTATGAATATGCGTTTTTTGCTCGAAT 22837 29 100.0 34 ............................. GGAACAAAAATCCTCAATCATAGTGAATCTAAAA 22774 29 100.0 38 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACTGGTTTTCC 22707 29 100.0 36 ............................. AAATCCGTCACCCTATATAAGCGGAAATCGGCGACG 22642 29 100.0 36 ............................. ACACGATATCTCCAATGACCACTGTAGTTTCCCACA 22577 29 100.0 36 ............................. AAGGATATGTTAGAGCCTATCCAGAGATGGGAATTT 22512 29 100.0 37 ............................. ATCGGTTCGTATGGTGCGATATTAACATCCGTAGGCA 22446 29 100.0 37 ............................. ACTGGATTTACACAGGGGCGACGAAGCGACGGACTGA 22380 29 100.0 36 ............................. TCAAAATTACTAATCCTGTGAACACTGCTACTACTT 22315 29 100.0 35 ............................. CCGTTTTTGGTGCGGTGGTTGCCCGCCAACATCGC 22251 29 100.0 36 ............................. AAGTCCTAGCTGAGACAATCAAGCGTATGCATGAGG 22186 29 100.0 35 ............................. GATAATCCGAATGTAGGAAAAGTTATTTGGAAGCA 22122 29 100.0 31 ............................. AAAAAAATGGCTTTACTACAACGTTTTTAAT 22062 29 100.0 35 ............................. ATCAATGTTACCTTTTTTGAAAGGGGTAGAAACAA 21998 29 100.0 35 ............................. AATTTAACAGACACAGAATTGTTGCTTTTATGCGA 21934 29 100.0 37 ............................. ATCGGTTCGTATGGTGCGATATTAACATCCGTAGGCA 21868 29 100.0 37 ............................. ACTGGATTTACACAGGGGCGACGAAGCGACGGACTGA 21802 29 100.0 37 ............................. CAACGACAATGGTTACTTTTACAGATATGAAGCGATA 21736 29 100.0 36 ............................. CCCGGATAATCAGGGTTAAGATGCTATTATTGTCCG 21671 29 100.0 37 ............................. TCGAGACTTAGACGACCATCTTCAATGGCTTTCACCA 21605 29 100.0 36 ............................. TAAAGAGAAAAATATTGGCTTATTGGTCACGAGTGG 21540 29 100.0 37 ............................. GTTTGAGCGGTGAATTTAGCAGTGACATCTTGCACAG 21474 29 100.0 36 ............................. GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 21409 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 21345 29 86.2 0 ........C....C..A...........G | T [21318] ========== ====== ====== ====== ============================= ====================================== ================== 50 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 30975-30755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLB010000003.1 Listeria seeligeri strain FSL W9-0488 NODE_3_length_256975_cov_49.454752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 30974 29 100.0 35 ............................. ACGATAAATCTGTCAACGTTTGCAAGCATGAAATC 30910 29 100.0 36 ............................. GATAATGAGCCAAAGATTTCGGAATGGGACAAAATT 30845 29 100.0 33 ............................. TTTTTTCAGATATATGCAACAAATGAATTTCTC 30783 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 99.2 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTAGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGTGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCTGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //